Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus

Quinodoz, Sofia A., Ollikainen, Noah, Tabak, Barbara, Palla, Ali, Schmidt, Jan Marten, Detmar, Elizabeth, Lai, Mason M., Shishkin, Alexander A. +12 more·2018·Cell

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Items 201–300 of 898

  1. The 3D Genome: From Structure to Function
    Tapan Kumar Mohanta, Awdhesh Kumar Mishra, Ahmed Al‐Harrasi · 2021 · International Journal of Molecular Sciences
  2. The long noncoding RNA Malat1 regulates CD8+ T cell differentiation by mediating epigenetic repression
    Jad N. Kanbar, Shengyun Ma, El Kim, Nadia S. Kurd, Matthew S Tsai, Tiffani Tysl, C. Widjaja, Abigail E Limary, Brian A. Yee, Zhaoren He et al. · 2022 · Journal of Experimental Medicine
  3. Transcriptionally inactive hepatitis B virus episome DNA preferentially resides in the vicinity of chromosome 19 in 3D host genome upon infection.
    Dingbin Tang, Hanqing Zhao, Yumeng Wu, B. Peng, Zhen-Chao Gao, Yin-Yan Sun, J. Duan, Yong-He Qi, Yunfei Li, Zhong-Min Zhou et al. · 2021 · Cell Reports
  4. maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks
    Tareian A. Cazares, Faiz W. Rizvi, Balaji Iyer, Xiaoting Chen, Michael Kotliar, Anthony T. Bejjani, Joseph A. Wayman, Omer A. Donmez, Benjamin Wronowski, Sreeja Parameswaran et al. · 2023 · PLoS Computational Biology
  5. Radial Organization in the Mammalian Nucleus
    Nicola Crosetto, Magda Bienko · 2020 · Frontiers in Genetics
  6. Recent clinical and mechanistic insights into vitiligo offer new treatment options for cell-specific autoimmunity
    K. Ezzedine, Rim Tannous, T. F. Pearson, J. E. Harris · 2025 · Journal of Clinical Investigation
  7. lncRedibly versatile: biochemical and biological functions of long noncoding RNAs
    Emily J. Shields, Ana Petracovici, Roberto Bonasio · 2019 · Biochemical Journal
  8. TADKB: Family classification and a knowledge base of topologically associating domains
    Tong Liu, Jacob Porter, Chenguang Zhao, Hao Zhu, Nan Wang, Zheng Sun, Yin-Yuan Mo, Zheng Wang · 2019 · BMC Genomics
  9. Polymer physics reveals a combinatorial code linking 3D chromatin architecture to 1D chromatin states
    Andrea Esposito, Simona Bianco, Andrea M. Chiariello, Alex Abraham, Luca Fiorillo, Mattia Conte, Raffaele Campanile, Mario Nicodemi · 2022 · Cell Reports
  10. Emerging roles of nuclear bodies in genome spatial organization
    Lin Shan, Pan Li, Hongtao Yu, Ling‐Ling Chen · 2023 · Trends in Cell Biology
  11. Availability of splicing factors in the nucleoplasm can regulate the release of mRNA from the gene after transcription
    Hodaya Hochberg-Laufer, Noa Neufeld, Yehuda Brody, Shani Nadav-Eliyahu, Rakefet Ben-Yishay, Yaron Shav‐Tal · 2019 · PLoS Genetics
  12. Phosphorylation-dependent regulation of messenger RNA transcription, processing and translation within biomolecular condensates
    Michael L. Nosella, Julie Deborah Forman-Kay · 2021 · Current Opinion in Cell Biology
  13. Single-cell Micro-C profiles 3D genome structures at high resolution and characterizes multi-enhancer hubs
    Honggui Wu, Jiankun Zhang, Longzhi Tan, Xiaoliang Sunney Xie · 2025 · Nature Genetics
  14. DEAD-Box Helicase 18 Counteracts PRC2 to Safeguard Ribosomal DNA in Pluripotency Regulation
    Hui Zhang, Zhongyang Wu, J. Yuyang Lu, Bo Huang, Hongwei Zhou, Wei Xie, Jianlong Wang, Xiaohua Shen · 2020 · Cell Reports
  15. CHROMATIX: computing the functional landscape of many-body chromatin interactions in transcriptionally active loci from deconvolved single cells
    Alan Perez-Rathke, Qiu Sun, Boshen Wang, Valentina Boeva, Zhifeng Shao, Jie Liang · 2020 · Genome biology
  16. Simultaneous profiling of chromatin architecture and transcription in single cells
    Jia-Le Qu, Jun-Yi Sun, Cai Zhao, Xin-Yi Liu, Xinyao Zhang, Shao-Shuai Jiang, Chao Wei, Hao-Peng Yu, Xiao-Xi Zeng, Lili Fan et al. · 2023 · Nature Structural & Molecular Biology
  17. Nuclear compartmentalization, dynamics, and function of regulatory DNA sequences
    Marion Cremer, Thomas John Cremer · 2018 · Genes Chromosomes and Cancer
  18. Essential Roles for RNA in Shaping Nuclear Organization
    Sofia A. Quinodoz, Mitchell Guttman · 2021 · Cold Spring Harbor Perspectives in Biology
  19. Epigenetic regulatory layers in the 3D nucleus
    Andréa Willemin, Dominik Szabó, Ana Pombo · 2024 · Molecular Cell
  20. DNA sequence-dependent chromatin architecture and nuclear hubs formation
    Kamel Jabbari, Maharshi Chakraborty, Thomas Wiehe · 2019 · Scientific Reports
  21. Predicting Genome Architecture: Challenges and Solutions
    P. Belokopytova, V. Fishman · 2021 · Frontiers in Genetics
  22. Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries
    Zubairul Islam, Bharath Saravanan, Kaivalya Walavalkar, Umer Farooq, Anurag Kumar Singh, Radhakrishnan Sabarinathan, Jitendra Thakur, Awadhesh Pandit, Steven Henikoff, Dimple Notani · 2023 · Genome Research
  23. Inter-chromosomal transcription hubs shape the 3D genome architecture of African trypanosomes
    Claudia Rabuffo, Markus R. Schmidt, Prateek Yadav, Pin Tong, Roberta Carloni, Anna Barcons-Simon, Raúl O. Cosentino, Stefan Krebs, Keith R. Matthews, Robin C. Allshire et al. · 2024 · Nature Communications
  24. Understanding and Engineering Chromatin as a Dynamical System across Length and Timescales
    Christopher P. Johnstone, Nathan Wang, Stuart A. Sevier, Kate E. Galloway · 2020 · Cell Systems
  25. Single‐cell imaging of genome organization and dynamics
    Liangqi Xie, Zhe J. Liu · 2021 · Molecular Systems Biology
  26. 3D spatial genome organization in the nervous system: From development and plasticity to disease
    Yuki Fujita, Sarshan R. Pather, Guo‐li Ming, Hongjun Song · 2022 · Neuron
  27. Revisiting 3D chromatin architecture in cancer development and progression
    Yuliang Feng, Siim Pauklin · 2020 · Nucleic Acids Research
  28. Pairwise Proximity‐Differentiated Visualization of Single‐Cell DNA Epigenetic Marks
    Jing Xue, Feng Chen, Li Su, Xiaowen Cao, Min Bai, Yue Zhao, Chunhai Fan, Yongxi Zhao · 2020 · Angewandte Chemie International Edition
  29. Chromatin modules and their implication in genomic organization and gene regulation
    Guido van Mierlo, Olga Pushkarev, Judith F. Kribelbauer, Bart Deplancke · 2022 · Trends in Genetics
  30. Compartmentalization with nuclear landmarks yields random, yet precise, genome organization
    Kartik D Kamat, Zhuohan Lao, Yifeng Qi, Yuchuan Wang, Jian Ma, Bin Zhang · 2023 · Biophysical Journal
  31. A maximum-entropy model to predict 3D structural ensembles of chromatin from pairwise distances with applications to interphase chromosomes and structural variants
    Guang Shi, Dave Thirumalai · 2023 · Nature Communications
  32. Multi-contact 4C: long-molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies
    Carlo Vermeulen, Amin Allahyar, Britta A. M. Bouwman, Peter H.L. Krijger, Marjon J.A.M. Verstegen, Geert Geeven, Christian Valdes‐Quezada, Ivo Renkens, Roy Straver, Wigard P. Kloosterman et al. · 2020 · Nature Protocols
  33. Dynamics and Functional Roles of Splicing Factor Autoregulation
    Fangyuan Ding, Christina J. Su, KeHuan Kuo Edmonds, Guohao Liang, Michael B. Elowitz · 2021 · Cell Reports
  34. Chromosome compartmentalization: causes, changes, consequences, and conundrums
    Heng Li, Christopher Playter, Priyojit Das, Rachel Patton McCord · 2024 · Trends in Cell Biology
  35. Chromatin compaction during confined cell migration induces and reshapes nuclear condensates
    Jessica Z. Zhao, Jing Xia, Clifford P. Brangwynne · 2024 · Nature Communications
  36. The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome
    Vinícius G. Contessoto, Ryan R. Cheng, Arya Hajitaheri, Esteban Dodero‐Rojas, Matheus F. Mello, Erez Lieberman Aiden, Peter Guy Wolynes, Michele Di Pierro, José N. Onuchic · 2020 · Nucleic Acids Research
  37. GRiNCH: simultaneous smoothing and detection of topological units of genome organization from sparse chromatin contact count matrices with matrix factorization
    Da-Inn Lee, Sushmita Roy · 2021 · Genome biology
  38. Liquid-liquid phase separation in Alzheimer’s disease
    Fu, Qinggang, Zhang, Bixiang, Chen, Xiaoping, Chu, Liang · 2024 · Journal of Molecular Medicine
  39. Chromatin fiber breaks into clutches under tension and crowding
    Shuming Liu, Xingcheng Lin, Bin Zhang · 2022 · Nucleic Acids Research
  40. Nuclear speckle biology: At the cross-roads of discovery and functional analysis
    Pankaj Chaturvedi, Andrew S. Belmont · 2024 · Current Opinion in Cell Biology
  41. Long-distance association of topological boundaries through nuclear condensates
    Amir Gamliel, Dario Meluzzi, Soohwan Oh, Nan Jiang, Eugin Destici, Michael G. Rosenfeld, Sreejith J. Nair · 2022 · Proceedings of the National Academy of Sciences
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    Lingfang Wang, Guankai Zhan, Yasen Maimaitiyiming, Yingfeng Su, Shitong Lin, Jinfeng Liu, Kunhui Su, Jiebo Lin, Shizhen Shen, Wentao He et al. · 2022 · Cell Reports
  43. SPIDR enables multiplexed mapping of RNA-protein interactions and uncovers a mechanism for selective translational suppression upon cell stress
    Erica Wolin, Jimmy K. Guo, Mario R. Blanco, Isabel Nadine Goronzy, Darvesh Gorhe, Wenzhao Dong, Andrew A. Perez, Abdurrahman Keskin, Elizabeth Valenzuela, Ahmed A. Abdou et al. · 2025 · Cell
  44. Explicit ion modeling predicts physicochemical interactions for chromatin organization
    Xingcheng Lin, Bin Zhang · 2023 · eLife
  45. Correlative single molecule lattice light sheet imaging reveals the dynamic relationship between nucleosomes and the local chromatin environment
    Timothy A. Daugird, Yu Shi, Katie L. Holland, Hosein Rostamian, Zhe J. Liu, Luke D. Lavis, Joseph Rodriguez, Brian D. Strahl, Wesley R. Legant · 2024 · Nature Communications
  46. CTCF depletion decouples enhancer-mediated gene activation from chromatin hub formation
    Magdalena A. Karpińska, Yi Zhu, Zahra Fakhraei Ghazvini, Shyam Ramasamy, Mariano Barbieri, T. B. Ngoc Cao, Natalie Varahram, Abrar Aljahani, Michael Lidschreiber, Argyris Papantonis et al. · 2025 · Nature Structural & Molecular Biology
  47. Emerging Roles of Repetitive and Repeat-Containing RNA in Nuclear and Chromatin Organization and Gene Expression
    Giuseppe Trigiante, Nerea Blanes Ruiz, Andrea Cerase · 2021 · Frontiers in Cell and Developmental Biology
  48. Dynamic chromosomal interactions and control of heterochromatin positioning by Ki‐67
    Tom van Schaik, Stefano Giustino Manzo, Athanasios E Vouzas, Ning Qing Liu, Hans Teunissen, Elzo de Wit, David M. Gilbert, Bas van Steensel · 2022 · EMBO Reports
  49. Simultaneous mapping of 3D structure and nascent RNAs argues against nuclear compartments that preclude transcription
    Isabel Nadine Goronzy, Sofia A. Quinodoz, Joanna W. Jachowicz, Noah Ollikainen, Prashant Bhat, Mitchell Guttman · 2022 · Cell Reports
  50. Long non-coding RNAs: roles in cellular stress responses and epigenetic mechanisms regulating chromatin
    Jeffrey A. Nickerson, Fatemeh Momen‐Heravi · 2024 · Nucleus
  51. Epigenomic and 3D genomic mapping reveals developmental dynamics and subgenomic asymmetry of transcriptional regulatory architecture in allotetraploid cotton
    Xian-Hui Huang, Yue-Jin Wang, Sai-Qun Zhang, L. Pei, J. You, Yuexuan Long, Jian-Ying Li, Xian-Long Zhang, Longfu Zhu, Mao-Jun Wang · 2024 · Nature Communications
  52. PIRCh-seq: functional classification of non-coding RNAs associated with distinct histone modifications
    Jingwen Fang, Qing Ma, Ci Chu, Beibei Huang, Lingjie Li, Pengfei Cai, Pedro J. Batista, Karen Tolentino, Jin Xu, Rui Li et al. · 2019 · Genome biology
  53. Three-dimensional chromatin organization in cardiac development and disease
    Alessandro Bertero, Manuel Rosa‐Garrido · 2020 · Journal of Molecular and Cellular Cardiology
  54. Studying transcription factor function in the genome at molecular resolution
    Arnaud Regis Krebs · 2021 · Trends in Genetics
  55. Environmental Enrichment Induces Epigenomic and Genome Organization Changes Relevant for Cognition
    S. Espeso-Gil, A. Holik, Sarah Bonnin, S. Jhanwar, Sandhya Chandrasekaran, R. Pique-Regi, Júlia Albaigès-Ràfols, Michael Maher, Jon Permanyer, M. Irimia et al. · 2021 · Frontiers in Molecular Neuroscience
  56. CTCF and Its Partners: Shaper of 3D Genome during Development
    Xiaoyue Sun, Jing Zhang, Chunwei Cao · 2022 · Genes
  57. Cross-regulome profiling of RNA polymerases highlights the regulatory role of polymerase III on mRNA transcription by maintaining local chromatin architecture
    Yongpeng Jiang, Jie Sheng Huang, Kai Tian, Xiao Yi, Haonan Zheng, Yi Zhu, Tiannan Guo, Xiong Ji · 2022 · Genome biology
  58. Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations
    Ryne C. Ramaker, Andrew A. Hardigan, Say-Tar Goh, E. Christopher Partridge, Barbara J. Wold, Sara J. Cooper, R Myers · 2020 · Genome Research
  59. Major nuclear locales define nuclear genome organization and function beyond A and B compartments
    Omid Gholamalamdari, Tom van Schaik, Yuchuan Wang, Pradeep Kumar, Liguo Zhang, Yang Zhang, Gabriela Andrea Hernandez Gonzalez, Athanasios E Vouzas, Peiyao A Zhao, David M. Gilbert et al. · 2024 · eLife
  60. Cell type–specific 3D-genome organization and transcription regulation in the brain
    Shiwei Liu, Cosmos Yuqi Wang, Pu Zheng, Bojing Blair Jia, Nathan R. Zemke, Peter Ren, Hannah L. Park, Bing Ren, Xiaowei Zhuang · 2025 · Science Advances
  61. Dynamics of microcompartment formation at the mitosis-to-G1 transition
    Viraat Y. Goel, Nicholas G. Aboreden, James M. Jusuf, Hao-Yue Zhang, Luisa P. Mori, L. Mirny, Gerd A. Blobel, E. Banigan, A. Hansen · 2025 · Nature Structural & Molecular Biology
  62. Pioneer Factors in Animals and Plants—Colonizing Chromatin for Gene Regulation
    Xuelei Lai, Leonie Verhage, Véronique Hugouvieux, Chloé Zubieta · 2018 · Molecules
  63. High-Resolution Mapping of Multiway Enhancer-Promoter Interactions Regulating Pathogen Detection
    Pranitha Vangala, Rachel Murphy, Sofia A. Quinodoz, Kyle J. Gellatly, Patrick E. McDonel, Mitchell Guttman, Manuel G. Garber · 2020 · Molecular Cell
  64. Non-coding RNAs in chromatin folding and nuclear organization
    Sergey V. Razin, Alexey A. Gavrilov · 2021 · Cellular and Molecular Life Sciences
  65. Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions
    Charles Limouse, Owen K. Smith, David Jukam, Kelsey A. Fryer, William James Greenleaf, Aaron F. Straight · 2023 · Nature Communications
  66. Spatial promoter–enhancer hubs in cancer: organization, regulation, and function
    Zhao, Jingru, Faryabi, Robert B. · 2023 · Trends in Cancer
  67. A guide to visualizing the spatial epigenome with super‐resolution microscopy
    Jianquan Xu, Yang Liu · 2019 · FEBS Journal
  68. Tidying-up the plant nuclear space: domains, functions, and dynamics
    Ana Paula Santos, Valérie Gaudin, Iva Mozgová, Frédéric Pontvianne, Daniel S. P. Schubert, Ahmet L. Tek, Martina Dvořáčková, Chang Liu, Paul F. Fransz, Stefanie Rosa et al. · 2020 · Journal of Experimental Botany
  69. The dynamics of three-dimensional chromatin organization and phase separation in cell fate transitions and diseases
    Xiaoru Ling, Xinyi Liu, Shaoshuai Jiang, Lili Fan, Junjun Ding · 2022 · Cell Regeneration
  70. Structure and dynamics of nuclear A/B compartments and subcompartments
    Asami Oji, Linda Choubani, Hisashi Miura, Ichiro Hiratani · 2024 · Current Opinion in Cell Biology
  71. Ribosomal RNA genes shape chromatin domains associating with the nucleolus
    Ariadna Picart-Picolo, Nathalie Picault, Frédéric Pontvianne · 2019 · Nucleus
  72. MATCHA: Probing Multi-way Chromatin Interaction with Hypergraph Representation Learning
    Ruochi Zhang, Jian Ma · 2020 · Cell Systems
  73. Super-Resolution Localisation of Nuclear PI(4)P and Identification of Its Interacting Proteome
    Veronika Fáberová, Ilona Kalasová, Alžběta Krausová, Pavel Hozák · 2020 · Cells
  74. Current Understanding of Molecular Phase Separation in Chromosomes
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  75. The nucleolus is the site for inflammatory RNA decay during infection
    Taeyun A. Lee, Heonjong Han, Ahsan Habib Polash, Seok Keun Cho, Ji Eun Lee, Eun A. Ra, Eunhye Lee, Areum Park, Su‐Jin Kang, Junhee L. Choi et al. · 2022 · Nature Communications
  76. Biomolecular condensates: insights into early and late steps of the HIV-1 replication cycle
    Francesca Di Nunzio, Vladimir Nikolaevich Uversky, Andrew J. Mouland · 2023 · Retrovirology
  77. Evaluating the role of the nuclear microenvironment in gene function by population-based modeling
    Aslı Yıldırım, Nan Hua, Lorenzo Boninsegna, Yuxiang Zhan, Guido Polles, Ke Qin Gong, Shengli Hao, Wenyuan Li, Xianghong Jasmine Zhou, Frank Alber · 2023 · Nature Structural & Molecular Biology
  78. Blank spots on the map: some current questions on nuclear organization and genome architecture
    Carmen Adriaens, Leonid Serebryannyy, Marina Feric, Andria Schibler, Karen J. Meaburn, Nard Kubben, Paweł Trzaskoma, Sigal Shachar, Sandra Vidak, Elizabeth H. Finn et al. · 2018 · Histochemistry and Cell Biology
  79. Using GARDEN-NET and ChAseR to explore human haematopoietic 3D chromatin interaction networks
    Miguel Madrid-Mencía, Emanuele Raineri, T. B. Ngoc Cao, Véra Pancaldi · 2020 · Nucleic Acids Research
  80. Three-dimensional genome organization via triplex-forming RNAs
    Irene Farabella, Marco Di Stefano, Paula Soler-Vila, María Marti-Marimon, Marc A. Martı́-Renom · 2021 · Nature Structural & Molecular Biology
  81. Reconstruct high-resolution 3D genome structures for diverse cell-types using FLAMINGO
    Hao Wang, Jiaxin Yang, Yu Zhang, Jianliang Qian, Jianrong Wang · 2022 · Nature Communications
  82. Transcriptional enhancers at 40: evolution of a viral DNA element to nuclear architectural structures
    Sreejith J. Nair, Tom Suter, Susan Siyu Wang, Yang Lu, Feng Yang, Michael G. Rosenfeld · 2022 · Trends in Genetics
  83. Chromatin and Cancer: Implications of Disrupted Chromatin Organization in Tumorigenesis and Its Diversification
    Poonam Sehgal, Pankaj Chaturvedi · 2023 · Cancers
  84. ChIATAC is an efficient strategy for multi-omics mapping of 3D epigenomes from low-cell inputs
    Hao-Xi Chai, Harianto Tjong, Peng Li, W. Liao, Ping Wang, Chee-Hong Wong, C. Ngan, W. Leonard, Chia-Lin Wei, Y. Ruan · 2023 · Nature Communications
  85. Nuclear speckleopathies: developmental disorders caused by variants in genes encoding nuclear speckle proteins
    Kelly Regan, Kosuke Izumi · 2023 · Human Genetics
  86. Phase-separated CCER1 coordinates the histone-to-protamine transition and male fertility
    Dongdong Qin, Yayun Gu, Yu Zhang, Shu Wang, Tao Jiang, Yao Wang, Cheng Wang, Chang Chen, Tao Zhang, Weiya Xu et al. · 2023 · Nature Communications
  87. Advances in the multimodal analysis of the 3D chromatin structure and gene regulation
    Man-Hyuk Han, Jihyun Park, Minhee Park · 2024 · Experimental & Molecular Medicine
  88. Finding Friends in the Crowd: Three-Dimensional Cliques of Topological Genomic Domains
    Philippe Collas, Tharvesh M. Liyakat Ali, Annaël Brunet, Thomas Germier · 2019 · Frontiers in Genetics
  89. Advances in technologies for 3D genomics research
    Yan Zhang, Guoliang Li · 2020 · Science China Life Sciences
  90. Localization of RNAs in the nucleus: cis - and trans - regulation
    Chong Tong, Yafei Yin · 2021 · RNA Biology
  91. Uncovering the statistical physics of 3D chromosomal organization using data-driven modeling
    Vinícius G. Contessoto, Ryan R. Cheng, José N. Onuchic · 2022 · Current Opinion in Structural Biology
  92. From Effective Interactions Extracted Using Hi-C Data to Chromosome Structures in Conventional and Inverted Nuclei
    Sucheol Shin, Guang Shi, Dave Thirumalai · 2023 · PRX Life
  93. Measuring significant changes in chromatin conformation with ACCOST
    Kate B. Cook, Borislav Hrisimirov Hristov, Karine G. Le Roch, Jean‐Philippe Vert, William Stafford Noble · 2020 · Nucleic Acids Research
  94. Divide and Rule: Phase Separation in Eukaryotic Genome Functioning
    Sergey V. Razin, Sergey V. Ulianov · 2020 · Cells
  95. Three-dimensional nuclear organization in Arabidopsis thaliana
    Frédéric Pontvianne, Stefan Grob · 2020 · Journal of Plant Research
  96. The nucleolus-like and precursor bodies of mammalian oocytes and embryos and their possible role in post-fertilization centromere remodelling
    J. Fulka, Jana Rychtářová, Pasqualino Loi · 2020 · Biochemical Society Transactions
  97. Spatial modeling of biological patterns shows multiscale organization of Arabidopsis thaliana heterochromatin
    Javier Arpòn, Kaori Sakai, Valérie Gaudin, Philippe Andrey · 2021 · Scientific Reports
  98. The dynamics of chromatin architecture in brain development and function
    Izabela Harabula, Ana Pombo · 2021 · Current Opinion in Genetics & Development
  99. Noncoding RNAs: biology and applications—a Keystone Symposia report
    Jennifer Cable, Édith Heard, Tetsuro Hirose, Kannanganattu V. Prasanth, Ling‐Ling Chen, Jonathan E. Henninger, Sofia A. Quinodoz, David L. Spector, Sarah D. Diermeier, Allison M. Porman et al. · 2021 · Annals of the New York Academy of Sciences
  100. Extracting multi-way chromatin contacts from Hi-C data
    Lei Liu, Bokai Zhang, Changbong Hyeon · 2021 · PLoS Computational Biology