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Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans
Open accessAbstract
Development of microbiota-directed foods (MDFs) that selectively increase the abundance of beneficial human gut microbes, and their expressed functions, requires knowledge of both the bioactive components of MDFs and the mechanisms underlying microbe-microbe interactions. Here, gnotobiotic mice were colonized with a defined consortium of human-gut-derived bacterial strains and fed different combinations of 34 food-grade fibers added to a representative low-fiber diet consumed in the United States. Bioactive carbohydrates in fiber preparations targeting particular Bacteroides species were identified using community-wide quantitative proteomic analyses of bacterial gene expression coupled with forward genetic screens. Deliberate manipulation of community membership combined with administration of retrievable artificial food particles, consisting of paramagnetic microscopic beads coated with dietary polysaccharides, disclosed the contributions of targeted species to fiber degradation. Our approach, including the use of bead-based biosensors, defines nutrient-harvesting strategies that underlie, as well as alleviate, competition between Bacteroides and control the selectivity of MDF components.
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“This is demonstrated in recent work showing that dietary addition of a single type of fiber can cause dramatic changes in the expression of genes required for bacterial metabolism of fiber glycans16.”
From Gut microbiota and cardiovascular disease. (2020) · cites this paper as [16]
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Metadata
- Authors
- Patnode, M. L., Beller, Z. W., Han, N. D., Cheng, J., Peters, S. L., Terrapon, N., Henrissat, B., Le Gall, S., Saulnier, L., Hayashi, D. K., Meynier, A., Vinoy, S., Giannone, R. J., Hettich, R. L., & Gordon, J. I.
- Affiliations
- Washington University in St. Louis (US)
- Oak Ridge National Laboratory (US)
- Centre National de la Recherche Scientifique (FR)
- Biopolymères Interactions Assemblages (FR)
- Mondelēz International (United States) (US)
- Corresponding author
- Gordon, Jeffrey I.
- ORCID
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2019-09
- Volume
- 179
- Issue
- 1
- Pages
- 59-73.e13
- ISSN
- 0092-8674 (ISSN-L)
- PMC
- PMC6760872
- OpenAlex
- W2974099250
- Cited by
- 329
- References
- 49
- Citations by year
- 2026: 30 · 2025: 45 · 2024: 48 · 2023: 46 · 2022: 71 · 2021: 46 · 2020: 34 · 2019: 6
- FWCI
- 13.08
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- HAL (submittedVersion, other-oa)
- OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
- Funders
- National Institutes of Health
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Nursing › Nutrition and Dietetics › Microbial Metabolites in Food Biotechnology
- Health Sciences › Nursing › Nutrition and Dietetics › Food composition and properties
- Keywords
- human gut microbiome, interspecific competition, dietary fiber, Bacteroides, bioactive carbohydrates, microbial gene expression, gnotobiotic mice, polysaccharide degradation, forward genetic screen
- MeSH terms
- Gastrointestinal Microbiome, Animals, Bacteroides, Diet, Dietary Fiber, Feces, Germ-Free Life, Humans, Male, Mice, Inbred C57BL, Polysaccharides, Gene Expression Regulation, Bacterial, Proteomics, Mice, Microbial Interactions
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