Acid-Tolerant Monomeric GFP from Olindias formosa
Open accessAbstract
The fluorescent protein (FP) color palette has greatly contributed to the visualization of molecular and cellular processes. However, most FPs lose fluorescence at a pH lower than their neutral pK a (∼6), and this has hampered their application in acidic organelles (pH ∼4.5-6.0). Currently, several cyan- and red-colored acid-tolerant FPs are available; however, there are few reports of acid-tolerant green FPs (GFPs) that are practically applicable to bioimaging. Here, we developed the acid-tolerant monomeric GFP "Gamillus" from the jellyfish Olindias formosa, with excellent brightness, maturation speed, and photostability. Results from X-ray crystallography and point mutagenesis suggest that across a broad pH range the acid tolerance is attributed to stabilization of deprotonation in the chromophore phenyl ring by forming a unique trans configuration. We demonstrate that Gamillus can serve as a molecular tag suitable for imaging in acidic organelles through autophagy-mediated molecular tracking to lysosomes.
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SHIP1's inhibition of TREM2 signaling has been suggested as one of the mechanisms by which SHIP1 regulates phagocytosis.
“SHIP1’s inhibition of TREM2 signaling has been suggested as one of the mechanisms by which SHIP1 regulates phagocytosis54,55.”
From INPP5D/SHIP1 regulates endo-lysosomal function and cargo-selective phagocytosis in human microglia (2025) · cites this paper as [54]
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Kimura, S., Noda, T., & Yoshimori, T. (2007) · Autophagy · doi:10.4161/auto.4451 · Cited by 2,278 · see citing works
Lysosomal acidification mechanisms
Mindell, J. A. (2012) · Annual Review of Physiology · doi:10.1146/annurev-physiol-012110-142317 · Cited by 1,258 · see citing works
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Teter, O. M., McQuade, A., Hagan, V., Liang, W., Dräger, N. M., Sattler, S. M., Holmes, B. B., Castillo, V. C., Papakis, V., Leng, K., et al. (2025) · Molecular Psychiatry · doi:10.1038/s41380-025-02997-z · Cited by 38 · see citing works
INPP5D/SHIP1 regulates endo-lysosomal function and cargo-selective phagocytosis in human microglia
Terzioglu, G., Karp, E. S., Heuer, S. E., Chadarevian, J. P., Ahsan, F. M., Haage, V. C., Davtyan, H., Fogo, G. M., Curle, A. J., Ashour, N., et al. (2025) · doi:10.1101/2025.10.27.684632 · Cited by 3 · see citing works
- Authors
- Shinoda, H., Ma, Y., Nakashima, R., Sakurai, K., Matsuda, T., & Nagai, T.
- Affiliations
- The University of Osaka (JP)
- The Institute of Scientific and Industrial Research, The University of Osaka (JP)
- Corresponding author
- Nagai, Takeharu
- Venue
- Cell Chemical Biology
- Publisher
- Elsevier BV
- Published
- 2018-03
- Volume
- 25
- Issue
- 3
- Pages
- 330-338.e7
- ISSN
- 2451-9448 (ISSN-L)
- 2451-9456
- OpenAlex
- W2781252417
- Cited by
- 93
- References
- 2
- Citations by year
- 2026: 8 · 2025: 18 · 2024: 9 · 2023: 11 · 2022: 14 · 2021: 13 · 2020: 6 · 2019: 7 · 2018: 7
- FWCI
- 3.21
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell chemical biology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- CREST, JST (JPMJCR15N3, JPMJCR12M6)
- Health Labor Sciences Research
- JSPS (18687014)
- MEXT (JP23115003, JP16H06487)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biophysics › Advanced Fluorescence Microscopy Techniques
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › bioluminescence and chemiluminescence research
- Physical Sciences › Materials Science › Materials Chemistry › Luminescence and Fluorescent Materials
- Keywords
- chromophore deprotonation, trans configuration, pH tolerance, acidic organelles, lysosome imaging, molecular tagging, photostability
- MeSH terms
- Animals, Hydrogen-Ion Concentration, Lysosomes, Recombinant Proteins, Solubility, Spectrometry, Fluorescence, Protein Structure, Tertiary, Crystallography, X-Ray, Hydrozoa, Green Fluorescent Proteins
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