Deep Learning Reveals Cancer Metastasis and Therapeutic Antibody Targeting in the Entire Body

Pan, Chenchen, Schoppe, Oliver, Parra-Damas, Arnaldo, Cai, Ruiyao, Todorov, Mihail Ivilinov, Gondi, Gabor, von Neubeck, Bettina, Böğürcü-Seidel, Nuray +19 more·2019·Cell

DOI 10.1016/j.cell.2019.11.013

Cited by (206)

Items 101–200 of 206

Deep learning reveals 3D atherosclerotic plaque distribution and composition
Vanessa Isabell Jurtz, Grethe Skovbjerg, Casper Gravesen Salinas, Urmas Roostalu, Louise Pedersen, Jacob Hecksher‐Sørensen, Bidda Rolin, Michael Nyberg, Martijn van de Bunt, Camilla Ingvorsen · 2020 · Scientific Reports
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Julián Taranda, Şevin Turcan · 2021 · Cancers
Tissue clearing and 3D imaging – putting immune cells into context
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Tumor Metastasis: Mechanistic Insights and Therapeutic Intervention
Lin Tang, Shao‐Cong Peng, Xiao‐Wan Zhuang, Yan He, Yuxiang Song, Hao Nie, Can‐Can Zheng, Zhenyu Pan, Alfred King-yin Lam, Ming‐Liang He et al. · 2025 · MedComm – Oncology
METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy
Izabela Horvath, Johannes Christian Paetzold, Oliver Schoppe, Rami Al-Maskari, Ivan Ezhov, Suprosanna Shit, Hongwei Li, Ali Ertürk, Bjoern H. Menze · 2022 · IEEE Winter Conference on Applications of Computer Vision
One deep learning local-global model based on CT imaging to differentiate between nodular cryptococcosis and lung cancer which are hard to be diagnosed
Sheng Li, Guizhi Zhang, Youbing Yin, Qiuxia Xie, Xinyu Guo, Kunlin Cao, Qi Song, Jian Guan, Chao Zhou · 2021 · Computerized Medical Imaging and Graphics
An Intelligent Solution for Automatic Garment Measurement Using Image Recognition Technologies
Agnė Paulauskaitė-Tarasevičienė, Eimantas Noreika, Ramunas Purtokas, Ingrida Lagzdinytė-Budnikė, V. Daniulaitis, Ruta Salickaite-Zukauskiene · 2022 · Applied Sciences
Use of a tissue clearing technique combined with retrograde trans-synaptic viral tracing to evaluate changes in mouse retinorecipient brain regions following optic nerve crush
Zong-Yi Zhan, Yiru Huang, Lu Zhao, Yadan Quan, Zi-Jing Li, Difang Sun, Ya-Li Wu, Haoyang Wu, Zi-Tian Liu, Kai-Li Wu et al. · 2022 · Neural Regeneration Research
A Review of Complex Systems Approaches to Cancer Networks
Abicumaran Uthamacumaran · 2020 · Complex Systems
Multidimensional Imaging of Breast Cancer
Anne C. Rios, Jacco van Rheenen, Colinda L. G. J. Scheele · 2022 · Cold Spring Harbor Perspectives in Medicine
Volume imaging to interrogate cancer cell-tumor microenvironment interactions in space and time
Jorge Almagro, Hendrik A. Messal · 2023 · Frontiers in Immunology
The pre-metastatic niche: mechanisms, heterogeneity, and therapeutic opportunities
Xu-Ran Zhang, Bing Wei, Bing-Hua Jiang, Weihong Ren · 2026 · Molecular Cancer
In Synergy: Optimizing CAR T Development and Personalizing Patient Care Using Single-Cell Technologies
Oren Barboy, Yonatan Katzenelenbogen, Rotem Shalita, Ido Amit · 2023 · Cancer Discovery
Innovative optical imaging strategies for monitoring immunotherapy in the tumor microenvironments
Um‐e‐Kalsoom, Shiqi Wang, Junle Qu, Liwei Liu · 2024 · Cancer Medicine
Cancer as a tool for preclinical psychoneuroimmunology
Jeremy C. Borniger · 2021 · Brain Behavior & Immunity - Health
COMBINe enables automated detection and classification of neurons and astrocytes in tissue-cleared mouse brains
Yuheng Cai, Xuying Zhang, Chen Li, H. Troy Ghashghaei, Alon Greenbaum · 2023 · Cell Reports Methods
Beyond 2D: A scalable and highly sensitive method for a comprehensive 3D analysis of kidney biopsy tissue
Hiroyuki Yamada, Shin-ichi Makino, Issei Okunaga, Takafumi Miyake, Kanae Nonaka, Juan Alejandro Oliva Trejo, Takahiro Tominaga, Maulana Antiyan Empitu, Ika Nindya Kadariswantiningsih, Aurélien Kerever et al. · 2023 · PNAS Nexus
Applications of Lightsheet Fluorescence Microscopy by High Numerical Aperture Detection Lens
Chun-Pei Shih, Wei‐Chun Tang, Peilin Chen, Bi‐Chang Chen · 2024 · The Journal of Physical Chemistry B
Anatomical considerations for inhaled aerosol deposition modeling: Methods, applications, challenges and opportunities
Robert F. Phalen, Mark D. Hoover, Michael J. Oldham, Otmar Schmid, Laleh Golshahi · 2021 · Journal of Aerosol Science
TIAM1 Upregulation Confers NVP-BEZ235 Resistance to Breast Cancer Cells Through FGFR/STAT3 Pathway
Jingjing Qiao, Man Li, Na Li, Lingzhi Xu, Gena Huang, Jing Yu · 2020 · Biochemical Genetics
Deep learning for preoperative prediction of the EGFR mutation and subtypes based on the MRI image of spinal metastasis from primary NSCLC
Tao Jiang, Xinyan Sun, Yue Dong, Wei Guo, Hongbo Wang, Zhibin Yue, Yahong Luo, Xiran Jiang · 2022 · Biomedical Signal Processing and Control
Dive into Single, Seek Out Multiple: Probing Cancer Metastases via Single-Cell Sequencing and Imaging Techniques
Shang Su, Xiaohong Li · 2021 · Cancers
Which factors matter the most? Revisiting and dissecting antibody therapeutic doses
Yu Tang, Xiaobing Li, Yanguang Cao · 2021 · Drug Discovery Today
Three-dimensional Imaging Reveals Immune-driven Tumor-associated High Endothelial Venules as a Key Correlate of Tumor Rejection Following Depletion of Regulatory T Cells
Stefan Milutinovic, Jun Abe, Emma Jones, Inken D. Kelch, Kathryn Smart, Sarah N. Lauder, Michelle S. Somerville, Carl F. Ware, Andrew J Godkin, Jens Volker Stein et al. · 2022 · Cancer Research Communications
Improved automated tumor segmentation in whole-body 3D scans using multi-directional 2D projection-based priors
Sambit Tarai, Elin Lundström, Therese Sjöholm, Hanna Jönsson, Alexander Korenyushkin, Nouman Ahmad, Mette Abildgaard Pedersen, Daniel L. Molin, Gunilla Enblad, Robin Strand et al. · 2024 · Heliyon
Brain tumor classification of virtual NMR voxels based on realistic blood vessel‐induced spin dephasing using support vector machines
Artur Hahn, Julia Bode, Sarah Schuhegger, Thomas Krüwel, Volker Jörg Friedrich Sturm, Ke Zhang, Johann M. E. Jende, Björn Tews, Sabine Heiland, Martin Bendszus et al. · 2020 · NMR in Biomedicine
blob loss: instance imbalance aware loss functions for semantic segmentation
Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Li, Harsharan S. Bhatia, Timo Loehr, Marie Piraud et al. · 2022 · Zurich Open Repository and Archive (University of Zurich)
Tissue Clearing and Its Application in Nanoparticle Development
Zhouyi Rong, Ali Ertürk, Yamei Tang, Hongcheng Mai · 2025 · Small
Artificial intelligence-driven whole-brain cell mapping with highly multiplexed in situ hybridization
Tatsuya C. Murakami, Meng Xia, Yurie Maeda, Yuejia Yin, Paolo Emilio Barbano, Ziyi Lin, Tomoyuki Mano, Kazuki Tainaka, Sam Reiter, Nathaniel Heintz · 2026 · Neuron
Machine learning algorithm integrates bulk and single-cell transcriptome sequencing to reveal immune-related personalized therapy prediction features for pancreatic cancer
Longjun Zang, Baoming Zhang, Yanling Zhou, Fusheng Zhang, Xiaodong Tian, Zhongming Tian, Dongjie Chen, Qingwang Miao · 2023 · Aging
The integration of artificial intelligence models to augment imaging modalities in pancreatic cancer
Xianze Wang, Wen Yuan Chung, Elon Santos Correa, Yi Zhu, Eyad Issa, Ashley Robert Dennison · 2020 · Journal of Pancreatology
Proteomics of spatially identified tissues in whole organs
Harsharan S. Bhatia, Andreas‐David Brunner, Zhouyi Rong, Hongcheng Mai, Marvin Thielert, Rami Al-Maskari, Johannes Christian Paetzold, Florian Kofler, Mihail Ivilinov Todorov, Mayar Ali et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
A deep-learning framework reveals whole-body perturbations at cell level
Kaltenecker, Doris, Horvath, Izabela, Al-Maskari, Rami, Chen, Ying, Kolabas, Zeynep Ilgin, Hoeher, Luciano, Todorov, Mihail, Minde, David-Paul, Kapoor, Saketh, Turhan, Sena Gül et al. · 2026 · Nature
Decoding tissue complexity: multiscale mapping of chemistry–structure–function relationships through advanced visualization technologies
Zhiyuan Zhao, Haijun Cui, Haitao Cui · 2025 · Journal of Materials Chemistry B
A three dimensional immunolabeling method with peroxidase-fused nanobodies and fluorochromized tyramide-glucose oxidase signal amplification
Kenta Yamauchi, Masato Koike, Hiroyuki Hioki · 2025 · Communications Biology
Tissue clearing to examine glioma complexity in 3 dimensions
Xinyi Yang, Zhaoyu Ye, Minglin Zhang, Ye Ouyang, Dian He, Xinyue Wang, H. M. Lai, Haitao Sun · 2023 · Journal of Neuropathology & Experimental Neurology
Whole-body tumor segmentation from FDG-PET/CT: Leveraging a segmentation prior from tissue-wise projections
Sambit Tarai, Elin Lundström, Nouman Ahmad, Robin Strand, Håkan K. Ahlström, Joel Kullberg · 2024 · Heliyon
End-to-End Deep Learning for Detecting Metastatic Breast Cancer in Axillary Lymph Node from Digital Pathology Images
Turki Turki, Anmar Al-Sharif, Y‐h. Taguchi · 2021 · Lecture notes in computer science
A novel cervix carcinoma biomarker: Pathological-epigenomics, integrated analysis of MethylMix algorithm and pathology for predicting response to cancer immunotherapy
Yu-Chong Yu, Tian-Ming Shi, Shenglan Gu, Yuhong Li, Xiaoming Yang, Qiong Fan, Yudong Wang · 2022 · Frontiers in Oncology
Realization of cellomics to dive into the whole-body or whole-organ cell cloud
Tomoki T. Mitani, Etsuo A. Susaki, Katsuhiko Matsumoto, Hiroki R. Ueda · 2024 · Nature Methods
Mesoscopic Optical Imaging of the Pancreas—Revisiting Pancreatic Anatomy and Pathophysiology
Tomas Alanentalo, Max Hahn, Stefanie M. A. Willekens, Ulf Ahlgren · 2021 · Frontiers in Endocrinology
Tissue optical clearing methods for microscopy: A review of their application in neuroscience
Dominik Hamer, Daniela Petrinec, Monika Berecki, Anton Glasnović, Srečko Gajović · 2023 · Periodicum Biologorum
Imaging pheochromocytoma in small animals: preclinical models to improve diagnosis and treatment
Hermine Mohr, Alessia Foscarini, Katja Steiger, Simone Ballke, Christoph Rischpler, Franz Schilling, Natalia S. Pellegata · 2021 · EJNMMI Research
Intracerebral Distribution of CAG Repeat-Binding Small Molecule Visualized by Whole-Brain Imaging
Eitaro Murakami, Masayuki Nakamori, Kazuhiko Nakatani, T. Shibata, Kazuki Tainaka · 2023 · Bioconjugate Chemistry
The Significance of Tumor Microenvironment Score for Breast Cancer Patients
Yuan Tian, Jingnan Wang, Qing Wen, Aiqin Gao, Alan Huang, Ran Li, Ye Zhang, Guohai Su, Yuping Sun · 2022 · BioMed Research International
Characterizing and targeting glioblastoma neuron-tumor networks with retrograde tracing
Svenja Kristin Tetzlaff, Ekin Reyhan, C. Peter Bengtson, Julian Schroers, Julia Wagner, Marc Cicero Schubert, Nikolas Layer, Maria C. Puschhof, Anton J Faymonville, Nina Drewa et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Tissue Optical Clearing for Biomedical Imaging: From In Vitro to In Vivo
Tingting Yu, Dongyu Li, Dan Yan Zhu · 2021 · Advances in experimental medicine and biology
Application of deep learning methods: From molecular modelling to patient classification
Xiao Fu, Paul A. Bates · 2022 · Experimental Cell Research
Deep learning in molecular biology marker recognition of patients with acute myeloid leukemia
Lieguang Chen, Ying Lu, Renzhi Pei, Pisheng Zhang, Xuhui Liu, Xiaohong Du, Dong Chen, Junjie Cao, Shuangyue Li, Xianxu Zhuang · 2021 · The Journal of Supercomputing
Quantitative 3D Imaging of Trypanosoma cruzi-Infected Cells, Dormant Amastigotes, and T Cells in Intact Clarified Organs
Fernando J. Sánchez-Valdéz, Angel Marcelo Padilla, Juan Manuel Bustamante, Caleb W. D. Hawkins, Rick L. Tarleton · 2022 · Journal of Visualized Experiments
Tissue clearing method in visualization of cancer progression and metastasis
Kei Takahashi, Kohei Miyazono · 2024 · Upsala Journal of Medical Sciences
Unsupervised learning enables multicolor synchronous fluorescence microscopy without cytoarchitecture crosstalk
Bolin Lu, Zhangheng Ding, Kefu Ning, Xiaoyu Zhang, Xiangning Li, Jiangjiang Zhao, Ruiheng Xie, Dan Shen, Jiahong Hu, Tao Jiang et al. · 2024 · APL Photonics
General quasi-equilibrium multivalent binding model to study diverse and complex drug-receptor interactions of biologics
Chee M. Ng, Robert J. Bauer · 2024 · Journal of Pharmacokinetics and Pharmacodynamics
Comparative Study Of Voxel-Based Statistical Analysis Methods For Fluorescently Labelled And Light Sheet Imaged Whole-Brain Samples
Johanna Perens, Jacob Lercke Skytte, Casper Gravesen Salinas, Jacob Hecksher‐Sørensen, Tim B. Dyrby, Anders Bjorholm Dahl · 2021 · IEEE International Symposium on Biomedical Imaging (ISBI)
New techniques for studying neurodevelopment
Augusto Escalante, Rocio González-Martínez, Eloı́sa Herrera · 2020 · Faculty Reviews
Sensitive Spatiotemporal Tracking of Spontaneous Metastasis in Deep Tissues via a Genetically-Encoded Magnetic Resonance Imaging Reporter
Nivin N. Nyström, Sean W. McRae, Francisco F.M. Martinez, John Joseph Kelly, Timothy J. Scholl, John Andrew Ronald · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
Single-cell precision nanotechnology in vivo
Müge Molbay, Benjamin Kick, Shan Zhao, Mihail Ivilinov Todorov, Tzu‐Lun Ohn, Stefan Roth, Alba Simats, Vikramjeet Singh, Igor Khalin, Chenchen Pan et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
Label-free metabolic fingerprinting of motile mammalian spermatozoa with subcellular resolution
Fitore Kusari, Lenka Backová, Dalibor Pánek, Aleš Benda, Zdeněk Trachtulec · 2025 · BMC Biology
Three‐Dimensional Visualisation of Blood Vessels in Human Gliomas Using Tissue Clearing and Deep Learning
Xiaodu Yang, Xinyue Wang, Dian He, Feiyang Luo, Chenyang Li, Yunhao Luo, Ting Li, Zhaoyu Ye, Chun Ye, Minglin Zhang et al. · 2025 · Neuropathology and Applied Neurobiology
Cell reprogramming in cancer: Interplay of genetic, epigenetic mechanisms, and the tumor microenvironment in carcinogenesis and metastasis
Santosh Shenoy · 2025 · World Journal of Clinical Oncology
Multimodality mapping of immunotherapy distribution as a predictive marker in glioma
Jonas G. Scheck, Berin Boztepe, Julius M. Kernbach, Kianush Karimian Jazi, Lennart Heinz, Katharina Schregel, Volker Jörg Friedrich Sturm, Marianne Schell, Jovana Bojcevski, Manuel Fischer et al. · 2025 · Neuro-Oncology
Data-Driven Healing: Integrating Machine Learning with Traditional Chinese Medicinal Plants
Elshan Musazade, Isack Ibrahim Mrisho, Xianzhong Feng · 2026 · CABI biotechnology series.
Nanoparticles reach metastatic tumours via enhanced permeability of adjacent vessels
Qin Wang, Cici Zeng, Ziqi Chen, LH Hu, Jiaxiang Dou, Chengkun Ye, Lianbang Zhu, Qirui Liang, Huimin Pan, Wei Jiang et al. · 2026 · Nature Nanotechnology
Instant multicolor super-resolution microscopy with deep convolutional neural network
Songyue Wang, Chang Fu Qiao, Amin Jiang, Di Li, Dong Li · 2021 · Biophysics Reports
A practical spatial analysis method for elucidating the biological mechanisms of cancers with abdominal dissemination in vivo
Yukihide Ota, Shinya Sato, Mitsuyo Yoshihara, Yoshiyasu Nakamura, Etsuko Miyagi, Yohei Miyagi · 2022 · Scientific Reports
Revolutionizing the Life Sciences by Developing a Holographic Digital Mannequin
Bin Cong, Xin‐an Liu, Shiming Zhang, Zhiyu Ni, Liping Wang · 2023 · Engineering
Tissue optical clearing and expanding solution for improved nuclear segmentation
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Spiner, deep learning-based automated detection of spiral ganglion neurons in intact cochleae
Yuheng Cai, Greta Leitz-Najarian, Reuben Rosen, Kendall A. Hutson, Adele Moatti, Chen Li, Douglas C. Fitzpatrick, Alon Greenbaum · 2025 · iScience
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The Expanding Landscape of Neural Architectures and Their Impact in Biomedicine
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Smarter Radiologists: A User-Friendly Algorithm Aiming to Improve the Accuracy and Readability of Intracranial Hemorrhage CT Detection
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The use of tissue clearing to study renal transport mechanisms and kidney remodelling
Turgay Saritas · 2023 · Current Opinion in Nephrology & Hypertension
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Asif Adil, Mohammed Asger, Musharaf Gul, Akib Mohi Ud Din Khanday, Rayees Ahmad Magray · 2024 · Elsevier eBooks
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Kunpeng Wang, Chunxiao Chen, Yueyue Xiao, Ruoyu Meng, Liang Wang · 2025 · Biomedizinische Technik/Biomedical Engineering
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Michelle Hough, Michael Fenlon, Alison Glazier, Celia A. Short, Gerardo Esteban Fernandez, Jiabo Xu, Elaa M. Mahdi, Kinji Asahina, Kasper S. Wang · 2021 · BioTechniques
Applications of Machine Learning in Study of Cell Biology
Shyamasree Ghosh, Rathi Dasgupta · 2022 · Springer eBooks
COMBINe: Automated Detection and Classification of Neurons and Astrocytes in Tissue Cleared Mouse Brains
Yuheng Cai, Xuying Zhang, Chen Li, H. Troy Ghashghaei, Alon Greenbaum · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
Multimodal imaging and deep learning unveil pulmonary delivery profiles and acinar migration of tissue-resident macrophages in the lung
Lin Yang, Pramod Kumar, Arunima Sengupta, Ali Farnoud, Ruolin Shen, Darya Trofimova, Sebastian Ziegler, Neda Davoudi, Ali Doryab, Ali Önder Yildirim et al. · 2023 · Research Square
Artificial Intelligence in Cancer Research
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Investigating human neocortical architecture in 3D
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Deep Learning for Preoperative Prediction of the Egfr Mutation and Subtypes Based on the MRI Image of Spinal Metastases from Primary Nsclc
Tao Jiang, Xinyan Sun, Yue Dong, Wei Guo, Hongbo Wang, Zhibin Yue, Yahong Luo, Xiran Jiang · 2022 · SSRN Electronic Journal
Faculty Opinions recommendation of Revisiting the role of Dcc in visual system development with a novel eye clearing method.
Eloı́sa Herrera, Augusto Escalante · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
Visualization Analysis of Publication Trends and Research Hotspots on the Tumor Microenvironment of Pancreatic Cancer Between 2010 and 2020: a Bibliometric Study
Kaiwen Wu, Ye Liu, Lei Liu, Yunlan Peng, Honglin Pang, Xiaobin Sun, Demeng Xia · 2021 · Research Square
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Alejandra Hernandez Pichardo, Francesco Amadeo, Bettina Wilm, Raphaël Lévy, Lorenzo Ressel, Patricia A. Murray, Violaine Sée · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
CIMT 2022: Report on the 19th Annual Meeting of the Association for Cancer Immunotherapy
Peer Andre Berger, Janina Freitag, Sophie-Christin Linkenbach, Lukas Merz, Maik Schork, Sophia Thevissen, Ikra Yildiz, Jan David Beck · 2022 · Human Vaccines & Immunotherapeutics
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Jocelyn Martinez, Nianchao Wang, Linghao Hu, Elizabeth Cardona Benitez, Uyen T. T. Nguyen, Ricardo Martínez, Alex J. Walsh · 2022 · Royal Society of Chemistry eBooks
Machine learning algorithm integrates bulk and single-cell transcriptome sequencing to reveal immune-related personalized therapy prediction features for pancreatic cancer
Longjun Zang, Baoming Zhang, Yanling Zhou, Fusheng Zhang, Xiaodong Tian, Zhongming Tian, Dongjie Chen, Qingwang Miao · 2023 · Research Square
Interactions in the Local Onco-Sphere: An Overview
Phei Er Saw, Erwei Song · 2023 · Springer eBooks
Spiner, Deep Learning-Based Automated Detection of Spiral Ganglion Neurons in Intact Cochleae
Yuheng Cai, Greta Leitz-Najarian, K.A. Hutson, Adele Moatti, Chen Li, Doug Fitzpatrick, Alon Greenbaum · 2024 · SSRN Electronic Journal
Advancing cancer research with transparent mouse models: illuminating insights for detection and therapy
Soumyajit Das, Mahalaqua Nazli Khatib, Godfrey T. Banda, Shilpa Gaidhane, Rakesh Kumar Sharma, Sarvesh Rustagi, Prakasini Satapathy, Ranjit Sah · 2024 · International Journal of Surgery Open
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Age and generation-based model of metastatic cancer: From micrometastases to macrometastases
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Artificial Intelligence as an Alternative Strategy for the Rapid TB Detection, Discrimination, and Drug‐Resistance Identification: A Systematic Review and Meta‐Analysis
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Three‐Dimensional Architecture of Ectopic Epithelium and Vasculature in Ovarian Endometriosis Revealed by Tissue‐Clearing Imaging
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