A compendium of chromatin contact maps reveals spatially active regions in the human genome

Schmitt, Anthony D., Hu, Ming, Jung, Inkyung, Xu, Zheng, Qiu, Yunjiang, Tan, Catherine L., Li, Yun, Lin, Shin +3 more·2016·Cell Reports

Cited by (899)

Items 301–400 of 899

  1. Analyzing the 3D chromatin organization coordinating with gene expression regulation in B-cell lymphoma
    Luís Augusto Eijy Nagai, Sung‐Joon Park, Kenta Nakai · 2019 · BMC Medical Genomics
  2. Microscopic Chromosomal Structural and Dynamical Origin of Cell Differentiation and Reprogramming
    Xiakun Chu, Jin Wang · 2020 · Advanced Science
  3. Super hotspots and super coldspots in the repair of UV-induced DNA damage in the human genome
    Yuchao Jiang, Wentao Li, Laura A. Lindsey‐Boltz, Yuchen Yang, Yun Li, Aziz Sancar · 2021 · Journal of Biological Chemistry
  4. Global analysis of histone modifications and long-range chromatin interactions revealed the differential cistrome changes and novel transcriptional players in human dilated cardiomyopathy
    Chia-Feng Liu, Armen Abnousi, P. Bazeley, Y. Ni, M. Morley, Christine S. Moravec, Ming Hu, W. H. Wilson Tang · 2020 · Journal of Molecular and Cellular Cardiology
  5. Integrative analyses prioritize GNL3 as a risk gene for bipolar disorder
    Q. Meng, Le Wang, Ru-Jia Dai, Jiawen Wang, Zongyao Ren, Sihan Liu, Yan Xia, Yi Jiang, Fangyuan Duan, Kang-Li Wang et al. · 2020 · Molecular Psychiatry
  6. Changes in Vibrio natriegens Growth Under Simulated Microgravity
    Man Yin, Bingyu Ye, Yifei Jin, Lin Liu, Yan Zhang, Ping Li, Yahao Wang, Ye Li, Yanping Han, Wenlong Shen et al. · 2020 · Frontiers in Microbiology
  7. Low frequency variants associated with leukocyte telomere length in the Singapore Chinese population
    Xuling Chang, Resham L Gurung, Ling Wang, Aizhen Jin, Zheng Li, Renwei Wang, Kenneth B. Beckman, Jennifer M. Adams‐Haduch, Wee Yang Meah, Kar Seng Sim et al. · 2021 · Communications Biology
  8. ChromLoops: a comprehensive database for specific protein-mediated chromatin loops in diverse organisms
    Qiangwei Zhou, Cheng Sheng, Shanshan Zheng, Zhenji Wang, Pengpeng Guan, Zhixian Zhu, Xingyu Huang, Cong Zhou, Guoliang Li · 2022 · Nucleic Acids Research
  9. The Genetic Architectures of Functional and Structural Connectivity Properties within Cerebral Resting-State Networks
    Elleke Tissink, Josefin Werme, Siemon C. de Lange, Jeanne E. Savage, Yongbin Wei, Christiaan de Leeuw, Mats Nagel, Daniëlle Posthuma, Martijn P. van den Heuvel · 2023 · eNeuro
  10. Disease clusters subsequent to anxiety and stress-related disorders and their genetic determinants
    Xin Han, Qing Shen, Can Hou, Huazhen Yang, Wenwen Chen, Yu Zeng, Yuanyuan Qu, Chen Suo, Weimin Ye, Fang Fang et al. · 2024 · Nature Communications
  11. Multi-SNP mediation intersection-union test
    Wujuan Zhong, Cassandra Nichole Spracklen, Karen L. Mohlke, Xiaojing Zheng, Jason P. Fine, Yun Li · 2019 · Bioinformatics
  12. Function of BRD4 in the pathogenesis of high glucose‑induced cardiac hypertrophy
    Qian Wang, Yuxin Sun, Tianshu Li, Lianqin Liu, Yunxia Zhao, Liyuan Li, Ling Zhang, Yan Meng · 2018 · Molecular Medicine Reports
  13. A genome-wide association study implicatesNR2F2in lymphangioleiomyomatosis pathogenesis
    Wonji Kim, Krinio Giannikou, John R. Dreier, Sanghun Lee, Magdalena Ewa Tyburczy, Edwin K. Silverman, Elżbieta Radzikowska, Shulin Wu, Chin‐Lee Wu, Elizabeth P. Henske et al. · 2019 · European Respiratory Journal
  14. Whole genome sequencing identifies structural variants contributing to hematologic traits in the NHLBI TOPMed program
    Marsha M. Wheeler, Adrienne M. Stilp, Shuquan Rao, Bjarni V. Halldórsson, Doruk Beyter, Jia Wen, Anna V. Mikhaylova, Caitlin McHugh, John Lane, Min-Zhi Jiang et al. · 2022 · Nature Communications
  15. In silico discovery of repetitive elements as key sequence determinants of 3D genome folding
    Laura M. Gunsalus, Michael J. Keiser, Katherine S. Pollard · 2023 · Cell Genomics
  16. From association to mechanism in complex disease genetics: the role of the 3D genome
    Yao Fu, Kandice L. Tessneer, Chuang Li, Patrick M. Gaffney · 2018 · Arthritis Research & Therapy
  17. Joint analyses of multi-tissue Hi-C and eQTL data demonstrate close spatial proximity between eQTLs and their target genes
    Jingting Yu, Ming Hu, Chun Li · 2019 · BMC Genetics
  18. Radionuclide partitioning coefficients in soils and plants and their correlation.
    Marsha I. Sheppard · 1985 · PubMed
  19. Chromatin Profiling Techniques: Exploring the Chromatin Environment and Its Contributions to Complex Traits
    Anjali Chawla, Corina Nagy, Gustavo Turecki · 2021 · International Journal of Molecular Sciences
  20. Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data
    P. Kos, Aleksandra Galitsyna, S. Ulianov, M. Gelfand, S. Razin, A. Chertovich · 2021 · PLoS Comput. Biol.
  21. Cell cycle dynamics and developmental dynamics of the 3D genome: toward linking the two timescales
    Hisashi Miura, Ichiro Hiratani · 2022 · Current Opinion in Genetics & Development
  22. Increased Brain Volume from Higher Cereal and Lower Coffee Intake: Shared Genetic Determinants and Impacts on Cognition and Metabolism
    Jujiao Kang, Tianye Jia, Zeyu Jiao, Chun Shen, Chao Xie, Wei Cheng, Barbara Jacquelyn Sahakian, David Waxman, Jianfeng Feng · 2020 · Cerebral Cortex
  23. A Comparison of Topologically Associating Domain Callers Based on Hi-C Data
    Kun Liu, Hong-Dong Li, Yaohang Li, Jun Wang, Jianxin Wang · 2022 · IEEE Transactions on Computational Biology and Bioinformatics
  24. Splenic clearance of rigid erythrocytes as an inherited mechanism for splenomegaly and natural resistance to malaria
    Benoît Henry, Geoffroy Volle, Hilaire Akpovi, Laure Gineau, Camille Roussel, Papa Alioune Ndour, Félicien Tossou, Felipe Suárez, FRISO P. PALSTRA, Aurélie Fricot et al. · 2022 · EBioMedicine
  25. Genome-wide meta-analyses reveal novel loci for verbal short-term memory and learning
    Jari M. T. Lahti, Samuli Tuominen, Qiong Yang, Giulio Pergola, Shahzad Ahmad, Najaf Amin, Nicola J. Armstrong, Alexa Beiser, Katharina Bey, Joshua C. Bis et al. · 2022 · Molecular Psychiatry
  26. Diverse ancestry whole-genome sequencing association study identifies TBX5 and PTK7 as susceptibility genes for posterior urethral valves
    Melanie Chan, Omid Sadeghi‐Alavijeh, Filipa M. Lopes, Alina Christine Hilger, Horia C. Stanescu, C Voinescu, Glenda M. Beaman, William G. Newman, Marcin Zaniew, Stefanie Weber et al. · 2022 · eLife
  27. Long interspersed nuclear element 1 and B1/Alu repeats blueprint genome compartmentalization
    Siyang Li, Xiaohua Shen · 2023 · Current Opinion in Genetics & Development
  28. A distant global control region is essential for normal expression of anterior HOXA genes during mouse and human craniofacial development
    Andrea Scarpa Wilderman, Eva D’haene, Machteld Baetens, Tara N. Yankee, Emma Wentworth Winchester, Nicole C. Glidden, Ellen Roets, Jo Van Dorpe, Sandra Janssens, Danny E. Miller et al. · 2024 · Nature Communications
  29. The SUMO protease SENP1 and the chromatin remodeler CHD3 interact and jointly affect chromatin accessibility and gene expression
    Fernando Rodríguez-Castañeda, Roza Berhanu Lemma, Ignacio Cuervo, Mads Bengtsen, Lisa Marie Moen, Marit Ledsaak, Ragnhild Eskeland, Odd S. Gabrielsen · 2018 · Journal of Biological Chemistry
  30. Chromosome contacts in activated T cells identify autoimmune disease candidate genes
    Oliver S. Burren, Arcadio Rubio García, Biola M. Javierre, Daniel B. Rainbow, Jonathan Cairns, Nicholas J Cooper, John J. Lambourne, Ellen C. Schofield, Xaquín Castro Dopico, Ricardo C. Ferreira et al. · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  31. Cancer Is Associated with Alterations in the Three-Dimensional Organization of the Genome
    Lifei Li, Nicolai K. H. Barth, Christian P. Pilarsky, Leila Taher · 2019 · Cancers
  32. Parsing the Functional Impact of Noncoding Genetic Variants in the Brain Epigenome
    Samuel K. Powell, Callan P. O’Shea, Kristen Brennand, Schahram Akbarian · 2020 · Biological Psychiatry
  33. Crosstalk between Hepatitis B Virus and the 3D Genome Structure
    Joao Diogo Dias, Nazim Sarica, Axel Cournac, Romain Koszul, Christine Neuveut · 2022 · Viruses
  34. The relevance of chromatin architecture to genome rearrangements in Drosophila
    Dynisty Wright, Stephen W. Schaeffer · 2022 · Philosophical Transactions of the Royal Society B Biological Sciences
  35. Pleiotropic modifiers of age-related diabetes and neonatal intestinal obstruction in cystic fibrosis
    Melis A. Aksit, Hua Ling, Rhonda G. Pace, Karen S. Raraigh, Frankline Onchiri, Anna Faino, Kymberleigh A. Pagel, Elizabeth Pugh, Adrienne M. Stilp, Quan Sun et al. · 2022 · The American Journal of Human Genetics
  36. The genetic architecture of the human hypothalamus and its involvement in neuropsychiatric behaviours and disorders
    Shi-Dong Chen, Jia You, Wei Zhang, Bang‐Sheng Wu, Yi‐Jun Ge, Shitong Xiang, Jing Du, Kevin Kuo, Tobias Banaschewski, Gareth J. Barker et al. · 2024 · Nature Human Behaviour
  37. Transcriptional Enhancers in the FOXP2 Locus Underwent Accelerated Evolution in the Human Lineage
    Alfredo Leandro Caporale, Catalina M Gonda, Lucía F. Franchini · 2019 · Molecular Biology and Evolution
  38. The hierarchical folding dynamics of topologically associating domains are closely related to transcriptional abnormalities in cancers
    Guifang Du, Hao Li, Yang Ding, Shuai Jiang, Hao Hong, Jingbo Gan, Longteng Wang, Yuanping Yang, Yinyin Li, Xin Huang et al. · 2021 · Computational and Structural Biotechnology Journal
  39. IL-1 Transcriptional Responses to Lipopolysaccharides Are Regulated by a Complex of RNA Binding Proteins
    Lihua Shi, Li Song, Kelly Maurer, Ying Dou, Vishesh R. Patel, Chun Su, Michelle E. Leonard, Sumei Lu, Kenyaita M. Hodge, Annabel Torres et al. · 2020 · The Journal of Immunology
  40. Single-cell damagenome profiling unveils vulnerable genes and functional pathways in human genome toward DNA damage
    Zhu, Qiangyuan, Niu, Yichi, Gundry, Michael, Zong, Chenghang · 2021 · Science Advances
  41. Functional analysis of the 1p34.3 risk locus implicates GNL2 in high-grade serous ovarian cancer
    Koji Nakamura, Brett M. Reid, Ann Chen, Zhihua Chen, Ellen L. Goode, Jennifer B. Permuth, Jamie K. Teer, Jonathan P. Tyrer, Xiaoqing Yu, Peter A. Kanetsky et al. · 2021 · The American Journal of Human Genetics
  42. Genetic architecture of spatial electrical biomarkers for cardiac arrhythmia and relationship with cardiovascular disease
    William John Young, Jeffrey Haessler, Jan Walter Benjamins, L. Repetto, Jie Yao, Aaron J. Isaacs, Andrew Robert Harper, Julia Ramírez, Sophie Garnier, Stefan van Duijvenboden et al. · 2023 · Nature Communications
  43. Advances and Challenges for GWAS Analysis in Cardiac Diseases: A Focus on Coronary Artery Disease (CAD)
    Shahid Ullah Khan, Sumbul Saeed, Amnah Mohammed Alsuhaibani, Sumaya Fatima, Khalil ur Rehman, Umber Zaman, Muneeb Ullah, Moamen Salah El-Deen Refat, Kun Lu · 2023 · Current Problems in Cardiology
  44. Machine and Deep Learning Methods for Predicting 3D Genome Organization
    Brydon P. G. Wall, My Nguyen, Joshua Chuck Harrell, Mikhail G. Dozmorov · 2024 · Methods in molecular biology
  45. Extensive long-range polycomb interactions and weak compartmentalization are hallmarks of human neuronal 3D genome
    Ilya A Pletenev, Mariia Bazarevich, Diana Zagirova, Anna D. Kononkova, Alexander V. Cherkasov, Olga Efimova, Eugenia A. Tiukacheva, Kirill V. Morozov, Kirill A. Ulianov, Dmitriy Komkov et al. · 2024 · Nucleic Acids Research
  46. 3D Genome Organization Influences the Chromosome Translocation Pattern
    Rachel Patton McCord, Adayabalam S. Balajee · 2018 · Advances in experimental medicine and biology
  47. The structural and functional roles of CTCF in the regulation of cell type-specific and human disease-associated super-enhancers
    Ha Youn Shin · 2018 · Genes & Genomics
  48. Boost-HiC: computational enhancement of long-range contacts in chromosomal contact maps
    Léopold Carron, Jean Baptiste Morlot, V. Matthys, Annick Lesne, Julien Mozziconacci · 2018 · Bioinformatics
  49. Aggregated network centrality shows non-random structure of genomic and proteomic networks
    Anup Kumar Halder, Michał Denkiewicz, Kaustav Sengupta, Subhadip Basu, Dariusz Plewczyński · 2019 · Methods
  50. Comprehensive analysis of cancer breakpoints reveals signatures of genetic and epigenetic contribution to cancer genome rearrangements
    Kseniia Cheloshkina, Maria S. Poptsova · 2021 · PLoS Computational Biology
  51. Characterization of Structural Variations in the Context of 3D Chromatin Structure.
    Kyukwang Kim, Junghyun Eom, Inkyung Jung · 2019 · PubMed Central
  52. Chromatin regulatory dynamics of early human small intestinal development using a directed differentiation model
    Yu-Han Hung, Sha Huang, Michael K. Dame, Qianhui Yu, Qing Cissy Yu, Yi Arial Zeng, J. Gray Camp, Jason R. Spence, Praveen Sethupathy · 2020 · Nucleic Acids Research
  53. Condensin II inactivation in interphase does not affect chromatin folding or gene expression
    Nezar A. Abdennur, Wibke Schwarzer, Aleksandra Pękowska, Indra A. Shaltiël, Wolfgang K. Huber, Christian H. Haering, Leonid A. Mirny, François Spitz · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  54. Common variants contribute to intrinsic human brain functional networks
    Bingxin Zhao, Tengfei Li, Stephen M. Smith, Di Xiong, Xifeng Wang, Yue Yang, Tianyou Luo, Ziliang Zhu, Yue Shan, Nana Matoba et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  55. Chromatin structure changes during various processes from a DNA sequence view
    Hui Quan, Ying Yang, Sirui Liu, Hao Tian, Yue Xue, Yi Qin Gao · 2019 · Current Opinion in Structural Biology
  56. NEUROD1 Intrinsically Initiates Differentiation of Induced Pluripotent Stem Cells into Neural Progenitor Cells
    Won‐Young Choi, Ji-Hyun Hwang, Ann‐Na Cho, Andrew Lee, Inkyung Jung, Seung‐Woo Cho, Lark Kyun Kim, Young-Joon Kim · 2020 · Molecules and Cells
  57. Three‐dimensional genome structure and function
    Hao Liu, Hsiangyu Tsai, Maoquan Yang, Guozhi Li, Qian Bian, Gang Ding, Dandan Wu, Jiewen Dai · 2023 · MedComm
  58. Multi-omics analysis reveals the dynamic interplay between Vero host chromatin structure and function during vaccinia virus infection
    Vrinda Venu, Cullen Roth, Samantha Adikari, Eric M. Small, Shawn R. Starkenburg, Karissa Y. Sanbonmatsu, Christina R. Steadman · 2024 · Communications Biology
  59. The overlapping genetic architecture of psychiatric disorders and cortical brain structure
    Zhiqiang Sha, Varun Warrier, Richard A. I. Bethlehem, Laura M. Schultz, Alison K. Merikangas, Kevin Y. Sun, Raquel E. Gur, Raquel E. Gur, Russell Taki Shinohara, Michael J. Gandal et al. · 2025 · Nature Mental Health
  60. Revealing Gene Function and Transcription Relationship by Reconstructing Gene-Level Chromatin Interaction
    Li Liu, Qian‐Zhong Li, Wen Yi Jin, Hao Lv, Hao Lin · 2019 · Computational and Structural Biotechnology Journal
  61. Highly interacting regions of the human genome are enriched with enhancers and bound by DNA repair proteins
    Haitham Sobhy, Rajendra Kumar, Jacob Lewerentz, Ludvig Lizana, Per Stenberg · 2019 · Scientific Reports
  62. First genome-wide association study of non-severe malaria in two birth cohorts in Benin
    Jacqueline Milet, Anne Boland, Pierre Luisi, Audrey Sabbagh, Ibrahim Abiodoun Sadissou, Paulin Sonon, Nadia Domingo, FRISO P. PALSTRA, Laure Gineau, David Courtin et al. · 2019 · Human Genetics
  63. Association between genes regulating neural pathways for quantitative traits of speech and language disorders
    Penelope H. Benchek, Robert P. Igo, Heather A. Voss-Hoynes, Yvonne E. Wren, Gabrielle J. Miller, Barbara J. Truitt, Wen Zhang, Michael D. Osterman, Lisa A. Freebairn, Jessica Tag et al. · 2021 · npj Genomic Medicine
  64. Hemispheric Asymmetry in the Genetic Overlap between Schizophrenia and White Matter Microstructure
    Yujie Zhang, Mengge Liu, Shaoying Wang, Wanwan Zhang, Haoyang Dong, Qian Qian, Yue Wu, Qian Wu, Jinglei Xu, Ying Zhai et al. · 2025 · Cyborg and Bionic Systems
  65. Epigenetic Regulation of WNT3A Enhancer during Regeneration of Injured Cortical Neurons
    Chu-Yuan Chang, Jui‐Hung Hung, Liang-Wei Huang, Joye Li, Ka Shing Fung, Cheng-Fu Kao, Linyi Chen · 2020 · International Journal of Molecular Sciences
  66. Molecular and computational approaches to map regulatory elements in 3D chromatin structure
    Beoung Hun Lee, S. Rhie · 2021 · Epigenetics & Chromatin
  67. BART3D: inferring transcriptional regulators associated with differential chromatin interactions from Hi-C data
    Zhenjia Wang, Yifan Zhang, Chongzhi Zang · 2021 · Bioinformatics
  68. Machine learning for profile prediction in genomics
    Jacob Matthew Schreiber, Ritambhara Singh · 2021 · Current Opinion in Chemical Biology
  69. A new insight into cell biological and biochemical changes through aging
    Somayeh Sahabi, Davoud Jafari-Gharabaghlou, Nosratollah Zarghami · 2022 · Acta Histochemica
  70. Characterizing the polygenic overlaps of bipolar disorder subtypes with schizophrenia and major depressive disorder
    Zongchang Li, David Li, Xiaogang Chen · 2022 · Journal of Affective Disorders
  71. Haplotype-specific MAPK3 expression in 16p11.2 deletion contributes to variable neurodevelopment
    Fang Liu, Liang Chen, Zhengchang Li, Sen Zhao, Haiming Yuan, Ruen Yao, Zailong Qin, Shaofang Shangguan, Shujie Zhang, Li‐Ping Zou et al. · 2023 · Brain
  72. Sex-Specific Genetic Determinants of Right Ventricular Structure and Function
    Lars Harbaum, Jan K. Hennigs, Julian Pott, Jonna Ostermann, Christoph Sinning, Arunashis Sau, Ewa Sieliwończyk, Fu Siong Ng, Christopher J. Rhodes, Khodr Tello et al. · 2024 · American Journal of Respiratory and Critical Care Medicine
  73. Genetic basis of right and left ventricular heart shape
    Richard Burns, William John Young, Nay Aung, Luís Rocha Lopes, Perry M Elliot, Petros Syrris, Roberto Barriales Villa, Catrin Sohrabi, Steffen Erhard Petersen, Julia Ramírez et al. · 2024 · Nature Communications
  74. InTAD: chromosome conformation guided analysis of enhancer target genes
    Konstantin Okonechnikov, Serap Erkek, Jan O. Korbel, Stefan Michael Pfister, Lukas Chávez · 2019 · BMC Bioinformatics
  75. Post-traumatic stress following military deployment: Genetic associations and cross-disorder genetic correlations
    Yunpeng Wang, Karen‐Inge Karstoft, Caroline M. Nievergelt, Adam X. Maihofer, Murray B. Stein, Robert J. Ursano, Jonas Bybjerg‐Grauholm, Marie Bækvad‐Hansen, DAVID MICHAEL HOUGAARD, Ole A. Andreassen et al. · 2019 · Journal of Affective Disorders
  76. A combination of transcription factors mediates inducible interchromosomal contacts
    Seungsoo Kim, Maitreya J. Dunham, Jay Shendure · 2019 · eLife
  77. Learning representations of chromatin contacts using a recurrent neural network identifies genomic drivers of conformation
    Kevin Bradley Dsouza, Alexandra Maslova, Ediem Al-Jibury, Matthias Merkenschlager, Vijay K. Bhargava, Maxwell W. Libbrecht · 2022 · Nature Communications
  78. Transient crosslinking kinetics optimize gene cluster interactions
    Benjamin L. Walker, Dane Taylor, Josh Lawrimore, Caitlin Hult, David Adalsteinsson, Kerry Bloom, M. Gregory Forest · 2019 · PLoS Computational Biology
  79. Meta-analysis of ACE inhibitor-induced angioedema identifies novel risk locus.
    Mathey, Carina M., Maj, Carlo, Eriksson, Niclas, Krebs, Kristi, Westmeier, Julia, David, Friederike S., Koromina, Maria, Scheer, Annika B., Szabo, Nora, Wedi, Bettina et al. · 2024 · Journal of Allergy and Clinical Immunology
  80. Between form and function: the complexity of genome folding
    Oudelaar, A. Marieke, Hanssen, Lars L.P., Hardison, Ross C., Kassouf, Mira T., Hughes, Jim R., Higgs, Douglas R. · 2017 · Human Molecular Genetics
  81. Machine Learning and Deep Learning in Genetics and Genomics
    Di Wu, D. S. Karhade, M. Pillai, Min-Zhi Jiang, Le Huang, Gang Li, Hunyong Cho, J. Roach, Yun Li, K. Divaris · 2021 · Machine Learning in Dentistry
  82. Chromatin conformation of human oral epithelium can identify orofacial cleft missing functional variants
    Yao Xiao, Shengbo Jiao, Miao He, Da Lin, Huanyan Zuo, Jiahao Han, Yonghua Sun, Gang Cao, Zhi Chen, Huan Liu · 2022 · International Journal of Oral Science
  83. De novo and inherited variants in coding and regulatory regions in genetic cardiomyopathies
    Nirmal Vadgama, Mohamed Ameen, Laksshman Sundaram, Sadhana Gaddam, Casey A. Gifford, Jamal Nasir, Ioannis Karakikes · 2022 · Human Genomics
  84. Complexity of enhancer networks predicts cell identity and disease genes revealed by single-cell multi-omics analysis
    Danni Hong, Hongli Lin, Lifang Liu, Muya Shu, Jianwu Dai, Falong Lu, Mengsha Tong, Jialiang Huang · 2022 · Briefings in Bioinformatics
  85. Molecular Landscape of Tourette’s Disorder
    Joanna Widomska, Ward De Witte, Jan K. Buitelaar, Jeffrey Colm Glennon, Geert Poelmans · 2023 · International Journal of Molecular Sciences
  86. Tet-mediated DNA methylation dynamics affect chromosome organization
    Hao Tian, P. Luan, Ya-Ping Liu, Guoqiang Li · 2024 · Nucleic Acids Research
  87. Cross-continental environmental and genome-wide association study on children and adolescent anxiety and depression
    Bishal Thapaliya, Bhaskar Ray, Britny Farahdel, Pranav Suresh, Ram Sapkota, Bharath Holla, Jayant Mahadevan, Jiayu Chen, Nilakshi Vaidya, Nora I. Perrone‐Bizzozero et al. · 2024 · Frontiers in Psychiatry
  88. Multi-omics analysis in primary T cells elucidates mechanisms behind disease-associated genetic loci
    C. Shi, Dan-Yun Zhao, Jake Butler, A. Frantzeskos, S. Rossi, James Ding, C. Ferrazzano, Charlotte Wynn, R. Hum, E. Richards et al. · 2023 · Genome Biology
  89. Using Gene Expression to Annotate Cardiovascular GWAS Loci
    Matthias Heinig · 2018 · Frontiers in Cardiovascular Medicine
  90. Epithelial Cells in 2D and 3D Cultures Exhibit Large Differences in Higher-Order Genomic Interactions
    Xin Liu, Qiu Sun, Qi Wang, Chuansheng Hu, Xuecheng Chen, Hua Li, Daniel Mark Czajkowsky, Zhifeng Shao · 2021 · Genomics Proteomics & Bioinformatics
  91. From GWAS variant to function: A study of ∼148,000 variants for blood cell traits
    Quan Sun, Cheynna Crowley, Le Huang, Jia Wen, Jiawen Carmen Chen, Erik L. Bao, Paul Livermore Auer, Guillaume Lettre, Alex P. Reiner, Vijay G. Sankaran et al. · 2021 · Human Genetics and Genomics Advances
  92. Lung Function in African American Children with Asthma Is Associated with Novel Regulatory Variants of the KIT Ligand KITLG/SCF and Gene-By-Air-Pollution Interaction
    Angel C. Y. Mak, Satria P. Sajuthi, Jaehyun Joo, Shujie Xiao, Patrick M. Abou‐Sleiman, Marquitta J. White, Eunice Y. Lee, Benjamin A. Saef, Donglei Hu, Hongsheng Gui et al. · 2020 · Genetics
  93. Progressive Domain Segregation in Early Embryonic Development and Underlying Correlation to Genetic and Epigenetic Changes
    Hui Quan, Hao Tian, Sirui Liu, Yue Xue, Yu Zhang, Wei Xie, Yi Qin Gao · 2021 · Cells
  94. A large cross-ancestry meta-analysis of genome-wide association studies identifies 69 novel risk loci for primary open-angle glaucoma and includes a genetic link with Alzheimer’s disease
    Puya Gharahkhani, Eric Jorgenson, Pirro G. Hysi, Anthony P. Khawaja, Sarah A. Pendergrass, Xikun Han, Jue‐Sheng Ong, Alex William Hewitt, Ayellet V. Segrè, Robert P. Igo et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  95. Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig
    Sylvain Foissac, Sarah Djebali, Kylie Munyard, Nathalie Vialaneix, Andréa Rau, Kévin Muret, Diane Esquerré, Matthias Zytnicki, Thomas Derrien, Philippe Bardou et al. · 2018 · HAL
  96. Three-dimensional regulatory hubs support oncogenic programs in glioblastoma
    Sarah L. Breves, Dafne Campigli Di Giammartino, James Nicholson, Stéfano M. Cirigliano, Syed Raza Mahmood, Uk Jin Lee, Alexander Martinez‐Fundichely, Johannes Jungverdorben, Richa Singhania, Sandy Rajkumar et al. · 2024 · Molecular Cell
  97. PAX fusion proteins deregulate gene networks controlling mitochondrial translation in pediatric rhabdomyosarcoma
    Bhargab Kalita, Gerard Martínez-Cebrián, Justina D. McEvoy, Melody Lyn Allensworth, Michelle Knight, Alessandro Magli, Rita C. R. Perlingeiro, Michael A. Dyer, Elizabeth A. Stewart, Brian David Dynlacht · 2024 · Cell
  98. Chronic cerebral hypoperfusion induces venous dysfunction via EPAS1 regulation in mice
    Vanessa Kristina Wazny, Aparna Mahadevan, Nhi Le Uyen Nguyen, Hannah Su-Ann Wee, Ashwati Vipin, Tammy Lam, Kai Yi Tay, Jia-Xiang See, Gurveen Kaur Sandhu, Yi Jin Leow et al. · 2025 · Nature Communications
  99. Integrative Analysis of Genome, 3D Genome, and Transcriptome Alterations of Clinical Lung Cancer Samples
    Tingting Li, Ruifeng Li, Xuan Dong, Lin Shi, Miao Lin, T. Peng, Pengze Wu, Yu-Ting Liu, Xiaoting Li, Xuheng He et al. · 2021 · Genomics, Proteomics & Bioinformatics
  100. Seeing the forest through the trees: prioritising potentially functional interactions from Hi-C
    Ning Liu, Wai Yee Low, Hamid Alinejad‐Rokny, Stephen Pederson, Timothy J. Sadlon, Simon Charles Barry, James Breen · 2021 · Epigenetics & Chromatin