A compendium of chromatin contact maps reveals spatially active regions in the human genome

Schmitt, Anthony D., Hu, Ming, Jung, Inkyung, Xu, Zheng, Qiu, Yunjiang, Tan, Catherine L., Li, Yun, Lin, Shin, Lin, Yiing, Barr, Cathy L., Ren, Bing·2016·Cell Reports
DOI 10.1016/j.celrep.2016.10.061

Cited by (899)

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  20. Additional file 1 of Epigenetic landscapes of intracranial aneurysm risk haplotypes implicate enhancer function of endothelial cells and fibroblasts in dysregulated gene expression
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  22. Additional file 3 of Mapping the evolving landscape of super-enhancers during cell differentiation
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  26. Additional file 1 of Predictability of polygenic risk score for progression to dementia and its interaction with APOE ε4 in mild cognitive impairment
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  28. Additional file 1 of Identification of a psychiatric risk gene NISCH at 3p21.1 GWAS locus mediating dendritic spine morphogenesis and cognitive function
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  30. Additional file 3 of Ultra-low-coverage genome-wide association study—insights into gestational age using 17,844 embryo samples with preimplantation genetic testing
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  31. Additional file 10 of Hierarchical chromatin features reveal the toxin production in Bungarus multicinctus
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  32. Additional file 1 of Deletion of a non-canonical regulatory sequence causes loss of Scn1a expression and epileptic phenotypes in mice
    Jess Haigh, Anna Adhikari, Nycole A. Copping, Tyler W. Stradleigh, A. Ayanna Wade, Catta-Preta, Rinaldo, Su-Feher, Linda, Iva Zdilar, Sarah J. Morse, Timothy A. Fenton et al. · 2021 · Figshare
  33. Additional file 1 of Genetic impacts on DNA methylation help elucidate regulatory genomic processes
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  36. Additional file 6 of Hierarchical chromatin features reveal the toxin production in Bungarus multicinctus
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  39. Additional file 8 of Hierarchical chromatin features reveal the toxin production in Bungarus multicinctus
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  41. Additional file 9 of Hierarchical chromatin features reveal the toxin production in Bungarus multicinctus
    Liao, Xuejiao, Guo, Shuai, Xianmei Yin, Liao, Baosheng, Li, Mingqian, He Su, Li, Qiushi, Pei, Jin, Gao, Jihai, Juan Lei et al. · 2021 · Figshare
  42. Additional file 2 of Deletion of a non-canonical regulatory sequence causes loss of Scn1a expression and epileptic phenotypes in mice
    Jess Haigh, Anna Adhikari, Nycole A. Copping, Tyler W. Stradleigh, A. Ayanna Wade, Catta-Preta, Rinaldo, Su-Feher, Linda, Iva Zdilar, Sarah J. Morse, Timothy A. Fenton et al. · 2021 · Figshare
  43. Additional file 10 of Common DNA sequence variation influences 3-dimensional conformation of the human genome
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  45. Additional file 4 of Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome
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  46. Additional file 4 of Mapping the evolving landscape of super-enhancers during cell differentiation
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  47. Additional file 7 of Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome
    Jacob Matthew Schreiber, Timothy Durham, Jeffrey A. Bilmes, William Stafford Noble · 2020 · Figshare
  48. Additional file 2 of SVFX: a machine learning framework to quantify the pathogenicity of structural variants
    Kumar, Sushant, Arif O. Harmanci, Jagath Vytheeswaran, Mark Gerstein · 2020 · Figshare
  49. Additional file 4 of Deletion of a non-canonical regulatory sequence causes loss of Scn1a expression and epileptic phenotypes in mice
    Jess Haigh, Anna Adhikari, Nycole A. Copping, Tyler W. Stradleigh, A. Ayanna Wade, Catta-Preta, Rinaldo, Su-Feher, Linda, Iva Zdilar, Sarah J. Morse, Timothy A. Fenton et al. · 2021 · Figshare
  50. Additional file 3 of Deletion of a non-canonical regulatory sequence causes loss of Scn1a expression and epileptic phenotypes in mice
    Jess Haigh, Anna Adhikari, Nycole A. Copping, Tyler W. Stradleigh, A. Ayanna Wade, Catta-Preta, Rinaldo, Su-Feher, Linda, Iva Zdilar, Sarah J. Morse, Timothy A. Fenton et al. · 2021 · Figshare
  51. Additional file 6 of Mapping the evolving landscape of super-enhancers during cell differentiation
    Kai, Yan, Li, Bin E., Zhu, Ming, Grace Y. Li, Chen, Fei, Han, Yingli, Cha, Hye Ji, Stuart H. Orkin, Cai, Wenqing, Huang, Jialiang et al. · 2021 · Figshare
  52. Additional file 2 of 3D genome organization in the epithelial-mesenchymal transition spectrum
    Pang, Qing You, Tuan Zea Tan, Vignesh Sundararajan, Chiu, Yi-Chia, Edward Yu Wing Chee, Vin Yee Chung, Choolani, Mahesh A., Huang, Ruby Yun-Ju · 2022 · Figshare
  53. Additional file 6 of Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome
    Jacob Matthew Schreiber, Timothy Durham, Jeffrey A. Bilmes, William Stafford Noble · 2020 · Figshare
  54. Additional file 1 of Common DNA sequence variation influences 3-dimensional conformation of the human genome
    David U. Gorkin, Yunjiang Qiu, Hu, Ming, Kipper Fletez‐Brant, Tristin Liu, Anthony D. Schmitt, Amina Noor, Joshua Chiou, Kyle J. Gaulton, Jonathan L. Sebat et al. · 2020 · Figshare
  55. Additional file 32 of Placental methylome reveals a 22q13.33 brain regulatory gene locus associated with autism
    Zhu, Yihui, J. Antonio Gomez, Laufer, Benjamin I., Charles E. Mordaunt, Julia S. Mouat, Daniela C. Soto, Megan Y. Dennis, Kelly Suzanne Benke, Kelly M. Bakulski, John Dou et al. · 2022 · Figshare
  56. Additional file 1 of Mapping the evolving landscape of super-enhancers during cell differentiation
    Kai, Yan, Li, Bin E., Zhu, Ming, Grace Y. Li, Chen, Fei, Han, Yingli, Cha, Hye Ji, Stuart H. Orkin, Cai, Wenqing, Huang, Jialiang et al. · 2021 · Figshare
  57. Additional file 8 of Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome
    Jacob Matthew Schreiber, Timothy Durham, Jeffrey A. Bilmes, William Stafford Noble · 2020 · Figshare
  58. Additional file 7 of Genetic impacts on DNA methylation help elucidate regulatory genomic processes
    Sergio Villicaña, Castillo-Fernandez, Juan, Eilis J. Hannon, Colette Christiansen, Tsai, Pei-Chien, Jane Maddock, Diana J. Kuh, Matthew J Suderman, Christine Power, Caroline Laura Relton et al. · 2023 · Figshare
  59. Additional file 2 of Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome
    Jacob Matthew Schreiber, Timothy Durham, Jeffrey A. Bilmes, William Stafford Noble · 2020 · Figshare
  60. Additional file 2 of Ultra-low-coverage genome-wide association study—insights into gestational age using 17,844 embryo samples with preimplantation genetic testing
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