The Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis

de la Torre-Ubieta, Luis, Stein, Jason L., Won, Hyejung, Opland, Carli K., Liang, Dan, Lu, Daning, Geschwind, Daniel H.·2018·Cell
DOI 10.1016/j.cell.2017.12.014

Cited by (354)

Items 301–354 of 354

  1. Transcription factor motifs associated with anterior insula gene-expression underlying mood disorder phenotypes
    Dhivya Arasappan, Simon Bodo Eickhoff, Charles B. Nemeroff, Hans A. Hofmann, Mbemba Jabbi · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  2. Investigating prenatal stress in a stem cell model of human neuronal development
    Lilia Papst · 2019 · Elektronische Hochschulschriften der LMU München (Ludwig-Maximilians-Universität München)
  3. Genome-wide discovery of gene regulatory networks in the midgestation mouse placenta
    Rebekah R. Starks · 2020
  4. Revealing the transcription factor regulatory context of human specific cortical development using single-cell multi-omics
    Yan Wu, Blue B. Lake, Brandon Chin Sos, Song Chen, Thu Elizabeth Duong, Yun C. Yung, Weixiu Dong, Siddarth Limaye, Jerold J. M. Chun, Kun Zhang · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  5. Heterogeneous Fates of Simultaneously-Born Neurons During Early Corticogenesis
    Elia Magrinelli, Esther Klingler, Natalia Baumann, Robin Jan Wagener, Christelle Glangetas, Camilla Bellone, Denis Jabaudon · 2021 · Research Square
  6. [Facioacromelic disostosis with metal retardation (author's transl)].
    J M Cantú, A Hernández, Z Nazará-Cazorla, C Pacheco, S Armendares · 1974 · PubMed
  7. Molecular regulation of fetal brain development in pigs
    Monica Strawn · 2021
  8. Neurodevelopmental Disorders: Epigenetic Implications and Potential Analysis Methods
    Rwik Sen · 2022 · Nutritional neurosciences
  9. Faculty Opinions recommendation of The Epigenetic State of PRDM16-Regulated Enhancers in Radial Glia Controls Cortical Neuron Position.
    Vı́ctor Borrell · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  10. Comparative profiling of chromatin open state of various cells and tissues for dissecting the epigenetic causes of various biological processes
    Jian Feng Wu, Jinliang Gao, Shuyan Zhang, Tao Luo, Wei Dai, Jianhui Ling, Jinke Wang · 2020
  11. Faculty Opinions recommendation of Allele-specific open chromatin in human iPSC neurons elucidates functional disease variants.
    Leah Claire Kottyan · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  12. Faculty Opinions recommendation of The genetic architecture of the human cerebral cortex.
    Geneviève Konopka · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  13. Leveraging interindividual variability of regulatory activity refines genetic regulation of gene expression in schizophrenia
    Maris Alver, Nikolaos M. R. Lykoskoufis, Anna Ramisch, Halit Ongen, Emmanouil T. Dermitzakis · 2021 · Research Square
  14. Faculty Opinions recommendation of Chromatin accessibility dynamics in a model of human forebrain development.
    Debra L. Silver · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  15. Faculty Opinions recommendation of Beyond the Exome: The Non-coding Genome and Enhancers in Neurodevelopmental Disorders and Malformations of Cortical Development.
    Heather C. Mefford · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  16. Faculty Opinions recommendation of Inherited and de novo genetic risk for autism impacts shared networks.
    Fowzan Sami Alkuraya · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  17. Faculty Opinions recommendation of Chromatin accessibility dynamics in a model of human forebrain development.
    Vijay Kumar Tiwari, Jonathan McComb · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  18. Faculty Opinions recommendation of Inherited and de novo genetic risk for autism impacts shared networks.
    R. Frank Kooy · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  19. Faculty Opinions recommendation of JMJD3 and UTX determine fidelity and lineage specification of human neural progenitor cells.
    Vijay Kumar Tiwari, Arun Mariappan · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  20. Faculty Opinions recommendation of Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex.
    Vı́ctor Borrell · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  21. Elucidating the molecular pathology of DEPDC5 mutation induced mTOR-hyperactivation associated with epilepsy and autism spectrum disorder
    Mattson Jones · 2022
  22. Characterization of the evolution of long non-coding RNAs in the developing cerebral cortex transcriptome
    David A. Morales-Vicente · 2022 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
  23. Genetic Variation Altering Cortical Progenitor Function Leads to Human Brain Evolution and Interindividual Differences in Human Brain Structure
    Madison R. Glass, Jason L. Stein, Eva S. Anton · 2023 · Wiley eBooks
  24. Bibliography
    2023 · The MIT Press eBooks
  25. xWAS Analysis in Neuropsychiatric Disorders by Integrating Multi-Molecular Phenotype Quantitative Trait Loci and GWAS Summary Data
    Lingxue Luo, Tao Pang, Haohao Zheng, Chao Liufu, Suhua Chang · 2023 · SSRN Electronic Journal
  26. Shared and unique chromatin accessibility and 3D functional interactions of substance use disorder loci implicate cell types beyond the brain
    Bao Khanh Trang, Alessandra Chesi, Sylvanus Toikumo, James A. Pippin, Matthew C. Pahl, Joan M. O’Brien, Laufey Thora Amundadottir, Kevin M. Brown, Wenli Yang, Jaclyn E. Welles et al. · 2024 · medRxiv
  27. eLife Assessment: Epigenetic insights into GABAergic development in Dravet Syndrome iPSC and therapeutic implications
    Sacha B. Nelson · 2024 · eLife
  28. Reviewer #2 (Public Review): Epigenetic insights into GABAergic development in Dravet Syndrome iPSC and therapeutic implications
    2024 · eLife
  29. Epigenetic insights into GABAergic development in Dravet Syndrome iPSC and therapeutic implications
    Jens Schuster, Xi Hua Lu, Yonglong Dang, Joakim Klar, Amelie S. Wenz, Niklas Dahl, Xingqi Chen · 2024 · eLife
  30. Author response: Epigenetic insights into GABAergic development in Dravet Syndrome iPSC and therapeutic implications
    Jens Schuster, Xi Lü, Yonglong Dang, Joakim Klar, Amelie S. Wenz, Niklas Dahl, Xingqi Chen · 2024 · eLife
  31. The Role of the Epigenome in Brain Development, Function, and Disease
    Schahram Akbarian, John F. Fullard, Kiran Girdhar, Panos Roussos · 2025 · Oxford University Press eBooks
  32. Regulatory logic of human cortex evolution by combinatorial perturbations
    Adrianos Skaros, Alessandro Vitriolo, Oliviero Leonardi, Veronica Finazzi, Marlene F. Pereira, Filippo Prazzoli, Sebastiano Trattaro, Juan Moriano, Daniele Capocefalo, Carlo Emanuele Villa et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  33. In vivo transition in chromatin accessibility during differentiation of deep-layer excitatory neurons in the neocortex
    Seishin Sakai, Yurie Maeda, Mai Saeki, Daijiro Konno, Keita Kawaji, Fumio Matsuzaki, Yutaka Suzuki, Yukiko Gotoh, Yusuke Kishi · 2025 · Development
  34. The emerging sequence grammar of 3D genome organisation
    Liezel Tamon, James Ashford, Matthew Nicholls, Marella F. T. R. De Bruijn, Aleksandr B. Sahakyan · 2025 · Human Genetics
  35. Generating 3D mouse organoids for cortex development and evo-devo
    Hanwen Yu, Yan Liu · 2025 · Developmental Cell
  36. Additional file 15 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  37. Additional file 5 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  38. Additional file 17 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  39. Additional file 2 of Modern human changes in regulatory regions implicated in cortical development
    Juan Moriano, Cedric A. Boeckx · 2020 · Figshare
  40. Additional file 4 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  41. Additional file 14 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  42. Additional file 2 of xWAS analysis in neuropsychiatric disorders by integrating multi-molecular phenotype quantitative trait loci and GWAS summary data
    Lingxue Luo, Tao Pang, Haohao Zheng, Chao Liufu, 素华 常 · 2024 · Figshare
  43. Additional file 3 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  44. Additional file 16 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  45. Additional file 1 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  46. Additional file 1 of xWAS analysis in neuropsychiatric disorders by integrating multi-molecular phenotype quantitative trait loci and GWAS summary data
    Lingxue Luo, Tao Pang, Haohao Zheng, Chao Liufu, Chang, Suhua · 2024 · Figshare
  47. Additional file 13 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  48. Additional file 7 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  49. Additional file 6 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  50. Additional file 8 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  51. Additional file 2 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
    Mawla, Alex M., Talitha van der Meulen, Mark O. Huising · 2023 · Figshare
  52. NRXN1 haploinsufficiency converges on RNA processing during cortical development, with partial transcriptomic concordance in adult autism cortex
    Xi Lai, Jing Wen · 2026 · Progress in Neuro-Psychopharmacology and Biological Psychiatry
  53. Spatially resolved chromatin architectures in mammalian brain tissues
    Zhenping Chen 陈振平, Maoni Guo, Lin Zhang, Hao Yu, Xinxin Wang, Xinrui Yu, Mingyue Chen, Junjie Lv, Zhisong Chen, Changjun Peng et al. · 2026 · Nature Methods
  54. Variation in enhancer activity across brain regions defines neurological disease risk and shapes cellular pathology
    Hannah K. Ramcharan, Yasmine N. Sami, Kathryn Hazel, Chidera Okeke, Zia Barnard, An T. Hoang, Scott McCallum, Chesna Apere, Wenjuan Du, Megan Madden et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)