A Transcription Factor Collective Defines Cardiac Cell Fate and Reflects Lineage History
Junion, Guillaume, Spivakov, Mikhail, Girardot, Charles, Braun, Martina, Gustafson, E. Hilary, Birney, Ewan, Furlong, Eileen E.M.·2012·Cell
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- Integrating genetic variation with deep learning provides context for variants impacting transcription factor binding during embryogenesisOlga M. Sigalova, Mattia Forneris, Frosina Stojanovska, Bingqing Zhao, Rebecca R. Viales, Adam H. Rabinowitz, Fayrouz Hammal, Benoît Ballester, Judith B. Zaugg, Eileen E. M. Furlong · 2025 · Genome Research
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- Neonatal diabetes mutations disrupt a chromatin pioneering function that activates the human insulin geneİldem Akerman, Maestro MA, De Franco E, Vanessa Grau, Sarah Elizabeth Flanagan, Javier García-Hurtado, Gerhard Mittler, Philippe Ravassard, Lorenzo Piemonti, Sian Ellard et al. · 2021 · Yearbook of pediatric endocrinology
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- Deconvolving sequence features that discriminate between overlapping regulatory annotationsAkshay Kakumanu, Silvia Velasco, Esteban Mazzoni, Shaun Mahony · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
- The Sheep and the Goats: Distinguishing transcriptional enhancers in a complex chromatin landscapeAnne Sonnenschein, Ian M. Dworkin, David N. Arnosti · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
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- Regulation of stereotypic chromatin conformations at enhancers by CLOCK:BMAL1Xinyu Y. Nie, Neha Ahuja, Amber Hsieh, Garima Abbi, Yuchao Jiang, Jérôme S. Menet · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
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- Unraveling Mechanisms of Transcriptional Repression: Novel Insights from BrinkerPriyanka Upadhyai · 2013 · D-Scholarship@Pitt (University of Pittsburgh)
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- Expression profiling reveals novel role of Hunchback in retinal glia cell development and blood-brain barrier integrityMontserrat Torres-Oliva, Júlia Schneider, Gordon Wiegleb, Felix Kaufholz, Nico Posnien · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
- Functional analysis of human enhancers using the zebrafish embryoIrene Miguel-Escalada · 2014 · University of Birmingham Institutional Research Archive (University of Birmingham)
- DeepMotifSyn: a deep learning approach to synthesize heterodimeric DNA motifsJiecong Lin, Lei Huang, Xingjian Chen, Shixiong Zhang, Ka‐Chun Wong · 2021 · Briefings in Bioinformatics
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- A T-box Protein Interacting with the TCF Transcriptional Switch of Wnt Signaling in Xenopus Dorsal Axis Development.Yaxuan X. Yang · 2014 · Deep Blue (University of Michigan)
- Prediction of Transcription Factor Binding Sites Using Deep Learning Combined with DNA Sequences and Shape Feature DataYangyang Li, Jie Liu, Hao Liu · 2021 · ACM International Conference on Multimedia in Asia (MMAsia)
- Faculty Opinions recommendation of Homotypic cooperativity and collective binding are determinants of bHLH specificity and function.Erich Grotewold, Nan Jiang · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
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- Determination of Complex Formation between Drosophila Nrf2 and GATA4 Factors at Selective Chromatin Loci Demonstrates Transcription CoactivationEmma Neidviecky, Huai Deng · 2023 · Cells
- A single DPE core promoter motif contributes to in vivo transcriptional regulation and affects cardiac functionAnna Sloutskin, Dekel Itzhak, Georg Vogler, Diana Ideses, Hadar Alter, Hadar Shachar, Tirza Doniger, Manfred Frasch, Rolf Bodmer, Sascha H. C. Duttke et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Contextualising transcription factor binding during embryogenesis using natural sequence variationOlga M. Sigalova, Mattia Forneris, Frosina Stojanovska, Bingqing Zhao, Rebecca R. Viales, Adam H. Rabinowitz, Fayrouz Hammal, Benoît Ballester, Judith B. Zaugg, Eileen E. M. Furlong · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Balancing precision with plasticity: Redefining the roles of transcription factors in early cell fate specificationShiva Abbasi, Sijie Li, George Charitos, Evangelia Chrysostomou, Wenjiang Zhou, Panagiotis Apostolidis, Priyanshi Borad, Peng He, Theodora Koromila · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Enhancer Poising Enables Pathogenic Gene Activation by Noncoding VariantsEthan W. Hollingsworth, Zhuoxin Chen, Cindy X. Chen, Sandra H. Jacinto, Taryn Audrey Liu, Evgeny Z. Kvon · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Genome-wide rules of transcription factor cooperativity revealed through in silico binding site ablationXuening He, Hjörleifur Einarsson, Petra Páleníková, Sarah Rennie, Dewei Hu, Ruining Cui, Christian Vaagensø, Kasper Lage, Robert Krautz, Robin Andersson · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Languages of Hereditary Information Unfolding in Development: Linguistic Analogies and Semiotic AspectsAlexander V. Spirov · 2025 · Biosystems
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- Additional file 1 of A cis-regulatory-directed pipeline for the identification of genes involved in cardiac development and diseaseHieu Tri Nim, Dang, Louis, Harshini Thiyagarajah, Daniel Bakopoulos, Michael See, Natalie Charitakis, Tennille Sibbritt, Michael Eichenlaub, Archer, Stuart K., Nicolas Fossat et al. · 2021 · Figshare
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