Multiscale Evolutionary Dynamics of Host-Associated Microbiomes

Ferreiro, Aura, Crook, Nathan, Gasparrini, Andrew J., Dantas, Gautam·2018·Cell
DOI 10.1016/j.cell.2018.02.015

Cited by (128)

Items 101–128 of 128

  1. Microbial diversity and ecological complexity emerging from environmental variation and horizontal gene transfer in a simple mathematical model
    S. G. Babajanyan, Sofya K. Garushyants, Yuri I. Wolf, Eugene V. Koonin · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  2. Multi-omic Understanding of the Evolution of Xenobiotic Tolerance in Bacterial Isolates and Communities
    Tayte Campbell · 2019 · Open Scholarship Institutional Repository (Washington University in St. Louis)
  3. Autopoietic symbiogenesis in secondary metabolism
    Juan Bueno · 2020 · Elsevier eBooks
  4. The Persistence Potential of Mobile Genetic Elements
    Teng Wang, Lingchong You · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  5. Gut Microbiota in Brain diseases
    Mahmoud Salami · 2021 · Elsevier eBooks
  6. Universal adaptive evolution strategy of probiotic Lactobacillus plantarum to gut selection pressure from humans, mice and zebrafish
    Shi Wei Huang, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda‐Ferre, Yoshiki Vázquez‐Baeza, Qiyun Zhu, Chenchen Ma et al. · 2021 · Research Square
  7. Effect of short-course antibiotics on the antimicrobial resistance profile of colonizing gut bacteria in the ICU
    Christian Munck, Ravi U. Sheth, Edward Cuaresma, Stephania Stump, Jessica Weidler, Philip Zachariah, David H. Chong, Anne‐Catrin Uhlemann, Julian A. Abrams, Harris H. Wang et al. · 2019
  8. Intra- and inter-species interactions drive early phases of invasion in mice gut microbiota
    Melis Gencel, Gisela Marrero Cofino, Cang Hui, Zahra Sahaf, Louis Gauthier, Derek Tsang, Dana J. Philpott, Sheela Ramathan, Alfredo Menéndez, Shimon Bershtein et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  9. Additional file 3 of Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome
    Shi Wei Huang, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda‐Ferre, Yoshiki Vázquez‐Baeza, Qiyun Zhu, Chenchen Ma et al. · 2021 · Figshare
  10. The Gut Microbiome-Induced Changes in Brain Immune System and Their Role in Epilepsy
    Ramajayam Govindan, Maheshkumar Poomarimuthu, S. N. Arumugam, Senthilkumar Kalimuthu, Selvaraj Jayaraman, Christhunesa Soundararajan Christudass · 2024 · Springer eBooks
  11. Metagenomic coverage bias at transcription start sites is correlated with gene expression
    Gordon Qian, Izaak Coleman, Tal Korem, Joshua W. K. Ho · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  12. Joint consideration of selection and microbial generation count provides unique insights into evolutionary and ecological dynamics of holobionts
    William S. Pearman, Allen G. Rodrigo, Anna W. Santure · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  13. Doblin: inferring dominant clonal lineages from high-resolution DNA barcoding time series
    Melis Gencel, David Gagné-Leroux, Adrian W.R. Serohijos · 2025 · Bioinformatics
  14. Additional file 5 of Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
    Lucas P. Henry, Julien F. Ayroles · 2021 · Figshare
  15. Additional file 3 of Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
    Lucas P. Henry, Julien F. Ayroles · 2021 · Figshare
  16. Additional file 2 of Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
    Lucas P. Henry, Julien F. Ayroles · 2021 · Figshare
  17. Additional file 1 of The effect of short-course antibiotics on the resistance profile of colonizing gut bacteria in the ICU: a prospective cohort study
    Christian Munck, Ravi U. Sheth, Edward Cuaresma, Jessica Weidler, Stephania Stump, Philip Zachariah, Chong, David H., Uhlemann, Anne-Catrin, Julian A. Abrams, Harris H. Wang et al. · 2020 · Figshare
  18. Additional file 2 of The effect of short-course antibiotics on the resistance profile of colonizing gut bacteria in the ICU: a prospective cohort study
    Christian Munck, Sheth, Ravi U., Edward Cuaresma, Jessica Weidler, Stephania Stump, Philip Zachariah, Chong, David H., Uhlemann, Anne-Catrin, Julian A. Abrams, Harris H. Wang et al. · 2020 · Figshare
  19. Additional file 4 of Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
    Lucas P. Henry, Julien F. Ayroles · 2021 · Figshare
  20. Additional file 2 of Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome
    Huang, Shi, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda‐Ferre, Vázquez-Baeza, Yoshiki, Qiyun Zhu, Ma, Chenchen et al. · 2021 · Figshare
  21. Additional file 1 of Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
    Lucas P. Henry, Julien F. Ayroles · 2021 · Figshare
  22. Additional file 1 of Microbial diversity and ecological complexity emerging from environmental variation and horizontal gene transfer in a simple mathematical model
    S. G. Babajanyan, Sofya K. Garushyants, Yuri I. Wolf, Koonin, Eugene V. · 2024 · Figshare
  23. Additional file 3 of The effect of short-course antibiotics on the resistance profile of colonizing gut bacteria in the ICU: a prospective cohort study
    Christian Munck, Ravi U. Sheth, Edward Cuaresma, Jessica Weidler, Stephania Stump, Philip Zachariah, Chong, David H., Uhlemann, Anne-Catrin, Julian A. Abrams, Harris H. Wang et al. · 2020 · Figshare
  24. Additional file 6 of Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
    Lucas P. Henry, Julien F. Ayroles · 2021 · Figshare
  25. Microbiomes in mushroom-forming fungi
    In Hyup Bae, Hyun Seok Kim, Yong-Hwan Lee · 2026 · Panfungi
  26. Gut Microbiome Disruption in Shelter Cats with Feline Panleukopenia: Virome Co-Detection and Enteric Dysbiosis
    David Purec, Vlad Iorgoni, I. Iancu, János Dégi, Corina Pascu, L. Costinar, Corina Badea, Alexandru Gligor, Paula Nicoleta Nistor, Alexandru Udrea et al. · 2026 · Biology
  27. Oral, gut, and skin microbiota characterization in patients with heart valve disease with or without infective endocarditis: a pilot study
    M. Mengoli, Filomena Boccia, M. Barone, F. Mele, L. Bertolino, E. D. Della Ratta, M. De Feo, E. Durante-Mangoni, S. Turroni, P. Brigidi et al. · 2026 · Microbiology spectrum
  28. Targeting gut microbiota: Potential mechanisms in the pathogenesis of type 2 diabetes mellitus and emerging translational intervention strategies
    Fu-Jian Xie, Miao Zhang, Wan-Ting Li, Wei-Ye Zhou, Hai-Bei Ma, Yu Xu, Li-ming Bi · 2026 · World Journal of Diabetes