Single-Cell Genomics: A Stepping Stone for Future Immunology Discoveries
Cited by (167)
Items 101–167 of 167
- Single-Cell RNA Sequencing to Disentangle the Blood SystemJean Acosta, Daniel Ssozi, Peter van Galen · 2021 · Arteriosclerosis Thrombosis and Vascular Biology
- TET mediated epigenetic regulation of iNKT cell lineage fate choice and functionAgeliki Tsagaratou · 2018 · Molecular Immunology
- Using single cell analysis for translational studies in immune mediated diseases: Opportunities and challengesSiddhartha M. Sharma, Louis Gioia, Brian T. Abe, Marie Holt, Anne E. Costanzo, Lisa Kain, Andrew I. Su, Luc Teyton · 2018 · Molecular Immunology
- SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing dataImad Abugessaisa, Akira Hasegawa, Shuhei Noguchi, Mélissa Cardon, Kazuhide Watanabe, Masataka Takahashi, Harukazu Suzuki, Shintaro Katayama, Juha Kere, Takeya Kasukawa · 2022 · iScience
- Single-Cell Sequencing Facilitates Elucidation of HIV Immunopathogenesis: A Review of Current LiteratureSilvère D. Zaongo, Vijay Harypursat, Yaokai Chen · 2022 · Frontiers in Immunology
- BSDE: barycenter single-cell differential expression for case–control studiesMengqi Zhang, F Richard Guo · 2022 · Bioinformatics
- Haematopoietic ageing through the lens of single-cell technologiesPaulina M. Strzelecka, Frédérik Damm · 2021 · Disease Models & Mechanisms
- Tissue-specific therapy in immune-mediated kidney diseases: new ARGuments for targeting the IL-23/IL-17 axisChristian F. Krebs, Jan‐Eric Turner, Jan-Hendrik Riedel, Ulf Panzer · 2021 · Journal of Clinical Investigation
- The Promise of Single-cell Technology in Providing New Insights Into the Molecular Heterogeneity and Management of Acute Lymphoblastic LeukemiaHolly C.L. Pearson, Kooper V Hunt, Toby N. Trahair, Richard B. Lock, Heather J Lee, Charles Edo de Bock · 2022 · HemaSphere
- Secretory GFP reconstitution labeling of neighboring cells interrogates cell–cell interactions in metastatic nichesMisa Minegishi, Takahiro Kuchimaru, Kaori Nishikawa, Takayuki Isagawa, Satoshi Iwano, Kei Iida, Hiromasa Hara, Shizuka Miura, Marika Sato, Shigeaki Watanabe et al. · 2023 · Nature Communications
- Single-Cell Technologies to Decipher the Immune Microenvironment in Myeloid Neoplasms: Perspectives and OpportunitiesChiara Caprioli, Iman Nazari, Sara Milovanovic, Pier Giuseppe Pelicci · 2022 · Frontiers in Oncology
- Immunophenotyping myelodysplastic neoplasms: the role of flow cytometry in the molecular classification eraEvgenia Verigou, Theodora Chatzilygeroudi, Vasileios Lazaris, Anne-Lise de Lastic, Argiris S. Symeonidis · 2024 · Frontiers in Oncology
- Tracking the immune response with single-cell genomicsKathryn E. Yost, Howard Y. Chang, Ansuman T. Satpathy · 2019 · Vaccine
- Adverse effects of nicotine on cardiogenic differentiation from human embryonic stem cells detected by single-cell RNA sequencingBiaochuan He, Jing Chen, Miao Tian, Jimei Chen, Chengbin Zhou, Yanqiu Ou, Sheng Wang, Xiaohong Li, Jian Zhuang · 2020 · Biochemical and Biophysical Research Communications
- Single-Cell Analysis of CD4 T Cells in Type 1 Diabetes: From Mouse to Man, How to Perform Mechanistic StudiesSiddhartha M. Sharma, Jeremy Pettus, Michael Everett Gottschalk, Brian T. Abe, Peter A. Gottlieb, Luc Teyton · 2019 · Diabetes
- Deep learning methods and applications in single-cell multimodal data integrationFranklin Vinny Medina Nunes, Luiza Marques Prates Behrens, Rafael Diogo Weimer, Gabriela Flores Gonçalves, Guilherme da Silva Fernandes, Márcio Dorn · 2025 · Molecular Omics
- Inferring changes in histone modification during cell differentiation by ancestral state estimation based on phylogenetic trees of cell types: Human hematopoiesis as a model caseKanako O. Koyanagi · 2019 · Gene
- The network structural entropy for single-cell RNA sequencing data during skin agingZhilong Liu, Hai Lin, Xiang Li, Hao Xue, Yuer Lu, Fei Xu, Jianwei Shuai · 2024 · Briefings in Bioinformatics
- In Silico Evaluation of HN-N07 Small Molecule as an Inhibitor of Angiogenesis and Lymphangiogenesis Oncogenic Signatures in Non-Small Cell Lung CancerLung-Ching Chen, Ntlotlang Mokgautsi, Yu‐Cheng Kuo, Alexander T.H. Wu, Hsu‐Shan Huang · 2023 · Biomedicines
- Multiplexed detection and isolation of viable low-frequency cytokine-secreting human B cells using cytokine secretion assay and flow cytometry (CSA-Flow)Ayman Rezk, Rui Li, Amit Bar‐Or · 2020 · Scientific Reports
- Single-cell RNA-seq and V(D)J profiling of immune cells in COVID-19 patientsXiaoying Fan, Xiangyang Chi, Wenji Ma, Suijuan Zhong, Yunzhu Dong, Wei Zhou, Wenyu Ding, H. Christina Fan, Chonghai Yin, Zhentao Zuo et al. · 2020 · medRxiv
- Prognostic and immunological value of LTB4R in pan-cancerSidan Long, Shuangshuang Ji, Kunmin Xiao, Peng Xue, Shijie Zhu · 2021 · Mathematical Biosciences & Engineering
- Improved protocol for single-nucleus RNA-sequencing of frozen human bladder tumor biopsiesSofie S. Schmøkel, Iver Nordentoft, Sia V. Lindskrog, Philippe Lamy, Michael Knudsen, Jørgen Bjerggaard Jensen, Lars Dyrskjøt · 2023 · Nucleus
- Integrating single-cell RNA sequencing data to genome-wide association analysis data identifies significant cell types in influenza A virus infection and COVID-19Yixin Zou, Xifang Sun, Yifan Wang, Yidi Wang, Xiangyu Ye, Junlan Tu, Rongbin Yu, Peng Huang · 2023 · Briefings in Functional Genomics
- Leveraging Single-Cell RNA-seq Data to Uncover the Association Between Cell Type and Chronic Liver DiseasesXiangyu Ye, Julong Wei, Ming Yue, Yan Wang, Hongbo Chen, Yongfeng Zhang, Yifan Wang, Meiling Zhang, Peng Huang, Rongbin Yu · 2021 · Frontiers in Genetics
- Single cell and immunity: Better understanding immune cell heterogeneities with single cell sequencingDongsheng Chen, Yonglun Luo, Genhong Cheng · 2022 · Clinical and Translational Medicine
- Quality assessment of single-cell RNA sequencing data by coverage skewness analysisImad Abugessaisa, Shuhei Noguchi, Mélissa Cardon, Akira Hasegawa, Kazuhide Watanabe, Masataka Takahashi, Harukazu Suzuki, Shintaro Katayama, Juha Kere, Takeya Kasukawa · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Cross-species single-cell transcriptomic analysis of animal gastric antrum reveals intense porcine mucosal immunityXiaodan Wang, Fan Hong, Haonan Li, Yalong Wang, Mengxian Zhang, Shibo Lin, Hui Liang, Hongwen Zhou, Yuan Liu, Ye‐Guang Chen · 2023 · Cell Regeneration
- MitoTracer facilitates the identification of informative mitochondrial mutations for precise lineage reconstructionXuexin Yu, Jing Hu, Yuhao Tan, Mingyao Pan, Hongyi Zhang, Bo Li · 2025 · PLoS Computational Biology
- Single-Cell TranscriptomicsMarta Prieto‐Vila, Yusuke Yamamoto, Ryou‐u Takahashi, Takahiro Ochiya · 2021 · Springer eBooks
- A novel variable neighborhood search approach for cell clustering for spatial transcriptomicsAleksandra Djordjevic, Junhua Li, Shuangsang Fang, Lei Cao, Marija Ivanovic · 2024 · Gigabyte
- Prognostic value and immunological role of Kruppel-like transcription factor 9 gene in pan-carcinomaWeichao Cai, Yecheng Li, Weihong Cao · 2022 · Medicine
- Single cell and immunity: Better understanding immune cell heterogeneities with single‐cell sequencingDongsheng Chen, Yonglun Luo, Genhong Cheng · 2022 · Clinical and Translational Discovery
- Single-cell RNA Sequencing and Spatial Transcriptomic Technologies and Applications in Exploring Gastric Cancer: A ReviewChunxiao Zhu, Jiang‐Jiang Qin · 2023 · Oncology Advances
- cytoKernel: robust kernel embeddings for assessing differential expression of single-cell dataTusharkanti Ghosh, Ryan Michael Baxter, Souvik Seal, Victor G Lui, Pratyaydipta Rudra, Thao Vu, Elena W.Y. Hsieh, Debashis Ghosh · 2025 · Bioinformatics
- Regulator of nonsense transcripts 3B is a prognostic biomarker and associated with immune cell infiltration in lung squamous cell and hepatocellular carcinomaPengcheng Li, Mi Zhou, Xiaoli Gan, Chaoyi Yuan, Ganxun Li, Guan-nan Jin, Zeyang Ding · 2024 · Discover Oncology
- Unravelling immune cell complexity in atherosclerosisMarc Clément, Ziad Mallat · 2018 · Cardiovascular Research
- Pan-Cancer Analysis of the Prognostic and Immunological Role of Thymocyte-Expressed Positive Selection-Associated Protein 1 (TESPA1) in Human TumorsLingyu Liu, Yufei Liu · 2022 · Research Square
- MARS-seq2.0: an experimental and analytical pipeline for indexed sorting combined with single-cell RNA sequencing v1Hadas Keren Shaul, Hadas Keren‐Shaul, Ephraim Kenigsberg, Diego Adhemar Jaitin, Eyal David, Franziska Paul, Amos Tanay, Ido Amit · 2019
- Advanced omics approaches in liver transplant settings: current applications and future prospectivesHuijuan Wang, Yifeng Zhou, Lu Yu, Zhengtao Liu, Shusen Zheng · 2025 · Frontiers in Immunology
- Single-cell multi-omics reveals archetypal regulatory programs shared across T cell subsetsSarah K. Walker, Joris van der Veeken, Alexander Yu Rudensky, Yuri Pritykin · 2026 · Cell Reports
- Uncovering the role of integrated stress in Alzheimer’s disease through single-cell and transcriptomic analysisNing Sheng, Hong-Yan Wang, Kun Song, Yong Zheng, Zi-Ying Zong, GE Jin-wen, Dahua Wu, Y Wang · 2026 · Scientific Reports
- Transcriptome-Wide Analysis of Neutrophil-Related Circ_22232 in Neuroinflammation from Ischemic Stroke MiceZheng Sun, Youdong Zhou, Yanting Liu, Ran Luo, Chunlei Tian, Qianxue Chen · 2023 · Brain Sciences
- Evolution of MicrogliaElena Guffart, Marco Prinz · 2024 · Advances in neurobiology
- Pathogenicity of acquired immunity in human diseasesKiyoshi Hirahara · 2019 · Seminars in Immunopathology
- Lineages and molecular heterogeneity in the developing nervous systemGioele La Manno · 2018 · Figshare
- Single-Cell TranscriptomicsMarta Prieto‐Vila, Yusuke Yamamoto, Ryou‐u Takahashi, Takahiro Ochiya · 2018 · Springer eBooks
- Single-cell transcriptomic analysis identifies neocortical developmental differences between human and mouseZiheng Zhou, Shuguang Wang, Dengwei Zhang, Xiaosen Jiang, Jie Li, Ying Gu, Hai‐Xi Sun · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Microfluidic Applications in Single-cell Genomic, Transcriptomic and Proteomic AnalysisDalia M. Dhingra, Aik Teong Ooi, Pedro Méndez, Shu Wang, Saurabh Gulati, Adam Sciambi, David Ruff · 2020 · Royal Society of Chemistry eBooks
- scIVA: Single Cell Database and Tools for Interactive Visualisation and AnalysisLiam Crowhurst, Onkar Mulay, Nathan J. Palpant, Quan Hoang Nguyen · 2021 · Springer eBooks
- Faculty Opinions recommendation of Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics.Siddharth Dey, Matt Smith · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- 15th International Symposium on IgANephropathy – IIgANN 2018, Buenos Aires, September 27-29, 2018: Summaries2018 · Kidney Diseases
- General and Emerging Concepts of ImmunitySalvador Iborra, Andrés Hidalgo · 2022 · Elsevier eBooks
- Towards Unraveling the Puzzle of KMT2A-rearranged Infant Acute Lymphoblastic LeukemiaPauline Schneider · 2023 · Utrecht University Repository (Utrecht University)
- Single-cell multimodal profiling of monocytes reveals diverse phenotypes and alterations linked to cardiovascular disease risksAlexander C. Bashore, Chenyi Xue, Eunyoung Kim, Hanying Yan, Lucie Y. Zhu, Huize Pan, Michael D. Kissner, Leila Saxby Ross, Hanrui Zhang, Mingyao Li et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- How Fish Responded to Dietary Methylmercury Exposure? A Single-Cell Transcriptomic AnalysisBingxin Yin, Junhao Fang, Yong Liu, Wen‐Xiong Wang, Xun Wang · 2024 · SSRN Electronic Journal
- Effects of hybridization and gene flow on gene co-expression networksRogini Runghen, Daniel I. Bolnick · 2025 · Genetics
- Code to cure: computational genomics and proteomics in biomedical research and therapeuticsTaru Singh, Sameer Singh, Uzma Iftekhar, Aleena Taufiq · 2025 · Elsevier eBooks
- Single-cell sequencing analysis focused on cancer immunotherapyLuciane Tsukamoto Kagohara, Joseph A. Tandurella · 2025 · Oxford University Press eBooks
- Targeting FAM83D triggers tumor cell senescence via cGAS-STING signaling activation and reprograms TAMs to combat gliomaHongwei Liu, Xuelei Lin, Luohuan Dai, Wen Zhang, Yihao Zhang, Na Liu, Yueshuo Li, Jens Jeshu Peters, Jia Gu, Kang Peng et al. · 2026 · Journal of Experimental & Clinical Cancer Research
- Decoding cellular communications and interactions between immune cells by using single-cell approachesPierre Bost · 2020 · theses.fr (ABES)
- Application of Multivariate Gaussian Convolution and Mixture Models for Identifying Key Biomarkers Underlying Variability in Transcriptomic Profiles and the Diversity of Therapeutic ResponsesBastien Chassagnol · 2023 · theses.fr (ABES)
- Identification and validation of neuroinflammation related lncRNA PVT1 with transcriptome-wide analysis in cerebral ischemia-reperfusion injuryXiaochan Xiao, Huodan Yu, Haichuan Zhou, Wenjian Lu, Yanping Zeng, Qianxue Chen · 2026 · Frontiers in Neurology
- From the invasive front to organotropic pre-metastatic niches: spatial immune regulatory networks governing cholangiocarcinoma dissemination and metastasis-intercepting immunotherapyLonghao Zhang, Kai Zhang, Zhihong Chen, Xin Lu · 2026 · Frontiers in Immunology
- Data-centric feedback loops for next-generation immunotherapy developmentRotem Shalita, Ido Amit · 2026 · Nature Biomedical Engineering
- A Multidimensional Framework for Interpreting Macrophage Markers in the Era of Cellular HeterogeneityAlessandro Palma · 2026 · Immunology
- Single‐Cell Reference Mapping and Transcriptomic Analysis Identify Fibroblast‐Related ECM Remodeling During Electroacupuncture Treatment for Tendon RepairYang Wu, Boyun Lu, Zitian Zheng, Yucheng Zhu, Xinrui Fu, Meng Yang, Zhenghui Qiu, Chong Zhang, Jin Cheng, Jianquan Wang et al. · 2026 · Advanced Healthcare Materials