Prior dietary practices and connections to a human gut microbial metacommunity alter responses to diet interventions

Griffin, Nicholas W., Ahern, Philip P., Cheng, Jiye, Heath, Andrew C., Ilkayeva, Olga, Newgard, Christopher B., Fontana, Luigi, Gordon, Jeffrey I.·2017·Cell Host & Microbe
DOI 10.1016/j.chom.2016.12.006

Cited by (164)

Items 101–164 of 164

  1. Ecology and Evolution of the Social Microbiome
    Reena Debray, Jenny Tung, Elizabeth A. Archie · 2024 · Annual Review of Ecology Evolution and Systematics
  2. Long-term fasting and its influence on inflammatory biomarkers: A comprehensive scoping review
    Isabella De Ciutiis, Shadia Djakovic, María Lastra Cagigas, Andrius Masedunskas, Lee Smith, Claudio Franceschi, Luigi Fontana · 2025 · Ageing Research Reviews
  3. Colonic microbiota profile characterization of the responsiveness to dietary fibre treatment in hypercholesterolemia
    Granado-Serrano, Ana Belen, Martín-Garí, Meritxell, Sánchez, Virginia, Riart Solans, Marissa, Lafarga Giribets, Antonia, Berdún, Rebeca, Vilaprinyó, Ester, Portero-Otín, Manuel, Serrano, José C. E. · 2022 · Nutrients
  4. The Influence of the Probiotics, Ketogenic Diets, and Gut Microbiota on Epilepsy and Epileptic Models: A Comprehensive Review
    Parmida Shirzadi, Parisa Farokh, Sima Osouli Meinagh, Ghazal Izadi-Jorshari, Bardia Hajikarimloo, Ghazaleh Mohammadi, Siavash Parvardeh, Marjan Nassiri‐Asl · 2025 · Molecular Neurobiology
  5. Effects of lipopolysaccharide on T lymphocyte cell subsets and cytokine secretion in mesenteric lymph nodes of mice: Histological and molecular study
    Chao Li, Hongchao Zhou, Yi-Lin Nie, Baoyu Zhao, Chenchen Wu · 2019 · Environmental Toxicology and Pharmacology
  6. Exclusive Enteral Nutrition Plus Immediate vs. Delayed Washed Microbiota Transplantation in Crohn's Disease With Malnutrition: A Randomized Pilot Study
    Liyuan Xiang, Yan Yu, Xiao Ding, Hui Zhang, Quan Wen, Bota Cui, Faming Zhang · 2021 · Frontiers in Medicine
  7. Effect of feed restriction on the intestinal microbial community structure of growing ducks
    Junpeng Li, Qifan Wu, Shengchao Ma, Jianmei Wang, Bin Wei, Xi Yang, Chunchun Han, Liang Li, Hua He, Hehe Liu · 2021 · Archives of Microbiology
  8. The Dominating Role of Genetic Background in Shaping Gut Microbiota of Honeybee Queen Over Environmental Factors
    Jiandong Yang, Yun Zhong, Liqun Xu, Bo Zeng, Kang Lai, Mingxian Yang, Diyan Li, Ye Zhao, Mingwang Zhang, Debing Li · 2021 · Frontiers in Microbiology
  9. Post-Dieting Weight Gain: The role of Persistent Microbiome Changes
    Christoph A. Thaiss, Hagit Shapiro, Eran Elinav · 2017 · Future Microbiology
  10. In vitro gut microbiome response to carbohydrate supplementation is acutely affected by a sudden change in diet
    Ida Gisela Pantoja-Feliciano, James Philip Karl, Matthew Perisin, Laurel A. Doherty, Holly L. McClung, Nicholes J. Armstrong, Rebecca L. Renberg, Kenneth Racicot, Tobyn A. Branck, Steve Arcidiacono et al. · 2023 · BMC Microbiology
  11. Achieving pan-microbiome biological insights via the dbBact knowledge base
    Amnon Amir, Eitan Ozel, Yael Haberman, Noam Shental · 2023 · Nucleic Acids Research
  12. FoodRepo: An Open Food Repository of Barcoded Food Products
    Gianrocco Lazzari, Yannis Jaquet, Djilani Kebaili, Laura Symul, Marcel Salathé · 2018 · Frontiers in Nutrition
  13. Effects of the prebiotic inulin‐type fructans on post‐antibiotic reconstitution of the gut microbiome
    Changli Tao, W. Zeng, Qing Zhang, Gongliang Liu, Fang Wu, Han Shen, Weina Zhang, Bo Huang, Hongwei Shao · 2020 · Journal of Applied Microbiology
  14. Dietary and pharmacological energy restriction and exercise for healthspan extension
    María Lastra Cagigas, Isabella De Ciutiis, Andrius Masedunskas, Luigi Fontana · 2025 · Trends in Endocrinology and Metabolism
  15. Effects of Ethanol-Precipitated Argan Press Cake on the Caecal Microbiome of Mice Fed a High-Sucrose Diet
    Minori Goto, Takashi Kuda, Ayane Shikano, Hajime Takahashi, Bon Kimura · 2021 · Waste and Biomass Valorization
  16. Impact of Lactobacillus plantarum ST-III on the composition of infant gut microbiota and its potential synergism with breast milk and infant formula as revealed by an in vitro study
    Minghui Yan, Wanyi Chen, Nan Li, Jing Ren, Chen Chen, Chunping You, Zhenmin Liu · 2018 · International Dairy Journal
  17. Earth Dreams: Reimagining ARPA for Health of People, Places and Planet
    Alan C Logan, Brian Berman, Susan L. Prescott · 2021 · International Journal of Environmental Research and Public Health
  18. Short- and long-term effects of very low- and low-calorie ketogenic diets on metabolism and cardiometabolic risk factors: a narrative review
    Gianluigi Gaspa, Anda Mihaela Naciu, Claudia Di Rosa, Greta Lattanzi, Ivan Beato, Vanessa MICHELI, Clara TURRIZIANI, Yeganeh Manon Khazrai, Roberto CESAREO · 2022 · Minerva Endocrinology
  19. Personalized Wellness Past and Future
    Mitch Kanter, Ashley Desrosiers · 2019 · Nutrition Today
  20. Intermittent fasting - a potential approach to modulate the gut microbiota in humans? A systematic review
    Kate Llewellyn-Waters, Mohammad M. H. Abdullah · 2021 · Nutrition and Healthy Aging
  21. When a Calorie Is Not a Calorie: Metabolic and Molecular Effects of Intermittent Fasting in Humans; Exploratory Outcomes of a Randomized Clinical Trial
    Luigi Fontana, Valeria Tosti, Ruteja A. Barve, Beatrice Bertozzi, Nicola Veronese, Francesco Spelta, Edda Cava, Mark P. Mattson, Laura M. Piccio, Dayna S. Early et al. · 2023
  22. Underlying mechanisms of ketotherapy in heart failure: current evidence for clinical implementations
    Kun Liu, Yang Yang, Jing-Hua Yang · 2024 · Frontiers in Pharmacology
  23. Deconstruct the link between gut microbiota and neurological diseases: application of Mendelian randomization analysis
    Jingqiu Li, Xinyang Hu, Xinyu Tao, Yuming Li, Wan Jiang, Mingtao Zhao, Zhehui Ma, Bangjie Chen, Shuyan Sheng, Jiaye Tong et al. · 2025 · Frontiers in Cellular and Infection Microbiology
  24. Ecological Sensing Through Taste and Chemosensation Mediates Inflammation: A Biological Anthropological Approach.
    C. Giuliani, C. Franceschi, D. Luiselli, P. Garagnani, S. Ulijaszek · 2020 · Advances in Nutrition
  25. Metformin
    Kunal Maniar, Vandana Singh, Deepak Kumar, Amal Moideen, Rajasri Bhattacharyya, Dibyajyoti Banerjee · 2019 · Elsevier eBooks
  26. Consistent alterations of human fecal microbes after transplanted to germ-free mice
    Yanze Li, Wenming Cao, Na Gao, Xing‐Ming Zhao, Wei‐Hua Chen · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  27. How Could Ethnicity-Associated Microbiomes Contribute to Personalized Therapies?
    Andrew Brooks · 2019 · Future Microbiology
  28. A novel taurine-respiring murine gut bacterium contributes to colonization resistance against enteropathogens
    Huimin Ye, Sabrina Borusak, Claudia Eberl, Buck T. Hanson, Benjamin Zwirzitz, Craig William Herbold, Petra Pjevac, Bela Hausmann, Bärbel Stecher, David Schleheck et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  29. The interconnection between dietary fibre, gut microbiome and psychological well-being
    Hwei Min Ng, Catherine Louisa Wall, Simone Birgit Bayer, Richard Blair Gearry, Nicole Clemence Roy · 2025 · Proceedings of The Nutrition Society
  30. Cardiometabolic and molecular adaptations to 6-month intermittent fasting in middle-aged men and women with overweight: secondary outcomes of a randomized controlled trial
    Ruteja A. Barve, Nicola Veronese, Beatrice Bertozzi, Valeria Tosti, María Lastra Cagigas, Francesco Spelta, Edda Cava, Laura M. Piccio, Dayna S. Early, Richard D. Head et al. · 2025 · Nature Communications
  31. Microbiota Composition and Diversity in Weight Loss Population After the Intake of IQP-AE-103 in a Double-Blind, Randomized, Placebo-Controlled Study
    Li Vern Peng, Jennifer Cooper, Patricia de Moraes Costa, Pee-Win Chong · 2022 · Frontiers in Nutrition
  32. Eat Well, or Get Roommates Who Do
    Lee M. Kaplan, Joseph Brancale · 2017 · Cell Host & Microbe
  33. Dietary Effects, Age, and Urban–Rural Dynamics in Shaping Gut Microbiota of Elderly Vietnamese: A Cross-Sectional Study
    Adel Hamdi, Le Van Truong, Vu Thi Hien, Phuong Anh Nguyen, Hoang Thi Bach Duong, Charmaine Lloyd, Rajaraman D. Eri, Dragana Stanley, Đồng Văn Quyền, Thi Thu Hao Van · 2025 · Microorganisms
  34. The Role of Milk Nutrition and Ketogenic Diet in Epileptic Disorders
    Maria Giovanna Ciliberti, Antonella Santillo, Rita Polito, Giovanni Messina, Marzia Albenzio · 2022 · Epilepsy
  35. SSAT State-of-the-Art Conference: Advancements in the Microbiome
    Miquell O. Miller, Purna Kashyap, Sarah Becker, Ryan Michael Thomas, Richard A. Hodin, George Miller, Mautin Barry-Hundeyin, Smruti Pushalkar, Deirdre Jill Cohen, Deepak B. Saxena et al. · 2020 · Journal of Gastrointestinal Surgery
  36. Food-gut microbiota interactions
    K. Berding, D. Kaulmann, J. Cryan · 2022 · Probiotics
  37. Stronger connectivity of the resident gut microbiome lends resistance to invading bacteria
    Cristina M. Herren, Michael Baym · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  38. Effect of Artificial Sweetener Aspartame on Gut Microbiota - A Narrative Review
    Pardeep Kaur Sandhu · 2021 · International Journal for Research in Applied Science and Engineering Technology
  39. Factors influencing microbial growth in the human oral cavity
    R. Khan, R. Sarmah · 2023 · Reviews and Research in Medical Microbiology
  40. Gut microbiota dysbiosis–induced chronic inflammation as a driver of atherosclerosis: cellular crosstalk and host–microbe interactions
    Song Da, Huize Gao, Tianqi Wang, Qian Wei, Aidong Liu, Jixiang Ren · 2026 · Frontiers in Cellular and Infection Microbiology
  41. Reshaping of the fecal proteome and metaproteome in obese patients 2 years after bariatric surgery
    Alessandro Tanca, Laura De Diego, Maria Antonietta Deledda, Flavio De Maio, Cristian Eugeniu Boru, Mario Musella, Marco Raffaelli, Gianfranco Silecchia, Giovanni Delogu, Sergio Uzzau · 2026 · mSystems
  42. Gut microbiota and acute kidney injury: immunological crosstalk link
    Asmaa Mohamed Mahmoud Ali, Liang Wu, Sameh Samir Ali · 2023 · International Urology and Nephrology
  43. Precision Medicine
    Joel Faintuch, Jacob J. Faintuch · 2019 · Elsevier eBooks
  44. Social microbiome transmission predicts microbial specialization and host lifespan in a wild primate
    Reena Debray, Caroline C. Dickson, Shasta E. Webb, Pamela Ferretti, Alex Meloimet, Jack Gilbert, Susan C. Alberts, Ran Blekhman, Elizabeth A. Archie, Jenny Tung · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  45. Impact of the maternal diet and the intervention with fructooligosaccharide on thehuman milk microbiota
    Marina Padilha · 2018
  46. The influence of the gut microbiota on influenza vaccine-induced immunity
    Anna Mooney · 2018
  47. Microbiome and Microbiota in Rheumatic Disease
    Malavikalakshmi Attur, José U. Scher · 2019 · Springer eBooks
  48. Nutritional Regulation of the Microbiota - Can One Meal Change a Trillion Lives?
    S. Raj J. Trikha, Scott D. Wrigley, Christopher L. Gentile, Tiffany L. Weir · 2019 · Elsevier eBooks
  49. Role of Gut Microbiome on Metabolic Disorders
    Ifeanyi Onyema Oshim, Nneka Regina Agbakoba, Evelyn Ukamaka Urama, Oluwayemisi Odeyemi, Nkechi Augustina Olise, Godsplan Uchechukwu John · 2020 · Journal of Advances in Medical and Pharmaceutical Sciences
  50. A low dose of beryllium exposure influences gut microbiota and promotes metabolic syndrome.
    Kwang Hyun, Jung‐Seok Yang, Dae‐Geun Song, Kye-Yoon Yoon, Erdenedolgor Erdene-Ochir, Kyung‐A Kim, Hyo Shin Yoon, Hyun Ju You, Mi Young Lim, Boram Seo et al. · 2020
  51. Effects of Therapy on Host-Microbe Interactions in Pediatric Inflammatory Bowel Diseases
    Stephanie Dijk · 2020 · ERA: Education and Research Archive (University of Alberta)
  52. The effects of bariatric surgery procedures on the gut microbiota, features of genetically mediated predisposition to obesity, forecasting algorithms for surgical treatment outcomes. Literature review
    P. A. Kobzar · 2022 · General Surgery
  53. Review Article: Gut Microbiota as Biological Regulators for Human Health
    Gehan A. Ghoniem, M. Rabie, Fify R. Anees, S A Gabr · 2022 · Journal of Food and Dairy Sciences
  54. Survey of the Intestinal Bacterial Compositions of Three Sympatric Passeriformes Species
    Hisako Masuda, Fattaneh Nejad Zarabadi, Lina B. Rifai · 2022 · Journal of Advances in Microbiology
  55. Gut microbiome interventions in regenerative medicine
    Heloísa Balan Assalin, Andrey Santos, Alexandro Barbosa de Souza, Reinaldo Gaspar Bastos · 2023 · Elsevier eBooks
  56. Food as Medicine in Hidradenitis Suppurativa: A Review of Dietary Effects on Hidradenitis Suppurativa Pathogenesis
    Thao Lam, Fiona S. Gruzmark, Jillian Ondreyka, Joi Lenczowski, Tamia A. Harris-Tryon, John W. Frew, Hadar A. Lev‐Tov · 2025 · Integrative and Complementary Therapies
  57. Additional file 2 of In vitro gut microbiome response to carbohydrate supplementation is acutely affected by a sudden change in diet
    Ida Gisela Pantoja-Feliciano, Karl, J. Philip, Matthew Perisin, Laurel A. Doherty, Holly L. McClung, Nicholes J. Armstrong, Rebecca L. Renberg, Kenneth Racicot, Tobyn A. Branck, Steve Arcidiacono et al. · 2023 · Figshare
  58. Additional file 1 of In vitro gut microbiome response to carbohydrate supplementation is acutely affected by a sudden change in diet
    Ida Gisela Pantoja-Feliciano, Karl, J. Philip, Matthew Perisin, Laurel A. Doherty, Holly L. McClung, Nicholes J. Armstrong, Rebecca L. Renberg, Kenneth Racicot, Tobyn A. Branck, Steve Arcidiacono et al. · 2023 · Figshare
  59. Gut trialogue: How diet influences mucosal immune system-microbiota interactions
    Quentin Lamy-Besnier, Seong-eun G. Kim, Thais Vilela Rodrigues, Andrew T. Gewirtz, Benoît Chassaing · 2026 · Mucosal Immunology
  60. Effects of a comprehensive management mode for overweight/obesity based on mobile internet technology and traditional Chinese medicine constitution theory: a randomized controlled trial
    Xin Chen, Junyi Duan, Ruxin Duan, Yu Wang, Hua Jiang · 2026 · Frontiers in Nutrition
  61. Influence of Different Degrees of Food Restriction on Immune Function and Gut Microbiota in Brandt’s Voles
    Yunqi Liu, Deli Xu · 2026 · Microorganisms
  62. Weight loss during intermittent fasting, not Mediterranean diet quality alone, is associated with lower inflammation: A randomized controlled trial
    Moritz V. Warmbrunn, Valeria Tosti, Raaj Kishore Biswas, Beatrice Bertozzi, María Lastra Cagigas, Nicola Veronese, Francesco Spelta, Laura M. Piccio, Richard D. Head, Richard Rosario Rodrigues et al. · 2026 · Cell Metabolism
  63. Peppermint oil exhibits antispasmodic and anti-inflammatory properties and alters gut microbial community composition and gas production in vitro
    Christian Buettner, Philipp Peterburs, Anja Schulz-Kuhnt, Lars Herrmann, Michael Soeberdt, Christoph Abels · 2026 · Frontiers in Pharmacology
  64. Data from: The association between salivary amylase gene copy number and enzyme activity with type 2 diabetes status.
    Angela C. Poole · 2025 · Zenodo (CERN European Organization for Nuclear Research)