Building Robust Transcriptomes with Master Splicing Factors

Jangi, Mohini, Sharp, Phillip A.·2014·Cell
DOI 10.1016/j.cell.2014.09.054

Cited by (141)

Items 101–141 of 141

  1. From genes to traits: Trends in RNA-binding proteins and their role in plant trait development: A review
    Shazia Rehman, Saraj Bahadur, Wei Xia, Chen Runan, Maroof Ali, Zainab Maqbool · 2024 · International Journal of Biological Macromolecules
  2. An ultra-conserved poison exon in the Tra2b gene encoding a splicing activator is essential for male fertility and meiotic cell division
    Caroline Dalgliesh, Saad Aldalaqan, Christian Atallah, Andrew J. Best, Emma Scott, Ingrid E. Ehrmann, George Merces, Joel Mannion, Barbora Badurova, Raveen Sandher et al. · 2025 · The EMBO Journal
  3. Nucleotide-level distance metrics to quantify alternative splicing implemented in TranD
    Adalena V. Nanni, James E. Titus‐McQuillan, Kinfeosioluwa S Bankole, Francisco J. Pardo-Palacios, Sarah A. Signor, Srna Vlaho, Oleksandr V. Moskalenko, Alison M. Morse, Rebekah L. Rogers, Ana Conesa et al. · 2024 · Nucleic Acids Research
  4. Sam68 splicing regulation contributes to motor unit establishment in the postnatal skeletal muscle
    Elisa De Paola, Laura Forcina, Laura Pelosi, Simona Pisu, Piergiorgio La Rosa, Eleonora Cesari, Carmine Nicoletti, Luca Madaro, Neri Mercatelli, Filippo Biamonte et al. · 2020 · Life Science Alliance
  5. Splicing to keep splicing: A feedback system for cellular homeostasis and state transition
    Zhonghao Guo, Xurui Zhang, Yachen Li, Yule Chen, Yungang Xu · 2025 · Clinical and Translational Medicine
  6. Transcription Factors and Splice Factors—Interconnected Regulators of Stem Cell Differentiation
    Madison Mehlferber, Muge N. Kuyumcu‐Martinez, Clint L. Miller, Gloria Sheynkman · 2023 · Current Stem Cell Reports
  7. Significant upregulation of U1 and U4 spliceosomal snRNAs by ATP nanoliposomes explains acceleration of wound healing, due to increased pre-mRNA processing to functional mRNA
    Girish Jayant Kotwal, Michael D. Martin, Sufan Chien · 2018 · Nanomedicine Nanotechnology Biology and Medicine
  8. Alternative splicing in stem cells and development: research progress and emerging technologies
    Yan Jin, Xiaolin Liang, Xiangting Wang · 2025 · Cell Regeneration
  9. Minor differences in the molecular machinery mediating regulated membrane fusion has major impact on metabolic health
    Ismael Valladolid‐Acebes, Teresa Daraio, Kerstin Brismar, Tomas G. M. Hökfelt, Christina Bark · 2016 · Adipocyte
  10. RNA binding protein with multiple splicing (RBPMS) promotes contractile phenotype splicing in human embryonic stem cell–derived vascular smooth muscle cells
    Aishwarya G. Jacob, Ilias Moutsopoulos, Alex Petchey, Rafael Kollyfas, Vincent R. Knight-Schrijver, Irina I Mohorianu, Sanjay Sinha, Christopher W. J. Smith · 2024 · Cardiovascular Research
  11. Goat Boule: Isoforms identification, mRNA expression in testis and functional study and promoter methylation profiles
    Xiaoyan Zhang, Shuai Yu, Qing Yang, Ke Wang, Sihuan Zhang, Chuanying Pan, Hailong Yan, Ruihua Dang, Chuzhao Lei, Hong Chen et al. · 2018 · Theriogenology
  12. A Deep Exon Cryptic Splice Site Promotes Aberrant Intron Retention in a Von Willebrand Disease Patient
    John G. Conboy · 2021 · International Journal of Molecular Sciences
  13. Dysfunctional gene splicing in glucose metabolism may contribute to Alzheimer's disease
    Shengfeng Deng, Yi Peng, Mingliang Xu, Qian Yi, Jianguo Feng · 2022 · Chinese Medical Journal
  14. Definition of germ layer cell lineage alternative splicing programs reveals a critical role for Quaking in specifying cardiac cell fate
    William Samuel Fagg, Naiyou Liu, Ulrich Braunschweig, Karen Larissa Pereira de Castro, Xiaoting Chen, Frederick S. Ditmars, Steven G. Widen, John Paul Donohue, Katalin Módis, William K. Russell et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  15. Elucidation of the Landscape of Alternatively Spliced Genes and Features in the Dorsal Striatum of Aggressive/Aggression-Deprived Mice in the Model of Chronic Social Conflicts
    Vladimir N. Babenko, Olga E. Redina, Дмитрий Александрович Смагин, Irina L. Kovalenko, Anna G. Galyamina, N. N. Kudryavtseva · 2023 · Genes
  16. Transformer2 proteins protect breast cancer cells from accumulating replication stress by ensuring productive splicing of checkpoint kinase 1
    Andrew J. Best, Katherine James, Gerald Hysenaj, Alison Jane Tyson-Capper, David J. Elliott · 2015 · Frontiers of Chemical Science and Engineering
  17. RBPMS promotes contractile smooth muscle splicing and alters phenotypic behaviour of human embryonic stem cell derived vascular smooth muscle cells
    Aishwarya G. Jacob, Ilias Moutsopoulous, Alex Petchey, Irina I Mohorianu, Sanjay Sinha, Christopher W. J. Smith · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  18. An RBPMS-driven splicing regulatory axis including MBNL1, RBFOX2, and QK promotes smooth muscle cell contractile identity
    Yuling Huang, Rafael Kollyfas, Ruth Partridge, Clare D. Gooding, Sanjay Sinha, Irina Mohorianu, Aishwarya G. Jacob, Christopher W. J. Smith · 2025 · Nucleic Acids Research
  19. Tnpo3 controls splicing of the pre-mRNA encoding the canonical TCR α chain of iNKT cells
    Norimasa Iwanami, Andreas S. Richter, Katarzyna Sikora, Thomas L. J. Boehm · 2023 · Nature Communications
  20. Experimental approaches to studying the nature and impact of splicing variation in zebrafish
    Maria-Cristina Keightley, Sebastian Markmiller, Christopher G. Love, John E.J. Rasko, Graham John Lieschke, Joan K. Heath · 2016 · Methods in cell biology
  21. Ultra‐Conserved Poison Exons Enable Rapid and Safe Splicing Factor Gene Expression Switches: A Hypothesis
    Caroline Dalgliesh, Farimah Ghorbani, Adam J. M. Wollman, David J. Elliott · 2025 · BioEssays
  22. Comprehensive Transcriptomic and Epitranscriptomic Profiling of Hepatitis B Virus Transcripts in Two Hepatocellular Carcinoma Cell Lines
    Qinan Zhang, Bohan Zhang, Lei Wang, Yongjian Liu, Jingwan Han, Lei Jia, Hanping Li, Xiaolin Wang, Jingyun Li, Changyuan Yu et al. · 2025 · Genes
  23. Regulation of oncogenic C-terminal truncated p53β protein isoform expression by SRSF3–UPF1 splicing and surveillance axis
    Jiwon Jeong, Dawon Hong, Tae Young Park, Jung Hur, Taeyoung Koo, Sunjoo Jeong-Yu · 2026 · Cell & Bioscience
  24. A transcriptomic census reveals that Rbfox contributes to a broad but selective recapitulation of peripheral tissue splicing patterns in the thymus
    Kathrin Jansen, Noriko Shikama‐Dorn, Moustafa Attar, Stefano Maio, Maria Lopopolo, David Buck, Georg A. Holländer, Stephen Nicholas Sansom · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  25. Mechanism of an alternative splicing switch mediated by cell-specific and general splicing regulators
    Yi An Yang, Giselle C. Lee, Erick E Nakagaki-Silva, Yuling Huang, Matthew Peacey, Ruth Partridge, Clare Gooding, Christopher W. J. Smith · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  26. Characterization of regulatory mechanisms for BIM exon 3 alternative splicing
    Malini Bhadra · 2017
  27. Large-scale study of rna processing alterations in multiple cancers
    Babita Singh · 2017 · LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)
  28. Functional impact of alternative splicing in vertebrate proteomes across tissues and cell types
    Tapial Rodríguez, Javier Javier · 2018 · LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)
  29. An introduction to the themed issue on RNA biology in China
    Zhe Wu · 2020 · Essays in Biochemistry
  30. Faculty Opinions recommendation of A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate.
    Leslie Sieburth · 2018 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  31. Faculty Opinions recommendation of The RNA-binding protein caper is required for sensory neuron development in Drosophila melanogaster.
    Stephanie L. Gupton, Shalini Menon · 2018 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  32. Faculty Opinions recommendation of Antisense Oligonucleotides Promote Exon Inclusion and Correct the Common c.-32-13T>G GAA Splicing Variant in Pompe Disease.
    Sue Fletcher · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  33. Faculty Opinions recommendation of Rapid and dynamic alternative splicing impacts the arabidopsis cold response transcriptome.
    Daniel S. P. Schubert · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  34. An in vivo parallelized reporter assay to uncover tissue-specific splicing regulatory sequences in a multicellular animal
    Sanjana Bhatnagar, Jade Ho, Nour H Sadek, Isha Singh, Michael Zoberman, Bina Koterniak, Yufang Liu, Daniel D. Fusca, Asher D. Cutter, Alan M Moses et al. · 2026 · Nucleic Acids Research
  35. Contribution of U2AF1, NCBP1 and eIF4A3 to the control of pluripotency maintenance and cell fate determination
    Abdelhamid Mahdi Laaref · 2017 · theses.fr (ABES)
  36. Locus-specific LINE-1 mRNA expression reflects cell-type- and stimulus-specific senescence states
    Minh N. Tran, Sihan Liu, Melody Baddoo, Emily C. Stow, Sudesh K Srivastav, Victoria P. Belancio · 2026 · Nucleic Acids Research
  37. Recursive mutational robustness in cancer through intra- and inter-genic compensation
    Rohan Dandage, Aldo Hernández-Corchado, Ariel Madrigal, Arsham Mikaeili Namini, Jichen Wang, Bong Gun Choi, Hani Goodarzi, Hamed Shateri Najafabadi · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  38. Nonsense-mediated mRNA decay and associated splicing patterns in neurodevelopmental disorders
    Polina E. Anisimova, Anastasia E. Filat’eva, Victor S. Tarabykin, Elena Kondakova · 2026 · Frontiers in Molecular Biosciences
  39. Environment-driven transcriptomic reprogramming modulates the plasticity of amylose content and chalkiness in rice
    Yueqi Zhang, Zhen Wang, Siqi Ning, Dian Li, Zhonghua Sheng, Shikai Hu, Guiai Jiao, Gaoneng Shao, Lihong Xie, Ling Wang et al. · 2026 · The Crop Journal
  40. The crosstalk between alternative splicing and histone ubiquitination modulates fast chemical reprogramming to pluripotency
    Qiang Deng, Xi Chen, Yu-Han Li, Yi-Xin Wang, Yue-Qin He, Dylan Zhu, Guo Chen, Sai-Yong Zhu · 2026 · Stem Cell Reports
  41. Coordinated alterations in SWI/SNF chromatin remodeling complex, mRNA splicing and mRNA methylation as hallmarks of salivary gland adenoid cystic carcinoma (SACC)
    Katarzyna Stawarz, Natalia Rusetska, Hubert Salamaga, Szymon Kubala, Irena Paczkowska, Pawel Cwiek, Alicja Berezowska, Maryam Jozghorbani, Jakkapong Kluebsoongnoen, Magdalena Wilga et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)