The Human Gut Microbiome: From Association to Modulation

Schmidt, Thomas S.B., Raes, Jeroen, Bork, Peer·2018·Cell
DOI 10.1016/j.cell.2018.02.044

Cited by (853)

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  50. Additional file 1 of Alterations in gut microbiota and host transcriptome of patients with coronary artery disease
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  51. Additional file 7 of Comprehensive analysis of gut microbiota of a healthy population and covariates affecting microbial variation in two large Japanese cohorts
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  53. Additional file 4 of Comprehensive analysis of gut microbiota of a healthy population and covariates affecting microbial variation in two large Japanese cohorts
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  54. Additional file 2 of Comprehensive analysis of gut microbiota of a healthy population and covariates affecting microbial variation in two large Japanese cohorts
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  55. Additional file 1 of Comprehensive analysis of gut microbiota of a healthy population and covariates affecting microbial variation in two large Japanese cohorts
    Jonguk Park, Kumiko Kato, Haruka Murakami, Koji Hosomi, Kumpei Tanisawa, Takashi Nakagata, Harumi Ohno, Kana Konishi, Kawashima, Hitoshi, Yi‐An Chen et al. · 2021 · Figshare
  56. Additional file 3 of Comprehensive analysis of gut microbiota of a healthy population and covariates affecting microbial variation in two large Japanese cohorts
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  77. Additional file of Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements
    Dieter M. Tourlousse, Koji Narita, Takamasa Miura, Mitsuo Sakamoto, Akiko Ohashi, Keita Shiina, Matsuda, Masami, Miura, Daisuke, Mamiko Shimamura, Yoshifumi Ohyama et al. · 2021 · Figshare
  78. Additional file 2 of Alterations in gut microbiota and host transcriptome of patients with coronary artery disease
    Liuying Chen, Xuanting Mou, Li, Jingjing, Li, Miaofu, Ye, Caijie, Xiaofei Gao, Liu, Xiaohua, Ma, Yunlong, Xu, Yizhou, Zhong, Yigang · 2024 · Figshare
  79. Additional file 6 of Trans-ethnic gut microbial signatures of prediabetic subjects from India and Denmark
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  80. Additional file 3 of Trans-ethnic gut microbial signatures of prediabetic subjects from India and Denmark
    Nishal Kumar Pinna, Anjana, Ranjit Mohan, Saxena, Shruti, Anirban Dutta, Visvanathan Gnanaprakash, Gnanavadivel Rameshkumar, Aswath, Sukumaran, Srividhya Raghavan, Coimbatore Subramaniam Shanthi Rani, Radha Venkatesan et al. · 2021 · Figshare
  81. Additional file 1 of Endogenous small intestinal microbiome determinants of transient colonisation efficiency by bacteria from fermented dairy products: a randomised controlled trial
    Edoardo Zaccaria, Tim Klaassen, Annick M. E. Alleleyn, Jos Boekhorst, Tamara Smokvina, Michiel Kleerebezem, Freddy J. Troost · 2023 · Figshare
  82. Additional file 2 of Microbiota characterization in Blastocystis-colonized and Blastocystis-free school-age children from Colombia
    Sergio Castañeda, Muñoz, Marina, Ximena Villamizar, Paula C. Hernández, Luis Reinel Vásquez, Raul Yhossef Tito, Ramírez, Juan David · 2020 · Figshare
  83. Additional file 1 of Trans-ethnic gut microbial signatures of prediabetic subjects from India and Denmark
    Nishal Kumar Pinna, Anjana, Ranjit Mohan, Saxena, Shruti, Anirban Dutta, Visvanathan Gnanaprakash, Gnanavadivel Rameshkumar, Aswath, Sukumaran, Srividhya Raghavan, Coimbatore Subramaniam Shanthi Rani, Radha Venkatesan et al. · 2021 · Figshare
  84. Additional file 3 of A realistic benchmark for differential abundance testing and confounder adjustment in human microbiome studies
    Jakob Wirbel, Morgan Essex, Forslund, Sofia Kirke, Zeller, Georg · 2024 · Figshare
  85. Additional file 4 of A realistic benchmark for differential abundance testing and confounder adjustment in human microbiome studies
    Jakob Wirbel, Morgan Essex, Forslund, Sofia Kirke, Zeller, Georg · 2024 · Figshare
  86. Additional file 1 of Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements
    Dieter M. Tourlousse, Koji Narita, Takamasa Miura, Mitsuo Sakamoto, Akiko Ohashi, Keita Shiina, Matsuda, Masami, Daisuke Miura, Mamiko Shimamura, Yoshifumi Ohyama et al. · 2021 · Figshare
  87. Additional file 2 of A realistic benchmark for differential abundance testing and confounder adjustment in human microbiome studies
    Jakob Wirbel, Morgan Essex, Forslund, Sofia Kirke, Zeller, Georg · 2024 · Figshare
  88. Additional file 1 of Host-specific probiotics feeding influence growth, gut microbiota, and fecal biomarkers in buffalo calves
    Varada, Vinay Venkatesh, Kumar, Sachin, Supriya Chhotaray, Amrish Kumar Tyagi · 2022 · Figshare
  89. Additional file 11 of Metabolic independence drives gut microbial colonization and resilience in health and disease
    Watson, Andrea R., Jessika Füssel, Iva Veseli, Johanna Zaal DeLongchamp, Marisela Silva, Florian Trigodet, Karen Lolans, Alon Shaiber, Fogarty, Emily, Runde, Joseph M. et al. · 2023 · Figshare
  90. Additional file 2 of Metabolic independence drives gut microbial colonization and resilience in health and disease
    Watson, Andrea R., Jessika Füssel, Iva Veseli, Johanna Zaal DeLongchamp, Marisela Silva, Florian Trigodet, Karen Lolans, Alon Shaiber, Fogarty, Emily, Runde, Joseph M. et al. · 2023 · Figshare
  91. Additional file 1 of Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
    Jakob Wirbel, Konrad Zych, Morgan Essex, Nicolai Karcher, Ece Kartal, Guillem Salazar, Peer Bork, Shinichi Sunagawa, Zeller, Georg · 2021 · Figshare
  92. Additional file 6 of Metabolic independence drives gut microbial colonization and resilience in health and disease
    Watson, Andrea R., Jessika Füssel, Iva Veseli, Johanna Zaal DeLongchamp, Marisela Silva, Florian Trigodet, Karen Lolans, Alon Shaiber, Fogarty, Emily, Runde, Joseph M. et al. · 2023 · Figshare
  93. Additional file 1 of A realistic benchmark for differential abundance testing and confounder adjustment in human microbiome studies
    Jakob Wirbel, Morgan Essex, Forslund, Sofia Kirke, Zeller, Georg · 2024 · Figshare
  94. Additional file 10 of Comparison study of differential abundance testing methods using two large Parkinson disease gut microbiome datasets derived from 16S amplicon sequencing
    Wallen, Zachary D. · 2021 · Figshare
  95. Additional file 1 of coda4microbiome: compositional data analysis for microbiome cross-sectional and longitudinal studies
    M. Luz Calle, Meritxell Pujolassos, Susin, Antoni · 2024 · Figshare
  96. Additional file 4 of Endogenous small intestinal microbiome determinants of transient colonisation efficiency by bacteria from fermented dairy products: a randomised controlled trial
    Edoardo Zaccaria, Tim Klaassen, Annick M. E. Alleleyn, Jos Boekhorst, Tamara Smokvina, Michiel Kleerebezem, Freddy J. Troost · 2023 · Figshare
  97. Additional file 4 of Trans-ethnic gut microbial signatures of prediabetic subjects from India and Denmark
    Nishal Kumar Pinna, Anjana, Ranjit Mohan, Saxena, Shruti, Anirban Dutta, Visvanathan Gnanaprakash, Gnanavadivel Rameshkumar, Aswath, Sukumaran, Srividhya Raghavan, Coimbatore Subramaniam Shanthi Rani, Radha Venkatesan et al. · 2021 · Figshare
  98. Additional file 2 of Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
    Jakob Wirbel, Konrad Zych, Morgan Essex, Nicolai Karcher, Ece Kartal, Guillem Salazar, Peer Bork, Shinichi Sunagawa, Zeller, Georg · 2021 · Figshare
  99. Additional file 1 of Differences between the intestinal microbial communities of healthy dogs from plateau and those of plateau dogs infected with Echinococcus
    Liu, Jia, Jiang, Xiaojie, Wen Lei, Xi, Yuan, Zhang, Qing, Cai, Huixia, Ma, Xiao, Liu, Yufang, Wang, Wei, Na Liu et al. · 2024 · Figshare
  100. Additional file 2 of Microbial trend analysis for common dynamic trend, group comparison, and classification in longitudinal microbiome study
    Wang, Chan, Hu, Jiyuan, Blaser, Martin J., Li, Huilin · 2021 · Figshare