The DOI matches its Crossref record; 54 of the 54 references it cites were found in a registry or an index.
Step-Wise Methylation of Histone H3K9 Positions Heterochromatin at the Nuclear Periphery
Open accessAbstract
The factors that sequester transcriptionally repressed heterochromatin at the nuclear periphery are currently unknown. In a genome-wide RNAi screen, we found that depletion of S-adenosylmethionine (SAM) synthetase reduces histone methylation globally and causes derepression and release of heterochromatin from the nuclear periphery in Caenorhabditis elegans embryos. Analysis of histone methyltransferases (HMTs) showed that elimination of two HMTs, MET-2 and SET-25, mimics the loss of SAM synthetase, abrogating the perinuclear attachment of heterochromatic transgenes and of native chromosomal arms rich in histone H3 lysine 9 methylation. The two HMTs target H3K9 in a consecutive fashion: MET-2, a SETDB1 homolog, mediates mono- and dimethylation, and SET-25, a previously uncharacterized HMT, deposits H3K9me3. SET-25 colocalizes with its own product in perinuclear foci, in a manner dependent on H3K9me3, but not on its catalytic domain. This colocalization suggests an autonomous, self-reinforcing mechanism for the establishment and propagation of repeat-rich heterochromatin.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“A number of recent reports demonstrate that histone and DNA methylation is sensitive to alterations in SAM levels (Chiang et al., 2009; Shyh-Chang et al., 2013; Towbin et al., 2012).”
From The emerging hallmarks of cancer metabolism (2016) · cites this paper as Towbin et al., 2012
Citations
Cites
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Langmead, B., Trapnell, C., Pop, M., & Salzberg, S. L. (2009) · Genome Biology · doi:10.1186/gb-2009-10-3-r25 · Cited by 21,849
Bioconductor: open software development for computational biology and bioinformatics
Gentleman, R. C., Carey, V. J., Bates, D. M., Bolstad, B., Dettling, M., Dudoit, S., Ellis, B., Gautier, L., Ge, Y., Gentry, J., et al. (2004) · Genome biology · doi:10.1186/gb-2004-5-10-r80 · Cited by 12,082
Gentleman R: R: A language for data analysis and graphics
Ihaka, R., & Gentleman, R. (1996) · Journal of Computational and Graphical Statistics · doi:10.1080/10618600.1996.10474713 · Cited by 11,747
DAVID: Database for Annotation, Visualization, and Integrated Discovery
Dennis, G., Sherman, B. T., Hosack, D. A., Yang, J., Gao, W., Lane, H. C., & Lempicki, R. A. (2003) · Genome Biology · doi:10.1186/gb-2003-4-5-p3 · Cited by 9,327
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
Kamath, R. S., Fraser, A. G., Yan, D., Poulin, G. B., Durbin, R. M., Gotta, M., Kanapin, A. A., Bot, N. L., Moreno, S., Sohrmann, M., et al. (2003) · Nature · doi:10.1038/nature01278 · Cited by 3,629
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain
Bannister, A. J., Zegerman, P., Partridge, J. F., Miska, E. A., Thomas, J. O., Allshire, R. C., & Kouzarides, T. (2001) · Nature · doi:10.1038/35065138 · Cited by 2,903
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins
Lachner, M., O'Carroll, D., Rea, S., Mechtler, K., & Jenuwein, T. (2001) · Nature · doi:10.1038/35065132 · Cited by 2,868
Regulation of chromatin structure by site-specific histone H3 methyltransferases
Rea, S., Eisenhaber, F., O'Carroll, D., Strahl, B. D., Sun, Z.-W., Schmid, M., Opravil, S., Mechtler, K., Ponting, C. P., Allis, C. D., et al. (2000) · Nature · doi:10.1038/35020506 · Cited by 2,845 · cited 2×
“To test whether SET-25 foci depend specifically on H3K9 methylation, we created a point mutation in the catalytic site of SET-25 (C645A), which corresponds to a catalytic null mutation in the homologous SET domain of human Suv39h (Rea et al., 2000).”
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
Guelen, L., Pagie, L., Brasset, É., Meuleman, W. R. A., Faza, M. B., Talhout, W., Eussen, B. H. J., de Klein, A., Wessels, L. F. A., de Laat, W. L., et al. (2008) · Nature · doi:10.1038/nature06947 · Cited by 2,042
Timmons, L., Court, D. L., & Fire, A. Z. (2001) · Gene · doi:10.1016/s0378-1119(00)00579-5 · Cited by 1,840
Flagged first, then by citations
Research works printed but not linked: 8
- Andersen, E.C., and Horvitz, H.R. (2007). Two C. elegans histone methyltransferases repress lin-3 EGF transcription to inhibit vulval development. Development 134, 2991–2999. · DOI
- Azzaria, M., Goszczynski, B., Chung, M.A., Kalb, J.M., and McGhee, J.D. (1996). A fork head/HNF-3 homolog expressed in the pharynx and intestine of the Caenorhabditis elegans embryo. Dev. Biol. 178, 289–303. · DOI
- Bessler, J.B., Andersen, E.C., and Villeneuve, A.M. (2010). Differential localization and independent acquisition of the H3K9me2 and H3K9me3 chromatin modifications in the Caenorhabditis elegans adult germ line. PLoS Genet. 6, e1000830. · DOI
- Frøkjaer-Jensen, C., Davis, M.W., Hopkins, C.E., Newman, B.J., Thummel, J.M., Olesen, S.-P., Grunnet, M., and Jorgensen, E.M. (2008). Single-copy insertion of transgenes in Caenorhabditis elegans. Nat. Genet. 40, 1375–1383. · DOI
- Kamath, R.S., Fraser, A.G., Dong, Y., Poulin, G., Durbin, R., Gotta, M., Kanapin, A., Le Bot, N., Moreno, S., Sohrmann, M., et al. (2003). Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 421, 231–237. · DOI
- Lehner, B., Tischler, J., and Fraser, A.G. (2006). RNAi screens in Caenorhabditis elegans in a 96-well liquid format and their application to the systematic identification of genetic interactions. Nat. Protoc. 1, 1617–1620. · DOI
- Meister, P., Towbin, B.D., Pike, B.L., Ponti, A., and Gasser, S.M. (2010). The spatial dynamics of tissue-specific promoters during C. elegans development. Genes Dev. 24, 766–782. · DOI
- Peters, A.H.F.M., Kubicek, S., Mechtler, K., O’Sullivan, R.J., Derijck, A.A.H.A., Perez-Burgos, L., Kohlmaier, A., Opravil, S., Tachibana, M., Shinkai, Y., et al. (2003). Partitioning and plasticity of repressive histone methylation states in mammalian chromatin. Mol. Cell 12, 1577–1589. · DOI
Cited by
Sorted by citations
Items 601–606 of 606
Proximity labeling at H3K9me3 reveals VRK-1 regulate global chromatin distribution in C. elegansPreprint
Smith, W., Aksianiuk, V., Pfaendler, R., Villaseñor, R., Sankar, D. S., Stumpe, M., Lenárt, P., Askjaer, P., Towbin, B. D., Baubec, T., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.07.07.737140
Akhter, S., Nwose, F. E., Meem, H., Sen, T., & Rogers, A. (2026) · Genetics · doi:10.1093/genetics/iyag173
Mitochondrial stress signaling shapes the nuclear response to loss of the chromatin reader MRG-1Preprint
Zaratiegui, C., Pabst, F. R., Palero, M.-J. R., Meister, P., Artal‐Sanz, M., & Cabianca, D. S. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.08.14.744963
Single-molecule chromatin tracing reveals a diversity of megabase heterochromatin domains
Pulido, D. C., You, J. E., Angonezi, A. L., Kuznetsov, A. A., Xu, F., Verheijen, T., Saw, A. N., Kos, P. I., Giorgetti, L., Molina, N., et al. (2026) · Nature Structural & Molecular Biology · doi:10.1038/s41594-026-01895-4 · Cited by 1
RIF1 coordinates the stepwise post-replicative H3K9me3 recovery
Chen, N., Bandau, S., Nair, R., Prevo, B., Sasaki, T., Webb, S., Sanzo, S. D., Jiang, H., Shapira, D., Lipattsev, S., et al. (2026) · Cell Reports · doi:10.1016/j.celrep.2026.118191 · Cited by 1
Delaney, C. E., Fol, L., Gruenewald, S. B., You, J. E., Ferrario, E., Moeckel, M. M., Stelzl, L. S., Gasser, S. M., Padeken, J., & Mango, S. E. (2026) · Molecular Cell · doi:10.1016/j.molcel.2026.10.002 · Cited by 3
Metadata
- Authors
- Towbin, B. D., González-Aguilera, C., Sack, R., Gaidatzis, D., Kalck, V., Meister, P., Askjaer, P., & Gasser, S. M.
- Affiliations
- University of Basel (CH)
- Friedrich Miescher Institute (CH)
- Consejo Superior de Investigaciones Científicas (ES)
- Corresponding author
- Gasser, Susan M.
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2012-08
- Volume
- 150
- Issue
- 5
- Pages
- 934-947
- ISSN
- 0092-8674 (ISSN-L)
- OpenAlex
- W2033160626
- Cited by
- 597
- References
- 54
- Citations by year
- 2026: 29 · 2025: 33 · 2024: 39 · 2023: 24 · 2022: 36 · 2021: 42 · 2020: 51 · 2019: 42 · 2018: 57 · 2017: 45 · 2016: 56 · 2015: 48 · 2014: 42 · 2013: 45 · 2012: 7
- FWCI
- 18.22
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell (publishedVersion)
- PubMed (publishedVersion)
- BORIS (University Library Bern) (submittedVersion)
- DIGITAL.CSIC (Spanish National Research Council (CSIC)) (submittedVersion, other-oa)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
- Keywords
- heterochromatin, nuclear periphery, histone H3 lysine 9 methylation, histone methyltransferase, MET-2, S-adenosylmethionine synthetase, H3K9me3, chromatin condensation, Caenorhabditis elegans embryo, RNAi screen
- MeSH terms
- Animals, Cell Nucleus, Chromosomes, Embryo, Nonmammalian, Heterochromatin, Histones, Methionine Adenosyltransferase, Methylation, Mutation, Histone-Lysine N-Methyltransferase, Caenorhabditis elegans, Caenorhabditis elegans Proteins, Lamins, Genome, Helminth
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review