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Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut
Open accessAbstract
SUMMARY To study how microbes establish themselves in a mammalian gut environment, we colonized germ-free mice with microbial communities from human, zebrafish and termite guts, human skin and tongue, soil, and estuarine microbial mats. Bacteria from these foreign environments colonized and persisted in the mouse gut; their capacity to metabolize dietary and host carbohydrates, and bile acids, correlated with colonization success. Co-housing mice harboring these xenomicrobiota with one another, with mice harboring native gut microbiota, and germ-free ‘bystanders’ revealed the success of particular bacterial taxa in colonizing an empty gut habitat and guts with established communities. Unanticipated patterns of ecological succession were observed; for example, a soil-derived bacterium dominated even in the presence of bacteria from other gut communities (zebrafish and termite), and human-derived bacteria colonized germ-free mice before mouse-derived organisms. This approach generalizes to address a variety of mechanistic questions about succession, including succession in the context of microbiota-directed therapeutics.
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Ectopic colonization of oral bacteria in the intestine drives T H 1 cell induction and inflammation
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Metadata
- Authors
- Seedorf, H., Griffin, N. W., Ridaura, V. K., Reyes, A., Cheng, J., Rey, F. E., Smith, M. I., Simon, G. M., Scheffrahn, R. H., Woebken, D., Spormann, A. M., Van Treuren, W., Ursell, L. K., Pirrung, M., Robbins-Pianka, A., Cantarel, B. L., Lombard, V., Henrissat, B., Knight, R., & Gordon, J. I.
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2014-10
- Volume
- 159
- Issue
- 2
- Pages
- 253-266
- ISSN
- 0092-8674 (ISSN-L)
- OpenAlex
- W2141158722
- Cited by
- 360
- References
- 12
- FWCI
- 11.32
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Seedorf, H., Griffin, N. W., Ridaura, V. K., Reyes, A., Cheng, J., Rey, F. E., Smith, M. I., Simon, G. M., Scheffrahn, R. H., Woebken, D., Spormann, A. M., Van Treuren, W., Ursell, L. K., Pirrung, M., Robbins-Pianka, A., Cantarel, B. L., Lombard, V., Henrissat, B., Knight, R., & Gordon, J. I. (2014). Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut. Cell. https://doi.org/10.1016/j.cell.2014.09.008
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.