Cellular and Molecular Probing of Intact Human Organs

Cited by (292)

Items 101–200 of 292

1. Tissue clearing and its applications in human tissues: A review
   Hongcheng Mai, Dan Lu · 2024 · Open Research (University of Surrey)
2. Delivery and kinetics of immersion optical clearing agents in tissues: Optical imaging from ex vivo to in vivo
   Tingting Yu, Xiang Zhong, Dongyu Li, Jingtan Zhu, Valery Victorovich Tuchin, Dan Zhu · 2024 · Advanced Drug Delivery Reviews
3. Thyroid cancer under the scope of emerging technologies
   Maxime Tarabichi, Pieter Demetter, Ligia Craciun, Carine Maenhaut, Vincent Detours · 2021 · Molecular and Cellular Endocrinology
4. Molecular Imaging of Ovarian Follicles and Tumors With Near‐Infrared II Bioconjugates
   Wang, Yicong, Lu, Wenhan, Chen, Zi‐Han, Xiao, Yan, Wang, Yu, Gao, Wenhao, Wang, Zhiming, Song, Ruihu, Fang, Zhao, Hu, Wei et al. · 2025 · Advanced Materials
5. A practical guide to unbiased quantitative morphological analyses of the gills of rainbow trout (Oncorhynchus mykiss) in ecotoxicological studies
   Sonja Fiedler, Hannah Wünnemann, Isabel Hofmann, Natalie Theobalt, Annette Feuchtinger, Axel Karl Walch, Julia Schwaiger, Rüdiger Wanke, Andreas Blutke · 2020 · PLoS ONE
6. Galnt2 neurons in the ventromedial hypothalamus counterregulate hypoglycemia via a brain-liver neurocircuit
   Junjie Wang, Xinyuan Sun, Xiangfei Gong, Wenling Dai, Hao Hong, Li Jiang, Zhonglong Wang, Zhiyuan Tang, Xiaobo Wu, Peng Sun et al. · 2025 · Cell Metabolism
7. Fundamental Neurochemistry Review: Incorporating a greater diversity of cell types, including microglia, in brain organoid cultures improves clinical translation
   Tyler J. Wenzel, Jennifer Le, Jim He, Jane Alcorn, Darrell D. Mousseau · 2022 · Journal of Neurochemistry
8. Light sheet fluorescence microscopy of cleared human eyes
   Marie Darche, Ysé Borella, Anna Verschueren, Ivana Gantar, Stéphane Pagès, Laura Batti, Michel Pâques · 2023 · Communications Biology
9. Effect of captopril on post-infarction remodelling visualized by light sheet microscopy and echocardiography
   Urmas Roostalu, Louise Thisted, Jacob Lercke Skytte, Casper Gravesen Salinas, Philip Juhl Pedersen, Jacob Hecksher‐Sørensen, Bidda Charlotte Rolin, Henrik H. Hansen, James G. MacKrell, Robert M. Christie et al. · 2021 · Scientific Reports
10. Cellular maps of gastrointestinal organs: getting the most from tissue clearing
    Cambrian Y. Liu, D. Brent Polk · 2020 · American Journal of Physiology-Gastrointestinal and Liver Physiology
11. The Potential of OMICs Technologies for the Treatment of Immune-Mediated Inflammatory Diseases
    Charles Gwellem Anchang, Cong Xu, Maria Gabriella Raimondo, Raja Narayana Atreya, Andreas Maier, Georg Andreas Schett, Vasily Zaburdaev, Simon Rauber, Andreas Ramming · 2021 · International Journal of Molecular Sciences
12. Optical angiography for diabetes-induced pathological changes in microvascular structure and function: An overview
    Jingtan Zhu, Dongyu Li, Tingting Yu, Dan Yan Zhu · 2021 · Journal of Innovative Optical Health Sciences
13. Placenta-derived factors contribute to human iPSC-liver organoid growth
    Yoshiki Kuse, Shinya Matsumoto, Syusaku Tsuzuki, Erica Carolina, Takashi Okumura, Toshiharu Kasai, Soichiro Yamabe, Kiyoshi Yamaguchi, Yoichi Furukawa, Tomomi Tadokoro et al. · 2025 · Nature Communications
14. Common principles in the lateralization of auditory cortex structure and function for vocal communication in primates and rodents
    Philip Ruthig, Marc Schönwiesner · 2022 · European Journal of Neuroscience
15. 3D imaging of human organs with micrometer resolution - applied to the endocrine pancreas
    Max Hahn, Christoffer Nord, Maria Eriksson, Federico Morini, Tomas Alanentalo, Olle Korsgren, Ulf Ahlgren · 2021 · Communications Biology
16. VIVIT: Resolving trans-scale volumetric biological architectures via ionic glassy tissue
    Yixiao Gao, Fengyuan Xin, Tao Wang, Chengjun Shao, Ying Hu, Zhuoya Chen, Yiwei Wang, Fenghua Xie, Tianyu Li, Sijie Li et al. · 2025 · Cell
17. MarShie: a clearing protocol for 3D analysis of single cells throughout the bone marrow at subcellular resolution
    Till Fabian Mertens, Alina Liebheit, Johanna Ehl, Ralf Köhler, Asylkhan A. Rakhymzhan, Andrew Woehler, Lukas Katthän, G. Ebel, Wjatscheslaw Liublin, Ana Kasapi et al. · 2024 · Nature Communications
18. Multi-omics and 3D-imaging reveal bone heterogeneity and unique calvaria cells in neuroinflammation
    Zeynep Ilgin Kolabas, Louis Benedikt Kuemmerle, Robert Perneczky, Benjamín Förstera, Maren Büttner, Özüm Şehnaz Çalışkan, Mayar Ali, Zhouyi Rong, Hongcheng Mai, Selina Hummel et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
19. Diffusion tensor imaging‐based studies at the group‐level applied to animal models of neurodegenerative diseases
    Müller, Hans-Peter, Roselli, Francesco, Rasche, Volker, Kassubek, Jan · 2020 · Frontiers in Neuroscience
20. High-Throughput Strategy for Profiling Sequential Section With Multiplex Staining of Mouse Brain
    Siqi Chen, Zhixiang Liu, Anan Li, Hui Gong, Ben Long, Xiangning Li · 2021 · Frontiers in Neuroanatomy
21. Unlocking the potential of large-scale 3D imaging with tissue clearing techniques
    Etsuo A. Susaki · 2024 · Microscopy
22. Perspectives in systems nephrology
    Maja T. Lindenmeyer, Fadhl Alakwaa, Michael P. Rose, Matthias Kretzler · 2021 · Cell and Tissue Research
23. Dec-DISCO: decolorization DISCO clearing for seeing through the biological architectures of heme-rich organs
    Jingtan Zhu, Yilin Ma, Jianyi Xu, Yusha Li, Peng Wan, Yisong Qi, Tingting Yu, Dan Yan Zhu · 2021 · Biomedical Optics Express
24. Three-dimensional Imaging Coupled with Topological Quantification Uncovers Retinal Vascular Plexuses Undergoing Obliteration
    Chih‐Chiang Chang, Alison Chu, Scott Meyer, Michel M. Sun, Parinaz Abiri, Kyung In Baek, Varun Gudapati, Xili Ding, Pierre Guihard, Yichen Ding et al. · 2020 · Theranostics
25. The New Era of Three-Dimensional Histoarchitecture of the Human Endometrium
    Manako Yamaguchi, Kosuke Yoshihara, Nozomi Yachida, Kazuaki Suda, Ryo Tamura, Tatsuya Ishiguro, Takayuki Enomoto · 2021 · Journal of Personalized Medicine
26. Multiplexed and scalable cellular phenotyping toward the standardized three-dimensional human neuroanatomy
    Tatsuya C. Murakami, Nathaniel Heintz · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
27. 3D light-sheet fluorescence microscopy in preclinical and clinical drug discovery
    Urmas Roostalu, Henrik H. Hansen, Jacob Hecksher‐Sørensen · 2024 · Drug Discovery Today
28. Advances of novel hydrogels in the healing process of alveolar sockets
    Wenqing Yu, Liwei Hu, Yige Wei, Chengyu Xue, Yunfei Liu, Huixu Xie · 2025 · Biomaterials Advances
29. Organ-specific features of human kidney lymphatics are disrupted in chronic transplant rejection
    Daniyal J. Jafree, Benjamin J. Stewart, Karen L. Price, Maria Kolatsi‐Joannou, Camille Laroche, Barian Mohidin, Benjamin Michael Davis, Hannah J Mitchell, Lauren G. Russell, Lucía Marinas del Rey et al. · 2025 · Journal of Clinical Investigation
30. Connectome-based biophysics models of Alzheimer’s disease diagnosis and prognosis
    Justin Torok, Chaitali Anand, Parul Verma, Ashish Raj · 2022 · Translational research
31. Fluid preservation in brain banking: a review
    Andrew Thomas McKenzie, Oge Nnadi, Kat D Slagell, Emma L Thorn, Kurt W. Farrell, John F. Crary · 2024 · Free Neuropathology
32. 3D Whole-Brain Imaging Approaches to Study Brain Tumors
    Julián Taranda, Şevin Turcan · 2021 · Cancers
33. Tissue clearing and 3D imaging – putting immune cells into context
    Julian I. Hofmann, Selina Jessica Keppler · 2021 · Journal of Cell Science
34. SUMIC: A Simple Ultrafast Multicolor Immunolabelling and Clearing Approach for Whole-Organ and Large Tissue 3D Imaging
    Lincoln Biswas, Junyu Chen, Jessica E. De Angelis, Alexandros Chatzis, Jagdeep Nanchahal, Michael Loran Dustin, Saravana Kumar Ramasamy, Anjali P. Kusumbe · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
35. Tissue Optical Clearing: State of the Art and Prospects
    Elina Alekseevna Genina · 2022 · Diagnostics
36. Increased Multiplexity in Optical Tissue Clearing-Based Three-Dimensional Immunofluorescence Microscopy of the Tumor Microenvironment by Light-Emitting Diode Photobleaching
    Jingtian Zheng, Yi-Chien Wu, Evan H. Phillips, Xiaoying Cai, Xu Wang, Seung Young Lee · 2024 · Laboratory Investigation
37. Whole‐Tumor Clearing and Imaging of Intratumor Microbiota in Three Dimensions with miCDaL Strategy
    Yuezhou Wang, Zile Jiang, Kai Zhang, Huimin Tang, Guimei Wang, Jinshan Gao, Guanghui He, Baoyue Liang, Li Li, Chaoyong James Yang et al. · 2024 · Advanced Science
38. Unbiased analysis of obesity related, fat depot specific changes of adipocyte volumes and numbers using light sheet fluorescence microscopy
    Natalie Theobalt, Isabel Hofmann, Sonja Fiedler, Simone Renner, Georg Dhom, Annette Feuchtinger, Axel Karl Walch, Martin Hrabě de Angelis, Eckhard Wolf, Rüdiger Wanke et al. · 2021 · PLoS ONE
39. METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy
    Izabela Horvath, Johannes Christian Paetzold, Oliver Schoppe, Rami Al-Maskari, Ivan Ezhov, Suprosanna Shit, Hongwei Li, Ali Ertürk, Bjoern H. Menze · 2022 · IEEE Winter Conference on Applications of Computer Vision
40. Recent progress in optical clearing of eye tissues
    Wenhan Lu, Zhenle Pei, Wei Hu, Chen Tan, Xiaoyu Tong, Yi Feng, Xinghuai Sun · 2021 · Experimental Eye Research
41. Hierarchical Random Walker Segmentation for Large Volumetric Biomedical Images
    Dominik Drees, Florian Eilers, Xiaoyi Jiang · 2022 · IEEE Transactions on Image Processing
42. Maximizing content across scales: Moving multimodal microscopy and mesoscopy toward molecular imaging
    Sebastian Munck, Jim Swoger, Montserrat Coll‐Lladó, Nicola Gritti, Greetje Vande Velde · 2021 · Current Opinion in Chemical Biology
43. Multidimensional Imaging of Breast Cancer
    Anne C. Rios, Jacco van Rheenen, Colinda L. G. J. Scheele · 2022 · Cold Spring Harbor Perspectives in Medicine
44. Volume imaging to interrogate cancer cell-tumor microenvironment interactions in space and time
    Jorge Almagro, Hendrik A. Messal · 2023 · Frontiers in Immunology
45. Mapping cellular targets of covalent cancer drugs in the entire mammalian body
    Zhengyuan Pang, Verina H. Leung, Cailynn C. Wang, Ahmadreza Attarpour, Anthony Rinaldi, Hanbing Shen, María Dolores Moya-Garzón, Logan H. Sigua, Claire Rammel, Alexandra Selke et al. · 2025 · Cell
46. COMBINe enables automated detection and classification of neurons and astrocytes in tissue-cleared mouse brains
    Yuheng Cai, Xuying Zhang, Chen Li, H. Troy Ghashghaei, Alon Greenbaum · 2023 · Cell Reports Methods
47. Three-dimensional mapping in multi-samples with large-scale imaging and multiplexed post staining
    Siqi Chen, Guangcai Liu, Anan Li, Zhixiang Liu, Ben Long, Xiao‐Quan Yang, Hui Gong, Xiangning Li · 2023 · Communications Biology
48. Mapping the arterial vascular network in an intact human kidney using hierarchical phase-contrast tomography
    Shahrokh Rahmani, Daniyal J. Jafree, Peter David Lee, Paul Tafforeau, Joseph Brunet, Sonal Nandanwar, Yang Zhou, Joseph Jacob, Alexandre Bellier, Maximilian Ackermann et al. · 2025 · npj Imaging
49. Tissue Clearing Approaches in Atherosclerosis
    Ting Sun, Yuanfang Li, Benjamín Förstera, Karen Stanic, Shu Lu, Sabine Steffens, Changjun Yin, Ali Ertürk, Remco T. A. Megens, Christian Weber et al. · 2022 · Methods in molecular biology
50. Applications of tissue clearing in the spinal cord
    Ting Tian, Xiaoguang Li · 2020 · European Journal of Neuroscience
51. Brown adipose tissue secretes OLFM4 to coordinate sensory and sympathetic innervation via Schwann cells
    Mingqiang Lai, Wu Zhou, Wenchong Zou, Lianlian Qiu, Zhaoyu Liang, Wanyi Chen, Yiqing Wang, Bin Guo, Chaoran Zhao, Zhisheng Zhang et al. · 2025 · Nature Communications
52. The Human Organ Atlas
    Claire Walsh, Joseph Brunet, David Stansby, G. Gaisné, Yang Zhou, Maximilian Ackermann, Alexandre Bellier, Camille Berruyer, Axel Bocciarelli, Marjolaine Bodin et al. · 2026 · Science Advances
53. Testing the suitability of neuroanatomical tracing method in human fetuses with long years of postmortem delay
    Nail Can Öztürk, Turan Koç · 2022 · Surgical and Radiologic Anatomy
54. Self-assembly of three-dimensional liver organoids: virtual reconstruction via endocytosed polymer dots for refactoring the fine structure
    Ze Zhang, Yuyang Wu, Zhilu Xuan, Haotian Xu, Shengyan Yin, Zihui Meng · 2023 · Biomaterials Science
55. Revealing intact neuronal circuitry in centimeter-sized formalin-fixed paraffin-embedded brain
    Ya‐Hui Lin, Li-Wen Wang, Yen‐Hui Chen, Yi-Chieh Chan, Shang‐Hsiu Hu, Sheng‐Yan Wu, Chi‐Shiun Chiang, Guan‐Jie Huang, Shang‐Da Yang, Shi‐Wei Chu et al. · 2024 · eLife
56. Tissue clearing and its application in dental research
    Lingxi Meng, Xinyu Song, Junyi Wang, Wenxuan Shi, Liheng Gao, Xinquan Jiang, Wenjie Zhang · 2024 · BMEMat
57. Quantitative cytoarchitectural phenotyping of deparaffinized human brain tissues
    Danila Di Meo, Michele Sorelli, Josephine Ramazzotti, Franco Cheli, Samuel Bradley, Laura Perego, Beatrice Lorenzon, Giacomo Mazzamuto, Aron Emmi, Andrea Porzionato et al. · 2025 · Communications Biology
58. Chemical fluorescence-based dye staining for 3-dimensional histopathology analysis
    Hyun Jung Kim, Jeongah Kim, Jungyoon Choi, Woong Sun · 2022 · Animal Cells and Systems
59. A Cellular Ground Truth to Develop MRI Signatures in Glioma Models by Correlative Light Sheet Microscopy and Atlas-Based Coregistration
    Katharina Schregel, Lennart Heinz, Jessica Hunger, Chenchen Pan, Julia Bode, Manuel Fischer, Volker Jörg Friedrich Sturm, Varun Venkataramani, Kianush Karimian Jazi, Dennis Alexander Agardy et al. · 2023 · Journal of Neuroscience
60. Approaching Peak Ground Truth
    Florian Kofler, Johannes Wahle, Ivan Ezhov, Sophia J. Wagner, Rami Al-Maskari, Emilia Agnieszka Gryska, Mihail Ivilinov Todorov, Christina Bukas, Felix Meissen, Tingying Peng et al. · 2023 · IEEE International Symposium on Biomedical Imaging (ISBI)
61. The Human Lung Cell Atlas: a transformational resource for cells of the respiratory system
    Kerstin B. Meyer, Anna Wilbrey-Clark, Martijn C. Nawijn, Sarah Amalia Teichmann · 2021 · European Respiratory Society eBooks
62. blob loss: instance imbalance aware loss functions for semantic segmentation
    Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Li, Harsharan S. Bhatia, Timo Loehr, Marie Piraud et al. · 2022 · Zurich Open Repository and Archive (University of Zurich)
63. Decoding the Mouse Spinal Cord Locomotor Neural Network Using Tissue Clearing, Tissue Expansion and Tiling Light Sheet Microscopy Techniques
    Ruili Feng, Jiongfang Xie, Jing Lü, Huijie Hu, Yanlu Chen, Dongyue Wang, Liang Gao · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
64. Mapping the blood vasculature in an intact human kidney using hierarchical phase-contrast tomography
    Shahrokh Rahmani, Daniyal J. Jafree, Peter David Lee, Paul Tafforeau, Joseph Brunet, Sonal Nandanwar, Joseph Jacob, Alexandre Bellier, Maximilian Ackermann, Danny David Jonigk et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
65. Tissue Clearing and Its Application in Nanoparticle Development
    Zhouyi Rong, Ali Ertürk, Yamei Tang, Hongcheng Mai · 2025 · Small
66. An open-source photobleacher for fluorescence imaging of large pigment-rich tissues
    Tatsuya C. Murakami, Nick Belenko, Griffin Dennis, Cuidong Wang, Maria Esterlita Siantoputri, Yurie Maeda, Christina Pressl, Nathaniel Heintz · 2025 · Proceedings of the National Academy of Sciences
67. A novel protein-preserving passive tissue clearing approach using sodium cholate and urea for whole-organ imaging
    Kitae Kim, Kwangbae Lee, Taehoon Kang, Jungmihn Lee, Wonseok Lee, Ji Yeoun Lee, Sunghoe Chang · 2025 · Experimental & Molecular Medicine
68. Artificial intelligence-driven whole-brain cell mapping with highly multiplexed in situ hybridization
    Tatsuya C. Murakami, Meng Xia, Yurie Maeda, Yuejia Yin, Paolo Emilio Barbano, Ziyi Lin, Tomoyuki Mano, Kazuki Tainaka, Sam Reiter, Nathaniel Heintz · 2026 · Neuron
69. aDISCO: A clearing method to enable 3D microscopy of large archival paraffin-embedded human tissue blocks
    Anna Maria Reuss, Dominik Groos, Martina Cerisoli, Lena Nordberg, Lukas D. Frick, Fabian F. Voigt, Nikita Vladimirov, Philipp Bethge, Regina Reimann, Fritjof Helmchen et al. · 2026 · Science Advances
70. Brain-wide immunolabeling and tissue clearing applications for engram research
    Alessandra Franceschini, Michelle Jin, Claire W. Chen, Ludovico Silvestri, Alessia Mastrodonato, C. Denny · 2025 · Neurobiology of Learning and Memory
71. ADAPT-3D:accelerated deep adaptable processing of tissue for 3-dimensional fluorescence tissue imaging for research and clinical settings
    Daniel D. Lee, Kevin A. Telfer, Deanna L. Davis, Leon C. D. Smyth, Rahul Prashanth Ravindran, Rafael Sanguinetti Czepielewski, Christopher G. Huckstep, Siling Du, Kento Kurashima, Ajay Kumar Jain et al. · 2025 · Scientific Reports
72. Seeing the Full Picture: Advances in 3D Cell Culture Microscopy
    Joseph Martin · 2020 · BioTechniques
73. Proteomics of spatially identified tissues in whole organs
    Harsharan S. Bhatia, Andreas‐David Brunner, Zhouyi Rong, Hongcheng Mai, Marvin Thielert, Rami Al-Maskari, Johannes Christian Paetzold, Florian Kofler, Mihail Ivilinov Todorov, Mayar Ali et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
74. Preparation of large biological samples for high-resolution, hierarchical, multi-modal imaging
    Joseph Brunet, Claire Walsh, Willi Linus Wagner, Alexandre Bellier, Christopher Werlein, Sebastian Marussi, Danny David Jonigk, Stijn E. Verleden, Maximilian Ackermann, Peter David Lee et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
75. Three-dimensional imaging and single-cell transcriptomics of the human kidney implicate perturbation of lymphatics in alloimmunity
    Daniyal J. Jafree, Benjamin J. Stewart, Maria Kolatsi‐Joannou, Benjamin Michael Davis, Hannah J Mitchell, Lauren G. Russell, Lucía Marinas del Rey, William J. Mason, Byung Il Lee, Lauren Heptinstall et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
76. Efficient image analysis for large-scale next generation histopathology using pAPRica
    Jules Scholler, Joel Jonsson, Tomás Jordá-Siquier, Ivana Gantar, Laura Batti, Bevan L. Cheeseman, Stéphane Pagès, Ivo F. Sbalzarini, Christophe M. Lamy · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
77. Whole mouse body histology using standard IgG antibodies
    Hongcheng Mai, Jie Luo, Luciano Hoeher, Rami Al-Maskari, Izabela Horvath, Johannes Christian Paetzold, Mihail Ivilinov Todorov, Farida Hellal, Ali Ertürk · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
78. Multidimensional Analysis of the Adult Human Heart in Health and Disease using Hierarchical Phase-Contrast Tomography (HiP-CT)
    Joseph Brunet, Andrew C. Cook, Claire Walsh, James J. Cranley, Paul Tafforeau, Klaus Engel, Camille Berruyer, E. Burke O’Leary, Alexandre Bellier, Ryo Torii et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
79. A deep-learning framework reveals whole-body perturbations at cell level
    Kaltenecker, Doris, Horvath, Izabela, Al-Maskari, Rami, Chen, Ying, Kolabas, Zeynep Ilgin, Hoeher, Luciano, Todorov, Mihail, Minde, David-Paul, Kapoor, Saketh, Turhan, Sena Gül et al. · 2026 · Nature
80. Decoding tissue complexity: multiscale mapping of chemistry–structure–function relationships through advanced visualization technologies
    Zhiyuan Zhao, Haijun Cui, Haitao Cui · 2025 · Journal of Materials Chemistry B
81. Unveiling Multidimensional Physicochemical Design Principles for Tissue Processing Hydrogels
    Sangjae Kim, Siheon Lee, Jinsoo Na, Junghoon Choo, In-Ho Kim, Junsang Doh, Jeong‐Yun Sun, Chang Yeol Lee, Juhyuk Park · 2025 · Advanced Functional Materials
82. Three-dimensional quantitative tissue clearing reveals differences in osteovascular niche of aged and young human mesenchymal stromal cells
    Nelson Tsz Long Chu, Ostap A. Dregval, Yu-Wei Chang, Emil Kriukov, Xin Tian, Xin Liu, Dana Trompet, Misty Shuo Zhang, Lei Li, Zhong Li et al. · 2026 · Nature Biomedical Engineering
83. Methods for dynamic and whole volume imaging of the zebrafish heart
    Isaac Bakis, Yuhan Sun, Laila M. Abd Elmagid, Xidi Feng, Mher Garibyan, Joycelyn K. Yip, Fang Zhou Yu, Sayali Chowdhary, Gerardo Esteban Fernandez, Jingli Cao et al. · 2023 · Developmental Biology
84. Revealing intact neuronal circuitry in centimeter-sized formalin-fixed paraffin-embedded brain
    Ya‐Hui Lin, Li-Wen Wang, Yen‐Hui Chen, Yi-Chieh Chan, Shang‐Hsiu Hu, Sheng‐Yan Wu, Chi‐Shiun Chiang, Guan‐Jie Huang, Shang‐Da Yang, Shi‐Wei Chu et al. · 2024 · eLife
85. A three dimensional immunolabeling method with peroxidase-fused nanobodies and fluorochromized tyramide-glucose oxidase signal amplification
    Kenta Yamauchi, Masato Koike, Hiroyuki Hioki · 2025 · Communications Biology
86. Preliminary In Vitro Assessment of Decellularized Porcine Descending Aorta for Clinical Purposes
    Martina Casarin, Tiago Moderno Fortunato, Saima Jalil Imran, Martina Todesco, Deborah Sandrin, Massimo Marchesan, Gino Gerosa, Filippo Romanato, Andrea Bagno, Fabrizio Dal Moro et al. · 2023 · Journal of Functional Biomaterials
87. A multiwell plate approach to increase the sample throughput during tissue clearing
    Fumito Akiyama, Katsuhiko Matsumoto, Katsunari Yamashita, Akio Oishi, Takashi Kitaoka, Hiroki R. Ueda · 2024 · Nature Protocols
88. Optimizing tissue clearing and imaging methods for human brain tissue
    Min Sun Kim, Jang Ho Ahn, Ji Eun Mo, Ha Young Song, Deok-Hyeon Cheon, Seong Ho Yoo, Hyung Jin Choi · 2021 · Journal of International Medical Research
89. Immunolabeling-compatible PEGASOS tissue clearing for high-resolution whole mouse brain imaging
    Pan Gao, Matthew Rivera, Xiaoxiao Lin, Todd C. Holmes, Hu Zhao, Xiangmin Xu · 2024 · Frontiers in Neural Circuits
90. Mesoscopic Optical Imaging of the Pancreas—Revisiting Pancreatic Anatomy and Pathophysiology
    Tomas Alanentalo, Max Hahn, Stefanie M. A. Willekens, Ulf Ahlgren · 2021 · Frontiers in Endocrinology
91. MAX: a simple, affordable, and rapid tissue clearing reagent for 3D imaging of wide variety of biological specimens
    Boram Lee, Ju‐Hyun Lee, Dai Hyun Kim, Eun Sil Kim, Bo Kyoung Seo, Im Joo Rhyu, Woong Sun · 2022 · Scientific Reports
92. First application of three‐dimensional light sheet fluorescence microscopy to human testicular tumors: New perspectives in histopathology
    Diana Pinkert‐Leetsch, Ahmad Kareem, Simon F. Merz, Marc Teckentrup, Alexander Fichtner, Felix Bremmer, Jeannine Missbach‐Guentner · 2025 · Andrology
93. Evaluation of the effects of clearing agents, fixation, and process durations on cardiovascular tissue imaging with second harmonic generation and multi-photon modalities
    Maedeh Makki, Zachary A. Molander, Sergio A. Pineda‐Castillo, Devin W. Laurence, Shubhra Singhal, Yasmin Eltwafsha, Gerhard A. Holzapfel, Tingting Gu, Chung‐Hao Lee · 2025 · Frontiers in Bioengineering and Biotechnology
94. Advances in tissue optical clearing for 3D imaging in large animal
    Yating Deng, Jianyi Xu, Tingting Yu, Dan Yan Zhu · 2025 · Frontiers of Optoelectronics
95. Whole-Kidney Three-Dimensional Staining with CUBIC
    Sho Hasegawa, Masaomi Nangaku · 2022 · Journal of Visualized Experiments
96. A robust vessel-labeling pipeline with high tissue clearing compatibility for 3D mapping of vascular networks
    Yating Deng, Jingtan Zhu, Xiaomei Liu, Junyao Dai, Tingting Yu, Dan Zhu · 2024 · iScience
97. Comprehensive evaluation and application of tissue clearing techniques for 3-D visualization of splenic neural and immune architecture
    Jianing Li, Letian He, Wenling Wang, Siyu Wang, Dan Zhang, Liyun Liang, Guang-Ping Song, Yijian Zhang, Shaoqing Yu, Lei Wang et al. · 2025 · American Journal of Physiology-Cell Physiology
98. Protocol for 3D-guided sectioning and deep cell phenotyping via light sheet imaging and 2D spatial multiplexing
    Kevin Bigott, Victoria Schoppel, Manuel Martinez-Osuna, Leon Osinski, Marie-Catherine Tiveron, Daniel Barleben, Simon F. Bornemann, Harold Cremer, Christoph Herbel, Andreas Bosio et al. · 2025 · STAR Protocols
99. Tissue Optical Clearing for Biomedical Imaging: From In Vitro to In Vivo
    Tingting Yu, Dongyu Li, Dan Yan Zhu · 2021 · Advances in experimental medicine and biology
100. The Blood‐Brain Barrier in Both Humans and Rats: A Perspective From 3D Imaging
     Aiwen Chen, Gavin Volpato, Alice Pong, Emma C. Schofield, Jun Huang, Zizhao Qiu, George Paxinos, Huazheng Liang · 2024 · International Journal of Biomedical Imaging