Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells

Chen, Jiji, Zhang, Zhengjian, Li, Li, Chen, Bi-Chang, Revyakin, Andrey, Hajj, Bassam, Legant, Wesley, Dahan, Maxime +4 more·2014·Cell

Cited by (604)

Items 101–200 of 604

  1. Seven myths of how transcription factors read the cis-regulatory code
    Julia Zeitlinger · 2020 · Current Opinion in Systems Biology
  2. Pioneer factors and ATP‐dependent chromatin remodeling factors interact dynamically: A new perspective: Multiple transcription factors can effect chromatin pioneer functions through dynamic interactions with ATP‐dependent chromatin remodeling factors
    Swinstead, Erin E., Paakinaho, Ville, Presman, Diego M., Hager, Gordon L. · 2016 · BioEssays
  3. A matter of time: Using dynamics and theory to uncover mechanisms of transcriptional bursting
    Lammers, Nicholas C., Kim, Yang Joon, Zhao, Jiaxi, Garcia, Hernan G. · 2020 · Current Opinion in Cell Biology
  4. Diversity among POU transcription factors in chromatin recognition and cell fate reprogramming
    Malik, Vikas, Zimmer, Dennis, Jauch, Ralf · 2018 · Cellular and Molecular Life Sciences
  5. Mitotic chromosome binding predicts transcription factor properties in interphase
    Mahé Raccaud, Elias T. Friman, Andrea Brigitta Alber, Harsha Agarwal, Cédric Deluz, Timo Kuhn, J. Christof M. Gebhardt, David M. Suter · 2019 · Nature Communications
  6. TALEN outperforms Cas9 in editing heterochromatin target sites
    Surbhi Jain, Saurabh Shukla, Yang Che, Meng Zhang, Zia Fatma, Manasi Lingamaneni, Shireen Abesteh, Stephan Lane, Xiong Xiong, Yuchuan Wang et al. · 2021 · Nature Communications
  7. Real-time imaging of Huntingtin aggregates diverting target search and gene transcription
    Li Li, Hui Liu, Peng Dong, Dong Li, Wesley R. Legant, Jonathan B. Grimm, Luke D. Lavis, Eric Betzig, Robert Tjian, Zhe J. Liu · 2016 · eLife
  8. Unraveling the Thousand Word Picture: An Introduction to Super-Resolution Data Analysis
    Antony Lee, Konstantinos Tsekouras, Christopher P. Calderon, Carlos Bustamante, Steve Pressé · 2017 · Chemical Reviews
  9. Visualizing long-term single-molecule dynamics in vivo by stochastic protein labeling
    Hui Liu, Peng Dong, Maria S. Ioannou, Li Li, Jamien Shea, Hilda Amalia Pasolli, Jonathan B. Grimm, Patricia K. Rivlin, Luke D. Lavis, Minoru Koyama et al. · 2017 · Proceedings of the National Academy of Sciences
  10. Tex10 Coordinates Epigenetic Control of Super-Enhancer Activity in Pluripotency and Reprogramming
    Junjun Ding, Xin Huang, Ning‐Yi Shao, Hongwei Zhou, Dung‐Fang Lee, Francesco Faiola, Miguel Fidalgo, Diana Guallar, Arven Saunders, Pavel V. Shliaha et al. · 2015 · Cell stem cell
  11. Multi-enhancer transcriptional hubs confer phenotypic robustness
    Albert Tsai, Mariana R. P. Alves, Justin Crocker · 2019 · eLife
  12. A matter of time — How transient transcription factor interactions create dynamic gene regulatory networks
    Joseph Swift, Gloria M. Coruzzi · 2016 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
  13. Altering transcription factor binding reveals comprehensive transcriptional kinetics of a basic gene
    Achim P. Popp, Johannes Hettich, J. Christof M. Gebhardt · 2021 · Nucleic Acids Research
  14. The Hippo signal transduction network in skeletal and cardiac muscle
    Wackerhage, Henning, Del Re, Dominic P., Judson, Robert N., Sudol, Marius, Sadoshima, Junichi · 2014 · Science Signaling
  15. Concentration- and chromosome-organization-dependent regulator unbinding from DNA for transcription regulation in living cells
    Tai‐Yen Chen, Ace George Santiago, Won Joon Jung, Łukasz Krzemiński, Feng Yang, Danya J. Martell, John D. Helmann, Peng Chen · 2015 · Nature Communications
  16. Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle
    Elias T. Friman, Cédric Deluz, Antonio C.A. Meireles-Filho, Subashika Govindan, Vincent Gardeux, Bart Deplancke, David M. Suter · 2019 · eLife
  17. The effect of macromolecular crowding on mobility of biomolecules, association kinetics, and gene expression in living cells
    Marcin Tabaka, Tomasz Kalwarczyk, Jędrzej Szymański, Sen Hou, Robert Hołyst · 2014 · Frontiers in Physics
  18. 3D ATAC-PALM: super-resolution imaging of the accessible genome
    Liangqi Xie, Peng Dong, Xingqi Chen, Tsung-Han S. Hsieh, Sambashiva Banala, Margherita De Marzio, Brian P. English, Yifeng Qi, Seol Kyoung Jung, Kyong-Rim Kieffer-Kwon et al. · 2020 · Nature Methods
  19. Pharmacological manipulation of transcription factor protein-protein interactions: opportunities and obstacles
    Frank R. Fontaine, Jeroen Paardekooper Overman, Mathias François · 2015 · Cell Regeneration
  20. Transcription Factor Dynamics
    Feiyue Lu, Timothée Lionnet · 2021 · Cold Spring Harbor Perspectives in Biology
  21. Single molecule tracking and analysis framework including theory-predicted parameter settings
    Timo Kuhn, Johannes Hettich, Rubina Davtyan, J. Christof M. Gebhardt · 2021 · Scientific Reports
  22. The mechanistic basis for chromatin regulation by pioneer transcription factors
    Iwafuchi‐Doi, Makiko · 2019 · WIREs Systems Biology and Medicine
  23. Modulating transcription factor activity: Interfering with protein-protein interaction networks
    Mathias François, Prue Donovan, Frank R. Fontaine · 2018 · Seminars in Cell and Developmental Biology
  24. Single-molecule imaging of the transcription factor SRF reveals prolonged chromatin-binding kinetics upon cell stimulation
    Lisa Hipp, Judith Beer, Oliver Kuchler, Matthias Reisser, Daniela Sinske, Jens Michaelis, J. Christof M. Gebhardt, Bernd Knöll · 2018 · Proceedings of the National Academy of Sciences
  25. Nucleosome allostery in pioneer transcription factor binding
    Cheng Tan, Shoji Takada · 2020 · Proceedings of the National Academy of Sciences
  26. Cooperative binding between distant transcription factors is a hallmark of active enhancers
    Rao, Satyanarayan, Ahmad, Kami, Ramachandran, Srinivas · 2021 · Molecular Cell
  27. SOX2 O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells
    Samuel A. Myers, Sailaja Peddada, Nilanjana Chatterjee, Tara Friedrich, Kiichrio Tomoda, Gregor Krings, Sean Thomas, Jason C. Maynard, Michael Broeker, Matthew Thomson et al. · 2016 · eLife
  28. Transcriptional enhancers and their communication with gene promoters
    Ray-Jones, Helen, Spivakov, Mikhail · 2021 · Cellular and Molecular Life Sciences
  29. Live-cell imaging reveals the dynamics of PRC2 and recruitment to chromatin by SUZ12-associated subunits
    Daniel T. Youmans, Jens C. Schmidt, Thomas R. Cech · 2018 · Genes & Development
  30. Mesoscale Modeling and Single-Nucleosome Tracking Reveal Remodeling of Clutch Folding and Dynamics in Stem Cell Differentiation
    Pablo Aurelio Gómez-García, Stephanie Portillo‐Ledesma, Maria Victoria Neguembor, Martina Pesaresi, Walaa Oweis, Talia Miriam Rohrlich, Stefan Wieser, Eran Meshorer, Tamar Schlick A, Maria Pia Cosma et al. · 2021 · Cell Reports
  31. ETV2 functions as a pioneer factor to regulate and reprogram the endothelial lineage
    Wuming Gong, Satyabrata Das, Javier E. Sierra-Pagán, Erik Skie, Nikita Dsouza, Thijs A Larson, Mary G. Garry, Edgar Luzete-Monteiro, Kenneth S. Zaret, Daniel J. Garry · 2022 · Nature Cell Biology
  32. Genesis of Chromatin and Transcription Dynamics in the Origin of Species
    Maria J.E. Koster, ‎Berend Snel, H. T. Marc Timmers · 2015 · Cell
  33. Regulatory principles governing the maternal-to-zygotic transition: insights from Drosophila melanogaster
    Danielle C. Hamm, Melissa M. Harrison · 2018 · Open Biology
  34. Dynamic chromatin technologies: from individual molecules to epigenomic regulation in cells
    Olivier Cuvier, Beat Fierz · 2017 · Nature Reviews Genetics
  35. Recent Progress in Light Sheet Microscopy for Biological Applications
    Krishnendu Chatterjee, Feby Wijaya Pratiwi, Frances Camille M. Wu, Peilin Chen, Bi‐Chang Chen · 2018 · Applied Spectroscopy
  36. Pou5f3, SoxB1, and Nanog remodel chromatin on high nucleosome affinity regions at zygotic genome activation
    Marina Veil, Lev Y. Yampolsky, Björn Andreas Grüning, Daria Onichtchouk · 2019 · Genome Research
  37. dCas9-targeted locus-specific protein isolation method identifies histone gene regulators
    Chiahao Tsui, Carla J. Inouye, Michaella J. Levy, Andrew C. Lu, Laurence A. Florens, Michael P. Washburn, Robert Tjian · 2018 · Proceedings of the National Academy of Sciences
  38. Endocrine disruptors of sex hormone activities
    Lyuba Varticovski, Diana A. Stavreva, Andrew McGowan, Raashed Raziuddin, Gordon L. Hager · 2021 · Molecular and Cellular Endocrinology
  39. Non–beta blocker enantiomers of propranolol and atenolol inhibit vasculogenesis in infantile hemangioma
    Caroline Theresa Seebauer, Matthew S. Graus, Lan Ji Huang, Alex J. McCann, Jill Wylie‐Sears, Frank R. Fontaine, Tara Karnezis, David Zurakowski, Steven J. Staffa, Frédéric A. Meunier et al. · 2021 · Journal of Clinical Investigation
  40. Genome-wide footprinting: ready for prime time?
    Myong‐Hee Sung, Songjoon Baek, Gordon L. Hager · 2016 · Nature Methods
  41. Visualizing transcription: key to understanding gene expression dynamics
    Ineke Brouwer, Tineke Laura Lenstra · 2019 · Current Opinion in Chemical Biology
  42. Single-particle tracking photoactivated localization microscopy of membrane proteins in living plant tissues
    Vincent Bayle, Jean-Bernard Fiche, Claire Burny, Matthieu Pierre Platre, Marcelo Nöllmann, Alexandre Martinière, Yvon Jaillais · 2021 · Nature Protocols
  43. Homotypic clusters of transcription factor binding sites: A model system for understanding the physical mechanics of gene expression
    Daphne Ezer, Nicolae Radu Zabet, Boris Adryan · 2014 · Computational and Structural Biotechnology Journal
  44. Rapid dynamics of general transcription factor TFIIB binding during preinitiation complex assembly revealed by single-molecule analysis
    Zhengjian Zhang, Brian P. English, Jonathan B. Grimm, Stephanie A. Kazane, Wenxin Hu, Albert Tsai, Carla J. Inouye, Changjiang You, Jacob Piehler, Peter G. Schultz et al. · 2016 · Genes & Development
  45. Live-cell single particle tracking of PRC1 reveals a highly dynamic system with low target site occupancy
    Huseyin, Miles K., Klose, Robert J. · 2021 · Nature Communications
  46. Choosing the right label for single-molecule tracking in live bacteria: side-by-side comparison of photoactivatable fluorescent protein and Halo tag dyes
    Nehir Banaz, Jarno Mäkelä, Stephan Uphoff · 2018 · Journal of Physics D Applied Physics
  47. Mechanisms of Enhancer-Promoter Interactions in Higher Eukaryotes
    Pavel G Georgiev, Olga Kyrchanova · 2021 · International Journal of Molecular Sciences
  48. Single-molecule imaging of chromatin remodelers reveals role of ATPase in promoting fast kinetics of target search and dissociation from chromatin
    Jee Min Kim, Pat Visanpattanasin, Vivian Jou, Sheng Liu, Xiaona Tang, Qinsi Zheng, Kai Yu Li, Jonathan C. Snedeker, Luke D. Lavis, Timothée Lionnet et al. · 2021 · eLife
  49. BRD2 Compartmentalizes the Accessible Genome
    Liang-Qi Xie, Peng Dong, Yifeng Qi, Tsung-Han S. Hsieh, Brian P. English, Seolkyoung Jung, Xing-Qi Chen, M. De Marzio, R. Casellas, Howard Y. Chang et al. · 2022 · Nature Genetics
  50. A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency
    Liangqi Xie, Sharon E. Torigoe, Jifang Xiao, Daniel H. Mai, Li Li, Fred P. Davis, Peng Dong, Hervé Marie-Nelly, Jonathan B. Grimm, Luke D. Lavis et al. · 2017 · Genes & Development
  51. Chromatin scanning by dynamic binding of pioneer factors
    Zaret, Kenneth S., Lerner, Jonathan, Iwafuchi-Doi, Makiko · 2016 · Molecular Cell
  52. Speed–Specificity Trade-Offs in the Transcription Factors Search for Their Genomic Binding Sites
    Tamar Jana, Sagie Brodsky, Naama Barkai · 2021 · Trends in Genetics
  53. FACT is recruited to the +1 nucleosome of transcribed genes and spreads in a Chd1-dependent manner
    Celia Jerónimo, Andrew Angel, Vu Q. C. Nguyen, Jee Min Kim, Christian Poitras, Élie Lambert, Pierre Collin, Jane Mellor, Carl Wu, François Robert · 2021 · Molecular Cell
  54. Lightsheet localization microscopy enables fast, large-scale, and three-dimensional super-resolution imaging
    Chieh-Han Lu, Wei‐Chun Tang, Yen‐Ting Liu, Shu‐Wei Chang, Frances Camille M. Wu, Chin‐Yi Chen, Yun-Chi Tsai, Shun‐Min Yang, Chiung‐Wen Kuo, Yasushi Okada et al. · 2019 · Communications Biology
  55. Kinetic principles underlying pioneer function of GAGA transcription factor in live cells
    Xiaona Tang, Taibo Li, Sheng Liu, Jan Wiśniewski, Qinsi Zheng, Yikang S. Rong, Luke D. Lavis, Carl Wu · 2022 · Nature Structural & Molecular Biology
  56. Transcription Factor Dynamics: One Molecule at a Time
    Kaustubh Wagh, Diana A. Stavreva, Arpita Upadhyaya, Gordon L. Hager · 2023 · Annual Review of Cell and Developmental Biology
  57. Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis
    Koenecke, Nina, Johnston, Jeff, Gaertner, Bjoern, Natarajan, Malini, Zeitlinger, Julia · 2016 · Genome Biology
  58. Single-molecule tracking of transcription protein dynamics in living cells: seeing is believing, but what are we seeing?
    Timothée Lionnet, Carl Wu · 2021 · Current Opinion in Genetics & Development
  59. Eukaryotic transcription factors can track and control their target genes using DNA antennas
    Milagros Castellanos, Nivin Mothi, Víctor Muñoz · 2020 · Nature Communications
  60. Tuning Transcription Factor Availability through Acetylation-Mediated Genomic Redistribution
    Pakavarin Louphrasitthiphol, Robert Siddaway, Alessia Loffreda, Vivian Pogenberg, Hans J. Friedrichsen, Alexander Schepsky, Zhiqiang Zeng, Min M. Lu, Thomas Strub, Rasmus Freter et al. · 2020 · Molecular Cell
  61. Smart lattice light-sheet microscopy for imaging rare and complex cellular events
    Yu Shi, Jimmy S. Tabet, Daniel Edward Milkie, Timothy A. Daugird, Chelsea Q. Yang, Alex T. Ritter, Andrea Giovannucci, Wesley R. Legant · 2024 · Nature Methods
  62. Following the tracks: How transcription factor binding dynamics control transcription
    W. D. de Jonge, Heta P. Patel, J. V. Meeussen, T. Lenstra · 2022 · Biophysical Journal
  63. Direct Observation of Cell-Cycle-Dependent Interactions between CTCF and Chromatin
    Harsha Agarwal, Matthias Reisser, Celina Wortmann, J. Christof M. Gebhardt · 2017 · Biophysical Journal
  64. Reversible Disruption of Specific Transcription Factor-DNA Interactions Using CRISPR/Cas9
    S. Ali Shariati, Antonia A. Dominguez, Shicong Xie, Marius Wernig, Lei S. Qi, Jan Marcel Skotheim · 2019 · Molecular Cell
  65. Live-cell single-molecule dynamics of PcG proteins imposed by the DIPG H3.3K27M mutation
    Roubina Tatavosian, Huy Nguyen Duc, Thao Ngoc Huynh, Dong Fang, Benjamin Schmitt, Xiaodong Shi, Yiming Deng, Christopher J. Phiel, Tingting Yao, Zhiguo Zhang et al. · 2018 · Nature Communications
  66. Single-molecule dynamics and genome-wide transcriptomics reveal that NF-kB (p65)-DNA binding times can be decoupled from transcriptional activation
    Andrea Callegari, Christian Sieben, Alexander Benke, David M. Suter, Beat Fierz, Davide Mazza, Suliana Manley · 2019 · PLoS Genetics
  67. Nonreciprocal and Conditional Cooperativity Directs the Pioneer Activity of Pluripotency Transcription Factors
    Li, Sai, Zheng, Eric Bo, Zhao, Li, Liu, Shixin · 2019 · Cell Reports
  68. Mechanisms, pathways and strategies for rejuvenation through epigenetic reprogramming
    Andrea Cipriano, Mahdi Moqri, Sun Y. Maybury‐Lewis, Ryan Rogers-Hammond, Tineke Anna de Jong, Alexander Parker, Sajede Rasouli, Hans Robert Schöler, David A. Sinclair, Vittorio Sebastiano · 2023 · Nature Aging
  69. Single-molecule and super-resolution imaging of transcription in living bacteria
    Mathew Stracy, Achillefs N. Kapanidis · 2017 · Methods
  70. Breaking the Axial Diffraction Limit: A Guide to Axial Super‐Resolution Fluorescence Microscopy
    Wenjie Liu, Kimani C. Toussaint, Chukwuemeka Okoro, Dazhao Zhu, Youhua Chen, Cuifang Kuang, Xü Liu · 2018 · Laser & Photonics Review
  71. Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields
    Andrews Akwasi Agbleke, Assaf Amitai, Jason D. Buenrostro, Aditi Chakrabarti, Lingluo Chu, Anders S. Hansen, Kristen M. Koenig, Ajay S. Labade, Sirui Liu, Tadasu Nozaki et al. · 2020 · Molecular Cell
  72. Single-molecule imaging correlates decreasing nuclear volume with increasing TF-chromatin associations during zebrafish development
    Matthias Reisser, Anja Palmer, Achim P. Popp, Christopher Jahn, Gilbert Weidinger, J. Christof M. Gebhardt · 2018 · Nature Communications
  73. Multifunctional Intrinsically Disordered Regions in Transcription Factors
    Matti Valdimarsson, Kateryna Nitsenko, Pétur O. Heidarsson · 2023 · Chemistry - A European Journal
  74. Three-Dimensional Super-Resolution in Eukaryotic Cells Using the Double-Helix Point Spread Function
    Alexander R. Carr, Aleks Ponjavic, Srinjan Basu, James T. McColl, Ana Mafalda Santos, Simon J. Davis, Ernest D. Laue, David Klenerman, Steven F. Lee · 2017 · Biophysical Journal
  75. Orphan quality control shapes network dynamics and gene expression
    Kevin G. Mark, SriDurgaDevi Kolla, Jacob D. Aguirre, Danielle M. Garshott, Stefan Schmitt, Diane L. Haakonsen, Christina Xu, Lukas Kater, Georg Kempf, Brenda Martínez-González et al. · 2023 · Cell
  76. The needle and the haystack: single molecule tracking to probe the transcription factor search in eukaryotes
    Matteo Mazzocca, Tom Fillot, Alessia Loffreda, Daniela Gnani, Davide Mazza · 2021 · Biochemical Society Transactions
  77. How motif environment influences transcription factor search dynamics: Finding a needle in a haystack
    Iris Dror, Remo Rohs, Yael Mandel‐Gutfreund · 2016 · BioEssays
  78. Sequence and chromatin determinants of transcription factor binding and the establishment of cell type-specific binding patterns
    Divyanshi Srivastava, Shaun Mahony · 2019 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
  79. Live-cell imaging reveals the spatiotemporal organization of endogenous RNA polymerase II phosphorylation at a single gene
    Linda S. Forero-Quintero, William Raymond, Tetsuya Handa, Matthew N. Saxton, Tatsuya Morisaki, Hiroshi Kimurâ, Édouard Bertrand, Brian E. Munsky, Timothy J. Stasevich · 2021 · Nature Communications
  80. DNA residence time is a regulatory factor of transcription repression
    Karen Clauß, Achim P. Popp, Lena Schulze, Johannes Hettich, Matthias Reisser, Laura Escoter-Torres, N. Henriette Uhlenhaut, J. Christof M. Gebhardt · 2017 · Nucleic Acids Research
  81. Dynamical reorganization of the pluripotency transcription factors Oct4 and Sox2 during early differentiation of embryonic stem cells
    Paula Verneri, Camila Vázquez Echegaray, Camila Oses, Martín Stortz, Alejandra Guberman, Valeria Levi · 2020 · Scientific Reports
  82. A model of active transcription hubs that unifies the roles of active promoters and enhancers
    Zhu, Iris, Song, Wei, Ovcharenko, Ivan, Landsman, David · 2021 · Nucleic Acids Research
  83. An RNA-centric view of transcription and genome organization
    Jonathan E. Henninger, Richard A. Young · 2024 · Molecular Cell
  84. A licensing step links AID to transcription elongation for mutagenesis in B cells
    Stephen P. Methot, Ludivine C. Litzler, Poorani Ganesh Subramani, Anil K. Eranki, Heather Fifield, Anne‐Marie Patenaude, Julian C. Gilmore, Gabriel E. Santiago, Halil Bagci, Jean‐François Côté et al. · 2018 · Nature Communications
  85. Emerging Imaging and Genomic Tools for Developmental Systems Biology
    Zhe J. Liu, Philipp Keller · 2016 · Developmental Cell
  86. Activity-Dependent Dynamics of the Transcription Factor of cAMP-Response Element Binding Protein in Cortical Neurons Revealed by Single-Molecule Imaging
    Hironobu Kitagawa, Noriyuki Sugo, Masatoshi Morimatsu, Yoshiyuki Arai, Toshio Yanagida, Nobuhiko Yamamoto · 2016 · Journal of Neuroscience
  87. Emerging roles of transcriptional enhancers in chromatin looping and promoter-proximal pausing of RNA polymerase II
    Huan Meng, Blaine Bartholomew · 2017 · Journal of Biological Chemistry
  88. Geometry of the nucleus: a perspective on gene expression regulation
    Maxime Woringer, Xavier Darzacq, Ignacio Izeddin · 2014 · Current Opinion in Chemical Biology
  89. Subcellular western blotting of single cells
    Kevin A. Yamauchi, Amy E. Herr · 2017 · Microsystems & Nanoengineering
  90. Single-Molecule Studies in Live Cells
    Ji Hoon Yu · 2016 · Annual Review of Physical Chemistry
  91. Small-Molecule Inhibitors of the SOX18 Transcription Factor
    Frank R. Fontaine, Jeroen Paardekooper Overman, Mehdi Denis Moustaqil, Sreeman Kumar Mamidyala, Angela A. Salim, Kamesh Narasimhan, Nina Prokoph, Avril A. B. Robertson, Linda H.L. Lua, Kirill A. Alexandrov et al. · 2017 · Cell chemical biology
  92. Mapping the Dynamics of the Glucocorticoid Receptor within the Nuclear Landscape
    Martín Stortz, Diego M. Presman, Luciana Bruno, Paolo Annibale, María Virginia Dansey, Gerardo Burton, Enrico Gratton, Adalı́ Pecci, Valeria Levi · 2017 · Scientific Reports
  93. USP1-Trapping Lesions as a Source of DNA Replication Stress and Genomic Instability
    Coleman, Kate E., Yin, Yandong, Lui, Sarah Kit Leng, Keegan, Sarah, Fenyo, David, Smith, Duncan J., Rothenberg, Eli, Huang, Tony T. · 2022 · Nature Communications
  94. Chromatin sequesters pioneer transcription factor Sox2 from exerting force on DNA
    Tuan N. Nguyen, Sai Li, Jeremy T.-H. Chang, John W. Watters, Htet Ng, Adewola Osunsade, Yael David, Shixin Liu · 2022 · Nature Communications
  95. Transcription factor binding kinetics and transcriptional bursting: What do we really know?
    Matteo Mazzocca, Emanuele Colombo, Andrea Callegari, Davide Mazza · 2021 · Current Opinion in Structural Biology
  96. Recent Advances in Single-Molecule Tracking and Imaging Techniques
    Trung D. Nguyen, Yuan‐I Chen, Limin H. Chen, Hsin‐Chih Yeh · 2023 · Annual Review of Analytical Chemistry
  97. Next-Generation Drugs and Probes for Chromatin Biology: From Targeted Protein Degradation to Phase Separation
    Kateřina Čermáková, H. Courtney Hodges · 2018 · Molecules
  98. Functional and mechanistic studies of XPC DNA-repair complex as transcriptional coactivator in embryonic stem cells
    Claudia Cattoglio, Elisa Zhang, Ivan Grubisic, Kunitoshi Chiba, Yick W. Fong, Robert Tjian · 2015 · Proceedings of the National Academy of Sciences
  99. Inferring quantity and qualities of superimposed reaction rates from single molecule survival time distributions
    Matthias Reisser, Johannes Hettich, Timo Kuhn, Achim P. Popp, Andreas Große-Berkenbusch, J. Christof M. Gebhardt · 2020 · Scientific Reports
  100. Protein–DNA binding in high-resolution
    Shaun Mahony, B. Franklin Pugh · 2015 · Critical Reviews in Biochemistry and Molecular Biology