FMRP modulates neural differentiation through m6A-dependent mRNA nuclear export.
Open accessAbstract
N 6 -methyladenosine (m 6 A) modification of mRNA is emerging as a vital mechanism regulating RNA function. Here, we show that fragile X mental retardation protein (FMRP) reads m 6 A to promote nuclear export of methylated mRNA targets during neural differentiation. Fmr1 knockout (KO) mice show delayed neural progenitor cell cycle progression and extended maintenance of proliferating neural progenitors into postnatal stages, phenocopying methyltransferase Mettl14 conditional KO (cKO) mice that have no m 6 A modification. RNA-seq and m 6 A-seq reveal that both Mettl14 cKO and Fmr1 KO lead to the nuclear retention of m 6 A-modified FMRP target mRNAs regulating neural differentiation, indicating that both m 6 A and FMRP are required for the nuclear export of methylated target mRNAs. FMRP preferentially binds m 6 A-modified RNAs to facilitate their nuclear export through CRM1. The nuclear retention defect can be mitigated by wild-type but not nuclear export-deficient FMRP, establishing a critical role for FMRP in mediating m 6 A-dependent mRNA nuclear export during neural differentiation.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Delayed cell cycle progression and extended maintenance of immature proliferating neural progenitor cells are found in both human and mouse FXS models.
“Delayed cell cycle progression and extended maintenance of immature proliferating neural progenitor cells (NPCs) are found in both human and mouse FXS models (Edens et al., 2019; Raj et al., 2021).”
From Astrocytes in fragile X syndrome (2024) · cites this paper as Edens et al., 2019
The Results and Discussion report delayed cell-cycle progression and prolonged maintenance of proliferating neural progenitors in Fmr1-knockout mice. This paper does not establish the same findings in human FXS models, so it supports the mouse portion of the sentence but not the claim about both species. (LLM, conf=0.88)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
N6-methyladenosine-dependent regulation of messenger RNA stability
Wang, X., Lu, Z., Gomez, A., Hon, G. C., Yue, Y., Han, D., Fu, Y., Parisien, M., Dai, Q., Jia, G., et al. (2014) · Nature · doi:10.1038/nature12730 · Cited by 4,558 · cited 2× · see citing works
“…(m 6 A) is emerging as a critical mechanism regulating different aspects of RNA metabolism and function, including stability (Du et al., 2016; Ke et al., 2017; Wang et al., 2014), localization (Roundtree et al., 2017), and translation (Lin et al., 2016; Meyer et al., 2015; Wang et al., 2015).”
Self-citationComprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
Meyer, K. D., Saletore, Y., Zumbo, P., Elemento, O., Mason, C. E., & Jaffrey, S. R. (2012) · Cell · doi:10.1016/j.cell.2012.05.003 · Cited by 4,223 · see citing works
N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
Jia, G., Fu, Y., Zhao, X., Dai, Q., Zheng, G., Yang, Y., Yi, C., Lindahl, T., Pan, T., Yang, Y.-G., et al. (2011) · Nature Chemical Biology · doi:10.1038/nchembio.687 · Cited by 4,106 · see citing works
Self-citationSpecification of Cerebral Cortical Areas
Rakic, P. (1988) · Science · doi:10.1126/science.3291116 · Cited by 3,127 · see citing works
FMRP Stalls Ribosomal Translocation on mRNAs Linked to Synaptic Function and Autism
Darnell, J. C., Van Driesche, S. J., Zhang, C., Hung, K. Y. S., Mele, A., Fraser, C. E., Stone, E. F., Chen, C., Fak, J. J., Chi, S. W., et al. (2011) · Cell · doi:10.1016/j.cell.2011.06.013 · Cited by 2,072 · see citing works
Eberhart, D. (1996) · Human Molecular Genetics · doi:10.1093/hmg/5.8.1083 · Cited by 390 · see citing works
Dysregulation and restoration of translational homeostasis in fragile X syndrome
Richter, J. D., Bassell, G. J., & Klann, E. (2015) · Nature Reviews Neuroscience · doi:10.1038/nrn4001 · Cited by 275 · see citing works
Saffary, R., & Xie, Z. (2011) · The Journal of Neuroscience · doi:10.1523/jneurosci.4854-10.2011 · Cited by 103 · cited 1× · see citing works
“…loss of Fmr1 has been associated with abnormalities in cortical development and dendritic spine formation, which may contribute to aberrant learning and behavior in fragile X syndrome (Castrén et al., 2005; La Fata et al., 2014; Saffary and Xie, 2011; Shen et al., 2019; Tervonen et al., 2009).”
Aberrant differentiation of glutamatergic cells in neocortex of mouse model for fragile X syndrome.
Tervonen, T. A., Louhivuori, V., Sun, X., Hokkanen, M.-E., Kratochwil, C. F., Zebryk, P., Castrén, E., & Castrén, M. L. (2009) · Neurobiology of Disease · doi:10.1016/j.nbd.2008.10.010 · Cited by 82 · cited 2× · see citing works
“Consistent with our observations, alterations of layer-specific neuron migration and localization have been found in Fmr1KO mice (La Fata et al., 2014; Tervonen et al., 2009).”
Flagged first, then by citations
Research works printed but not linked: 43
- Ascano M Jr., Mukherjee N, Bandaru P, Miller JB, Nusbaum JD, Corcoran DL, Langlois C, Munschauer M, Dewell S, Hafner M, (2012). FMRP targets distinct mRNA sequence elements to regulate protein expression. Nature 492, 382– 386. 23235829 PMC3528815
- Bartolini G, Ciceri G, and Marín O (2013). Integration of GABAergic interneurons into cortical cell assemblies: lessons from embryos and adults. Neuron 79, 849– 864. 24012001
- Batista PJ, Molinie B, Wang J, Qu K, Zhang J, Li L, Bouley DM, Lujan E, Haddad B, Daneshvar K, (2014). m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells. Cell Stem Cell 15, 707– 719. 25456834 PMC4278749
- Castrén M, Tervonen T, Kärkkäinen V, Heinonen S, Castrén E, Larsson K, Bakker CE, Oostra BA, and Akerman K (2005). Altered differentiation of neural stem cells in fragile X syndrome. Proc. Natl. Acad. Sci. USA 102, 17834– 17839. 16314562 PMC1308923
- Chaudhry A, Noor A, Degagne B, Baker K, Bok LA, Brady AF, Chitayat D, Chung BH, Cytrynbaum C, Dyment D,; DDD Study (2015). Phenotypic spectrum associated with PTCHD1 deletions and truncating mutations includes intellectual disability and autism spectrum disorder. Clin. Genet 88, 224– 233. 25131214
- Chen J, Bardes EE, Aronow BJ, and Jegga AG (2009). ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res 37, W305– W311. 19465376 PMC2703978
- Dave RK, Ellis T, Toumpas MC, Robson JP, Julian E, Adolphe C, Bartlett PF, Cooper HM, Reynolds BA, and Wainwright BJ (2011). Sonic hedgehog and notch signaling can cooperate to regulate neurogenic divisions of neocortical progenitors. PLoS One 6, e14680. 21379383 PMC3040755
- Dominissini D, Moshitch-Moshkovitz S, Schwartz S, Salmon-Divon M, Ungar L, Osenberg S, Cesarkas K, Jacob-Hirsch J, Amariglio N, Kupiec M, (2012). Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature 485, 201– 206. 22575960
- Du H, Zhao Y, He J, Zhang Y, Xi H, Liu M, Ma J, and Wu L (2016). YTHDF2 destabilizes m(6)A-containing RNA through direct recruitment of the CCR4-NOT deadenylase complex. Nat. Commun 7, 12626. 27558897 PMC5007331
- Dutch-Belgian Fragile X Consortium (1994). Fmr1 knockout mice: a model to study fragile X mental retardation. Cell 78, 23– 33. 8033209
- Dwyer ND, Chen B, Chou SJ, Hippenmeyer S, Nguyen L, and Ghashghaei HT (2016). Neural Stem Cells to Cerebral Cortex: Emerging Mechanisms Regulating Progenitor Behavior and Productivity. J. Neurosci 36, 11394– 11401. 27911741 PMC5125206
- Edupuganti RR, Geiger S, Lindeboom RGH, Shi H, Hsu PJ, Lu Z, Wang SY, Baltissen MPA, Jansen PWTC, Rossa M, (2017). N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis. Nat. Struct. Mol. Biol 24, 870– 878. 28869609 PMC5725193
- Engel M, Eggert C, Kaplick PM, Eder M, Roh S, Tietze L, Namendorf C, Arloth J, Weber P, Rex-Haffner M, (2018). The Role of m(6)A/m-RNA Methylation in Stress Response Regulation. Neuron 99, 389– 403.e9. 30048615 PMC6069762
- Fu Y, Dominissini D, Rechavi G, and He C (2014). Gene expression regulation mediated through reversible m6A RNA methylation. Nat. Rev. Genet 15, 293– 306. 24662220
- Fustin JM, Doi M, Yamaguchi Y, Hida H, Nishimura S, Yoshida M, Isagawa T, Morioka MS, Kakeya H, Manabe I, and Okamura H (2013). RNA-methylation-dependent RNA processing controls the speed of the circadian clock. Cell 155, 793– 806. 24209618
- Geula S, Moshitch-Moshkovitz S, Dominissini D, Mansour AA, Kol N, Salmon-Divon M, Hershkovitz V, Peer E, Mor N, Manor YS, (2015). Stem cells. m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation. Science 347, 1002– 1006. 25569111
- Herwig R, Hardt C, Lienhard M, and Kamburov A (2016). Analyzing and interpreting genome data at the network level with ConsensusPathDB. Nat. Protoc 11, 1889– 1907. 27606777
- Hutten S, and Kehlenbach RH (2007). CRM1-mediated nuclear export: to the pore and beyond. Trends Cell Biol. 17, 193– 201. 17317185
- Ishibashi M, Ang SL, Shiota K, Nakanishi S, Kageyama R, and Guillemot F (1995). Targeted disruption of mammalian hairy and enhancer of split homolog-1 (HES-1) leads to up-regulation of neural helix-loop-helix factors, premature neurogenesis, and severe neural tube defects. Genes Dev. 9, 3136– 3148. 8543157
- Ke S, Pandya-Jones A, Saito Y, Fak JJ, Vågbø CB, Geula S, Hanna JH, Black DL, Darnell JE Jr., and Darnell RB (2017). m6A mRNA modifications are deposited in nascent pre-mRNA and are not required for splicing but do specify cytoplasmic turnover. Genes Dev. 31, 990– 1006. 28637692 PMC5495127
- Kim M, Bellini M, and Ceman S (2009). Fragile X mental retardation protein FMRP binds mRNAs in the nucleus. Mol. Cell. Biol 29, 214– 228. 18936162 PMC2612477
- Kong JH, Yang L, Dessaud E, Chuang K, Moore DM, Rohatgi R, Briscoe J, and Novitch BG (2015). Notch activity modulates the responsiveness of neural progenitors to sonic hedgehog signaling. Dev. Cell 33, 373– 387. 25936505 PMC4449290
- Koranda JL, Dore L, Shi H, Patel MJ, Vaasjo LO, Rao MN, Chen K, Lu Z, Yi Y, Chi W, (2018). Mettl14 Is Essential for Epi-transcriptomic Regulation of Striatal Function and Learning. Neuron 99, 283– 292.e5. 30056831 PMC6082022
- La Fata G, Gärtner A, Domínguez-Iturza N, Dresselaers T, Dawitz J, Poorthuis RB, Averna M, Himmelreich U, Meredith RM, Achsel T, (2014). FMRP regulates multipolar to bipolar transition affecting neuronal migration and cortical circuitry. Nat. Neurosci 17, 1693– 1700. 25402856
- Lin S, Choe J, Du P, Triboulet R, and Gregory RI (2016). The m(6)A Methyltransferase METTL3 Promotes Translation in Human Cancer Cells. Mol. Cell 62, 335– 345. 27117702 PMC4860043
- Liu J, Yue Y, Han D, Wang X, Fu Y, Zhang L, Jia G, Yu M, Lu Z, Deng X, (2014). A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation. Nat. Chem. Biol 10, 93– 95. 24316715 PMC3911877
- McConnell SK, and Kaznowski CE (1991). Cell cycle dependence of laminar determination in developing neocortex. Science 254, 282– 285. 1925583
- Meyer KD, Patil DP, Zhou J, Zinoviev A, Skabkin MA, Elemento O, Pestova TV, Qian SB, and Jaffrey SR (2015). 5′ UTR m(6)A Promotes Cap-Independent Translation. Cell 163, 999– 1010. 26593424 PMC4695625
- Noor A, Whibley A, Marshall CR, Gianakopoulos PJ, Piton A, Carson AR, Orlic-Milacic M, Lionel AC, Sato D, Pinto D,; Autism Genome Project Consortium (2010). Disruption at the PTCHD1 Locus on Xp22.11 in Autism spectrum disorder and intellectual disability. Sci. Transl. Med 2, 49ra68. PMC2987731 20844286
- Peer E, Rechavi G, and Dominissini D (2017). Epitranscriptomics: regulation of mRNA metabolism through modifications. Curr. Opin. Chem. Biol 41, 93– 98. 29125941
- Pilaz LJ, McMahon JJ, Miller EE, Lennox AL, Suzuki A, Salmon E, and Silver DL (2016). Prolonged Mitosis of Neural Progenitors Alters Cell Fate in the Developing Brain. Neuron 89, 83– 99. 26748089 PMC4706996
- Prasanth KV, Prasanth SG, Xuan Z, Hearn S, Freier SM, Bennett CF, Zhang MQ, and Spector DL (2005). Regulating gene expression through RNA nuclear retention. Cell 123, 249– 263. 16239143
- Roundtree IA, Luo GZ, Zhang Z, Wang X, Zhou T, Cui Y, Sha J, Huang X, Guerrero L, Xie P, (2017). YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs. eLife 6, e31311. 28984244 PMC5648532
- Shen M, Wang F, Li M, Sah N, Stockton ME, Tidei JJ, Gao Y, Korabelnikov T, Kannan S, Vevea JD, (2019). Reduced mitochondrial fusion and Huntingtin levels contribute to impaired dendritic maturation and behavioral deficits in Fmr1-mutant mice. Nat. Neurosci 22, 386– 400. 30742117 PMC6556892
- Solecki DJ, Model L, Gaetz J, Kapoor TM, and Hatten ME (2004). Par6alpha signaling controls glial-guided neuronal migration. Nat. Neurosci 7, 1195– 1203. 15475953
- Wang X, Zhao BS, Roundtree IA, Lu Z, Han D, Ma H, Weng X, Chen K, Shi H, and He C (2015). N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency. Cell 161, 1388– 1399. 26046440 PMC4825696
- Wang Y, Li Y, Yue M, Wang J, Kumar S, Wechsler-Reya RJ, Zhang Z, Ogawa Y, Kellis M, Duester G, and Zhao JC (2018). N6-methyladenosine RNA modification regulates embryonic neural stem cell self-renewal through histone modifications. Nat. Neurosci 21, 195– 206. 29335608 PMC6317335
- Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, Franz M, Grouios C, Kazi F, Lopes CT, (2010). TheGeneMANIA production server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Res 38, W214– W220. 20576703 PMC2896186
- Wegener M, and Muller-McNicoll M (2018). Nuclear retention of mRNAs - quality control, gene regulation and human disease. Semin. Cell Dev. Biol 79, 131– 142. 29102717
- Wei J, Liu F, Lu Z, Fei Q, Ai Y, He PC, Shi H, Cui X, Su R, Klungland A, (2018). Differential m(6)A, m(6)Am, and m(1)A Demethylation Mediated by FTO in the Cell Nucleus and Cytoplasm. Mol. Cell 71, 973– 985.e5. 30197295 PMC6151148
- Xu C, Wang X, Liu K, Roundtree IA, Tempel W, Li Y, Lu Z, He C, and Min J (2014). Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain. Nat. Chem. Biol 10, 927– 929. 25242552
- Yoon KJ, Ringeling FR, Vissers C, Jacob F, Pokrass M, Jimenez-Cyrus Q, Su Y, Kim NS, Zhu Y, Zheng L, (2017). Temporal Control of Mammalian Cortical Neurogenesis by m(6)A Methylation. Cell 171, 877– 889.e17. 28965759 PMC5679435
- Zhang F, Kang Y, Wang M, Li Y, Xu T, Yang W, Song H, Wu H, Shu Q, and Jin P (2018). Fragile X mental retardation protein modulates the stability of its m6A-marked messenger RNA targets. Hum. Mol. Genet 27, 3936– 3950. 30107516 PMC6216232
Cited by
Sorted by citations
Genome-wide CRISPRi/a screens in human neurons link lysosomal failure to ferroptosis
Tian, R., Abarientos, A., Hong, J., Hashemi, S. H., Yan, R., Dräger, N., Leng, K., Nalls, M. A., Singleton, A. B., Xu, K., et al. (2021) · Nature Neuroscience · doi:10.1038/s41593-021-00862-0 · Cited by 414 · see citing works
The m6A epitranscriptome: transcriptome plasticity in brain development and function
Livneh, I., Moshitch-Moshkovitz, S., Amariglio, N., Rechavi, G., & Dominissini, D. (2020) · Nature Reviews Neuroscience · doi:10.1038/s41583-019-0244-z · Cited by 330 · see citing works
Huang, J., Sun, W., Wang, Z., Lv, C., Zhang, T., Zhang, D., Dong, W., Shao, L., He, L., Ji, X., et al. (2022) · Journal of Experimental & Clinical Cancer Research · doi:10.1186/s13046-022-02254-z · Cited by 198 · see citing works
Genome-wide CRISPRi/a screens in human neurons link lysosomal failure to ferroptosis
Tian, R., Abarientos, A., Hong, J., Hashemi, S. H., Yan, R., Dräger, N., Leng, K., Nalls, M. A., Singleton, A. B., Xu, K., et al. (2020) · doi:10.1101/2020.06.27.175679 · Cited by 414 · see citing works
Wu, P.-F., Han, Q.-Q., Chen, F.-F., Shen, T.-T., Li, Y.-H., Cao, Y., Chen, J.-G., & Wang, F. (2021) · Neurobiology of Stress · doi:10.1016/j.ynstr.2021.100390 · Cited by 32 · see citing works
Astrocytes in fragile X syndrome
Talvio, K., & Castrén, M. L. (2024) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2023.1322541 · Cited by 8 · see citing works
- Authors
- Edens, B. M., Vissers, C., Su, J., Arumugam, S., Xu, Z., Shi, H., Miller, N., Rojas Ringeling, F., Ming, G.-L., He, C., Song, H., & Ma, Y. C.
- Affiliations
- Northwestern University (US)
- Johns Hopkins University (US)
- University of Pennsylvania (US)
- University of Chicago (US)
- Corresponding author
- Song, Hongjun
- Ma, Yongchao C.
- ORCID
- Venue
- Cell Reports
- Publisher
- Elsevier BV
- Published
- 2019-07
- Volume
- 28
- Issue
- 4
- Pages
- 845-854.e5
- ISSN
- 2211-1247 (ISSN-L)
- PMC
- PMC6687293
- OpenAlex
- W2962876356
- Cited by
- 297
- References
- 9
- Citations by year
- 2026: 16 · 2025: 33 · 2024: 37 · 2023: 70 · 2022: 56 · 2021: 50 · 2020: 29 · 2019: 6
- FWCI
- 12.16
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Cell Reports (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion, cc-by-nc-nd)
- Funders
- Cure SMA
- Hartwell Foundation
- National Institutes of Health
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA modifications and cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Keywords
- FMRP, m6A RNA methylation, mRNA export, neuronal differentiation, neural progenitor cells, METTL14, CRM1, fragile X syndrome, Fmr1 knockout mice, RNA methylation, cell cycle progression
- MeSH terms
- Exportin 1 Protein, Adenosine, Animals, Animals, Newborn, Cell Cycle, Cell Differentiation, Cerebral Cortex, Neurons, RNA, Messenger, Gene Deletion, Receptors, Cytoplasmic and Nuclear, Mice, Knockout, Active Transport, Cell Nucleus, Karyopherins, RNA Transport, Cell Proliferation, Fragile X Mental Retardation Protein, Fragile X Messenger Ribonucleoprotein 1, Neural Stem Cells
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review