Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells

Chen, Jiji, Zhang, Zhengjian, Li, Li, Chen, Bi-Chang, Revyakin, Andrey, Hajj, Bassam, Legant, Wesley, Dahan, Maxime +4 more·2014·Cell

DOI 10.1016/j.cell.2014.01.062

Cited by (604)

Items 301–400 of 604

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Abrar A Abidi, Claudia Cattoglio, Natalie N Tang, Vinson B. Fan, Gina M. Dailey, Amir D. Hay, Prasanthi Kunamaneni, Daniel Edward Milkie, Xavier Darzacq, Eric Betzig et al. · 2026 · Science
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Transcription and epigenetic factor dynamics in neuronal activity-dependent gene regulation
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Short Residence Times of DNA-Bound Transcription Factors Can Reduce Gene Expression Noise and Increase the Transmission of Information in a Gene Regulation System
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Zhengjian Zhang, Robert Tjian · 2017 · Transcription
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Bhaswati Bhattacharyya, Jin Wang, Masaki Sasai · 2020 · Physical review. E
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John Biddle, Jeremy Gunawardena · 2020 · Physical review. E
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Zuhui Wang, Wulan Deng · 2021 · Developmental Biology
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Samuel A. Manning, Benjamin Kroeger, Qiji Deng, Elliot Brooks, Yoshana Fonseka, Elizabeth Hinde, Kieran F. Harvey · 2024 · Developmental Cell
Conformational Dynamics and the Binding of Specific and Nonspecific DNA by the Autoinhibited Transcription Factor Ets-1
Geneviève Desjardins, Mark Okon, Barbara J. Graves, Lawrence P. McIntosh · 2016 · Biochemistry
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Ziqing Zhao, Melanie D. White, Stéphanie Bissière, Valeria Levi, Nicolas Plachta · 2016 · BMC Biology
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Stéphanie Bissière, Maxime Gasnier, Yanina D. Álvarez, Nicolas Plachta · 2017 · Current topics in developmental biology/Current Topics in Developmental Biology
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Jeetayu Biswas, Weihan Li, Robert H. Singer, Robert A. Coleman · 2021 · Cold Spring Harbor Perspectives in Biology
Integrated omics approaches to characterize a nuclear receptor corepressor-associated histone deacetylase in mouse skeletal muscle
Yingyun Gong, Rui Cao, Guolian Ding, Sungguan Hong, Wenjun Zhou, Wenyun Lu, Manashree Damle, Bin Fang, Chuhan Wang, Justin Qian et al. · 2017 · Molecular and Cellular Endocrinology
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Timo J. Doerries, Ralf Metzler, Aleksei V. Chechkin · 2023 · New Journal of Physics
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Veer I. P. Keizer, Stefano Coppola, Adriaan B. Houtsmuller, Bart Geverts, Martin E. van Royen, Thomas Schmidt, Marcel J. M. Schaaf · 2019 · Journal of Cell Science
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Srinjan Basu, Ofir Shukron, Dominic Hall, Pierre Parutto, Aleks Ponjavic, D Shah, W Boucher, David Lando, W Zhang, Nicola Reynolds et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
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Goro Nishide, Tomoka Ishibashi, Keesiang Lim, Yujia Qiu, Masaharu Hazawa, Ayami Matsushima, Richard Wing-Chuen Wong · 2025 · ACS Nano
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Benjamin Kroeger, Samuel A. Manning, Varshini Mohan, Qiji Deng, 楼洁琼, Guizhi Sun, Sara Lamont, Alex J. McCann, Mathias François, Jose Maria Polo et al. · 2025 · Science Advances
Insights from resolving protein–DNA interactions at near base-pair resolution
Bryan J. Venters · 2017 · Briefings in Functional Genomics
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Peter Hoboth, Ondřej Šebesta, Pavel Hozák · 2021 · International Journal of Molecular Sciences
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Konstantin N. Kozlov, Vitaly V. Gursky, Ivan V. Kulakovskiy, Arina Dymova, Maria G. Samsonova · 2015 · BMC Genomics
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Itziar Ibarlucea-Benitez, Luke S. Ferro, David G. Drubin, Georjana Barnes · 2018 · The Journal of Cell Biology
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Albert Tsai, Rafael Galupa, Justin Crocker · 2020 · Development
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Yuan Zhang, Yuqing Lu, Hafez El Sayyed, Jiahui Bian, Jinxing Lin, Xiaojuan Li · 2022 · PLANT PHYSIOLOGY
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Mitra Forouhan, Wooi Fang Lim, Laura C. Zanetti-Domingues, Christopher J. Tynan, Thomas C. Roberts, Bilal Ahmad Malik, Raquel Manzano, Alfina A. Speciale, Ruth Ellerington, Antonio Garcia-Guerra et al. · 2022 · Acta Neuropathologica
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Mahé Raccaud, Andrea Brigitta Alber, Elias T. Friman, Harsha Agarwal, Cédric Deluz, Timo Kuhn, J. Christof M. Gebhardt, David M. Suter · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
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Peter H Whitney, T. Lionnet · 2024 · Current Opinion in Structural Biology
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Beat Fierz · 2015 · ACS Chemical Biology
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Sviatlana Shashkova, Thomas Nyström, Mark C. Leake, Adam J. M. Wollman · 2020 · Methods
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Kyle Brown, Haralambos Andrianakos, Steven Ingersoll, Xiaojun Ren · 2021 · Nucleic Acids Research
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Rachel M. Price, Marek A. Budzyński, Junzhou Shen, Jennifer E Mitchell, James Z.J. Kwan, Sheila S. Teves · 2023 · Nucleic Acids Research
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Jared R. Stees, Mir Ahamed Hossain, Tomoki Sunose, Yasushi Kudo, Carolina E. Pardo, Nancy H. Nabilsi, Russell P. Darst, Rosha Poudyal, Kazuhiko Igarashi, Suming Huang et al. · 2015 · Molecular and Cellular Biology
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Kirstin Meyer, Klaus Yserentant, Rasmi Cheloor-Kovilakam, Kiersten M. Ruff, Chan-I Chung, Xiaokun Shu, Bo Huang, Orion David Weiner · 2025 · Nature Communications
The ChIP-exo Method: Identifying Protein-DNA Interactions with Near Base Pair Precision
Andrea A. Perreault, Bryan J. Venters · 2016 · Journal of Visualized Experiments
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Jieru Li, Alexandros Pertsinidis · 2021 · Biochemical Society Transactions
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Eun‐Bee Choi, Munender Vodnala, Prince Saini, Sharath Anugula, Madeleine Zerbato, Jaclyn J. Ho, Jianing Wang, Shannan J. Ho Sui, Joon Ho Yoon, Marielle Roels et al. · 2023 · Journal of Biological Chemistry
Micelle-like clusters in phase-separated Nanog condensates: A molecular simulation study
Azuki Mizutani, Cheng Tan, Yuji Sugita, Shoji Takada · 2023 · PLoS Computational Biology
Facilitated diffusion buffers noise in gene expression
Armin P. Schoech, Nicolae Radu Zabet · 2014 · Physical Review E
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Nadia M. Huisjes, Thomas M Retzer, Matthias J Scherr, Rohit Agarwal, Lional Rajappa, Barbara Šafarić, Anita Minnen, Karl E. Duderstadt · 2022 · eLife
Sub-10 nm upconversion nanocrystals for long-term single-particle tracking
Xiaochen Qiu, Daoming Guan, Xiaojing Xia, Huan Ling, Jialing Hu, Yunxiang Zhang, Emory M. Chan, Fuyou Li, Qian Liu · 2025 · Nature Communications
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Networks of Transcription Factors for Oct4 Expression in Mice
Yuqiang Li · 2017 · DNA and Cell Biology
RNA synthesis is associated with multiple TBP-chromatin binding events
Hussain Zaidi, David Auble, Stefan Bekiranov · 2017 · Scientific Reports
Genome-wide Mapping of Protein-DNA Interactions with ChEC-seq in Saccharomyces cerevisiae
Sebastian Grünberg, Gabriel E. Zentner · 2017 · Journal of Visualized Experiments
u-track 3D: measuring and interrogating dense particle dynamics in three dimensions
Philippe Roudot, Wesley R. Legant, Qiongjing Zou, Kevin M. Dean, Tadamoto Isogai, Erik S. Welf, Ana Filipa David, Daniel W. Gerlich, Reto Paul Fiolka, Eric Betzig et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
Interplay between stochastic enzyme activity and microtubule stability drives detyrosination enrichment on microtubule subsets
Qing Tang, Sebastian Sensale, Charles R. Bond, Jiazheng Xing, Andy Qiao, Siewert Hugelier, Arian Arab, Gaurav Arya, Melike Lakadamyali · 2023 · Current Biology
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Zian Liao, Suni Tang, Kaori Nozawa, Keisuke Shimada, Masahito Ikawa, Diana Monsivais, Martin Matthew Matzuk · 2024 · eLife
Effective in vivo binding energy landscape illustrates kinetic stability of RBPJ-DNA binding
Duyen Huynh, Philipp Hoffmeister, Tobias Friedrich, Kefan Zhang, Marek Bartkuhn, Francesca Ferrante, Benedetto Daniele Giaimo, Rhett A. Kovall, Tilman Borggrefe, Franz Oswald et al. · 2025 · Nature Communications