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Cited by 2,357

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Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

Open access
Durand, Neva C., Robinson, James T., Shamim, Muhammad S., Machol, Ido, Mesirov, Jill P., Lander, Eric S., Aiden, Erez Lieberman·2016·Cell Systems
DOI 10.1016/j.cels.2015.07.012
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Abstract

Hi-C experiments study how genomes fold in 3D, generating contact maps containing features as small as 20 bp and as large as 200 Mb. Here we introduce Juicebox, a tool for exploring Hi-C and other contact map data. Juicebox allows users to zoom in and out of Hi-C maps interactively, just as a user of Google Earth might zoom in and out of a geographic map. Maps can be compared to one another, or to 1D tracks or 2D feature sets.

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Metadata

Authors
Durand, N. C., Robinson, J. T., Shamim, M. S., Machol, I., Mesirov, J. P., Lander, E. S., & Aiden, E. L.
Venue
Cell Systems
Publisher
Elsevier BV
Published
2016-07
Volume
3
Issue
1
Pages
99-101
ISSN
2405-4712 (ISSN-L)
DOI
10.1016/j.cels.2015.07.012
OpenAlex
W2493763501
Cited by
2,357
References
0
FWCI
33.71
Type
journal article
Language
en
Open access
hybrid

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CoChat. (2026). Citation check: Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom. https://app.cochat.ai/papers/10.1016/j.cels.2015.07.012
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Durand, N. C., Robinson, J. T., Shamim, M. S., Machol, I., Mesirov, J. P., Lander, E. S., & Aiden, E. L. (2016). Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom. Cell Systems. https://doi.org/10.1016/j.cels.2015.07.012

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Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.