The DOI matches its Crossref record; 35 of the 35 references it cites were found in a registry or an index.
Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life
Open accessAbstract
Bacterial community acquisition in the infant gut impacts immune education and disease susceptibility. We compared bacterial strains across and within families in a prospective birth cohort of 44 infants and their mothers, sampled longitudinally in the first months of each child's life. We identified mother-to-child bacterial transmission events and describe the incidence of family-specific antibiotic resistance genes. We observed two inheritance patterns across multiple species, where often the mother's dominant strain is transmitted to the child, but occasionally her secondary strains colonize the infant gut. In families where the secondary strain of B. uniformis was inherited, a starch utilization gene cluster that was absent in the mother's dominant strain was identified in the child, suggesting the selective advantage of a mother's secondary strain in the infant gut. Our findings reveal mother-to-child bacterial transmission events at high resolution and give insights into early colonization of the infant gut.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“Although it is unlikely that infants acquire many of such species directly from food consumption since maternal transmission is the most probable route of acquisition, 103-105”
From Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. (2024) · cites this paper as [103]
Experimental — accuracy not yet measuredIn the citing paper
“that have been found to be highly transmitted from mother to child in several studies10,15,16,17,41 and that are also present but not shared in pairs from non-westernized populations (Figure 2C).”
From Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population (2023) · cites this paper as [17]
In the citing paper
“While Escherichia coli and Bifidobacterium spp. are the most shared within the European pairs, as previously described,10,15,16,17,41”
From Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population (2023) · cites this paper as [17]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
Fast gapped-read alignment with Bowtie 2
Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400
Human gut microbiome viewed across age and geography
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815
The carbohydrate-active enzymes database (CAZy) in 2013
Lombard, V., Ramulu, H. G., Drula, É., Coutinho, P. M., & Henrissat, B. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt1178 · Cited by 6,452
The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic T reg Cell Homeostasis
Smith, P. M., Howitt, M. R., Panikov, N., Michaud, M., Gallini, C. A., Bohlooly-Y, M., Glickman, J. N., & Garrett, W. S. (2013) · Science · doi:10.1126/science.1241165 · Cited by 5,413
Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., & Knight, R. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002601107 · Cited by 4,774
Host-gut microbiota metabolic interactions
Nicholson, J. K., Holmes, E., Kinross, J., Burcelin, R., Gibson, G., Jia, W., & Pettersson, S. (2012) · Science · doi:10.1126/science.1223813 · Cited by 4,760
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
Ivanov, I. I., Atarashi, K., Manel, N., Brodie, E. L., Shima, T., Karaoz, U., Wei, D., Goldfarb, K. C., Santee, C. A., Lynch, S. V., et al. (2009) · Cell · doi:10.1016/j.cell.2009.09.033 · Cited by 4,554
Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life
Bäckhed, F., Roswall, J., Peng, Y., Feng, Q., Jia, H., Kovatcheva-Datchary, P., Li, Y., Xia, Y., Xie, H., Zhong, H., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.04.004 · Cited by 3,315
Succession of microbial consortia in the developing infant gut microbiome
Koenig, J. E., Spor, A., Scalfone, N., Fricker, A. D., Stombaugh, J., Knight, R., Angenent, L. T., & Ley, R. E. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000081107 · Cited by 2,540
Flagged first, then by citations
Cited by
Sorted by citations
Items 301–400 of 472
An integrated strain-level analytic pipeline utilizing longitudinal metagenomic data
Zhou, B., Wang, C., Putzel, G., Hu, J., Liu, M., Wu, F., Chen, Y., Pironti, A., & Li, H. (2024) · Microbiology Spectrum · doi:10.1128/spectrum.01431-24 · Cited by 6
Zhao, L., Chen, W., Ge, Y., Lv, X., Wang, Y., Yu, H., Liu, Y., Wu, D., Jiao, N., Wu, Y., et al. (2021) · Microbiology Spectrum · doi:10.1128/spectrum.00872-21 · Cited by 6
Tamarelle, J., Creze, M. M., Savathdy, V., Phonekeo, S., Wallenborn, J. T., Siengsounthone, L., Fink, G., Odermatt, P., Kounnavong, S., Sayasone, S., et al. (2023) · Frontiers in Nutrition · doi:10.3389/fnut.2023.1111478 · Cited by 6
Microbiota-associated mechanisms underlying sexual dimorphism in hypertension
Dasinger, J. H., Joe, B., & Abais‐Battad, J. M. (2023) · Microbiota and Host · doi:10.1530/mah-23-0016 · Cited by 6
Developmental Patterns of Fecal Bile Acids in Healthy Neonates and Children
Xiong, J., Hu, H., Xu, C., Yin, J., Liu, M., Zhang, L., Duan, Y., & Huang, Y. (2021) · Medical Science Monitor · doi:10.12659/msm.928214 · Cited by 6
Verticle transmission of unique bacterial strains from mother to infant via consuming natural kefir
Tunay, R. T., & Taş, T. K. (2021) · International Dairy Journal · doi:10.1016/j.idairyj.2021.105251 · Cited by 6
Bruijning, M., Henry, L. P., Forsberg, S. K. G., Metcalf, C. J. E., & Ayroles, J. F. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.09.02.280040 · Cited by 6
SynTracker: a synteny based tool for tracking microbial strainsPreprint
Enav, H., & Ley, R. E. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.10.06.463341 · Cited by 6
García-Bayona, L., Said, N., Coyne, M. J., Flores, K., Elmekki, N. M., Sheahan, M. L., Gutiérrez-Camacho, A., Hutt, K., Yildiz, F. H., Kovács, Á. T., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.04.29.590671 · Cited by 5
The nasal microbiome in early infancy is primarily shaped by the maternal nasal microbiome
Quinn, B. E., Rodríguez, J. A. R., Sam, E. K., Duliman, J., Denn, E., Lee, S., Shan, L., Kuti, C., Nyann, B. I., Rosario-Matos, N., et al. (2025) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2025.05.004 · Cited by 5
Wang, X., Zhang, G., Jiang, H., Sun, J., & Mao, X. (2025) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.5c08643 · Cited by 5
Tonnelé, H., Chen, D., Morillo, F., Garcia-Calleja, J., Chitre, A. S., Johnson, B. B., Sanches, T. M., Cheng, R., Bonder, M. J., González, A., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-66105-z · Cited by 9
Maternal influences on infant gut microbiome and health
Sinha, T., Brushett, S., Fernández-Pato, A., Garmaeva, S., Andreu‐Sánchez, S., Spreckels, J. E., Mallon, C. A., Kuzub, N., Gois, M. F. B., Wu, J., et al. (2026) · Nature · doi:10.1038/s41586-026-10922-9 · Cited by 11
Miyoshi, J., & Hisamatsu, T. (2024) · Clinical Journal of Gastroenterology · doi:10.1007/s12328-024-02088-6 · Cited by 5
Gut Microbes: The Gut Brain Connection
Lynch, C. M. K., O’Riordan, K. J., Clarke, G. A., & Cryan, J. F. (2023) · Springer eBooks · doi:10.1007/978-3-031-46712-7_4 · Cited by 5
The infant gut microbiota as the cornerstone for future gastrointestinal health
Tarracchini, C., Milani, C., Lugli, G. A., Mancabelli, L., Turroni, F., van Sinderen, D., & Ventura, M. (2024) · Advances in applied microbiology · doi:10.1016/bs.aambs.2024.02.001 · Cited by 5
The Intestinal Microbiome in Humans: Its Role for a Healthy Life and in the Onset of Diseases
Gașpar, B. S., Profir, M., Roşu, O. A., Ionescu, R. F., & Creţoiu, S. M. (2024) · Physiology · doi:10.5772/intechopen.113719 · Cited by 5
Beyond personal space: Unveiling the transmission pattern of the human gut and oral microbiome
Andreu‐Sánchez, S., Wu, J., & Fu, J. (2023) · iMeta · doi:10.1002/imt2.98 · Cited by 5
Fogarty, E. C., Schechter, M. S., Lolans, K., Sheahan, M. L., Veseli, I., Moore, R. M., Kiefl, E., Moody, T. U., Rice, P. A., Yu, M., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.03.25.534219 · Cited by 5
Off to a good start: current gaps and priorities in early-life microbiome research
Pettersen, V. K., Ponsero, A. J., Jian, C., Riumin, A., Kurilshikov, A., Moyo, S. J., Justine, M., Klingenberg, C., Debelius, J. W., Valles‐Colomer, M., et al. (2026) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuag010 · Cited by 4
Skrabulyte-Barbulescu, J., Yassin, L. K., Almazrouei, S., Alkuwaiti, S. H., Almarzooqi, S., AlNuaimi, F., Alketbi, S., Nakhal, M. M., Rutkowska-Gauvry, P., Matar, S. A., et al. (2026) · Gut Microbes · doi:10.1080/19490976.2026.2673888 · Cited by 6
Assessing the health of the gut microbial organ: why and how?
DeLeon, O., & Chang, E. B. (2025) · Journal of Clinical Investigation · doi:10.1172/jci184313 · Cited by 5
Impact of evolution on lifestyle in microbiome
González, A., Fullaondo, A., & Odriozola, A. (2024) · Advances in genetics · doi:10.1016/bs.adgen.2024.02.003 · Cited by 4
Rold, L. S., Jensen, A.-M., Arenholt, L. T. S., Leutscher, P. D. C., Ovesen, P., Hagstrøm, S., & Sørensen, S. (2024) · BMJ Open · doi:10.1136/bmjopen-2023-083358 · Cited by 4
Dai, D. L., Petersen, C., & Turvey, S. E. (2024) · Frontiers in Public Health · doi:10.3389/fpubh.2024.1455503 · Cited by 7
Gut Bacteroides fragilis in health and diseases: an updated review
Yang, Y., Cao, X., Kato, N., & Wang, Y. (2025) · Journal of Future Foods · doi:10.1016/j.jfutfo.2024.11.025 · Cited by 4
The compositional development of the microbiome in early life
Cher, A., & Yassour, M. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-818097-6.00008-0 · Cited by 4
Exploring the intersection of the microbiome and the developing brain: Impacts on schizophrenia risk
Gupta, L., & Hoffman, K. W. (2021) · Schizophrenia Research · doi:10.1016/j.schres.2021.08.010 · Cited by 4
Prenatal Gut Microbiota Predicts Temperament in Offspring at 1–2 Years
Cao, Y., Zhang, X., Zhang, Q., Fan, X., Zang, T., Bai, J., Wu, Y., Zhou, W., & Liu, Y. (2024) · Biological Research For Nursing · doi:10.1177/10998004241260894 · Cited by 3
Liu, T., Kress, A., Debelius, J. W., Zhao, N., Smirnova, E., Bandyopadhyay, S., Bonham, K. S., Comstock, S. S., Gill, S. R., Gern, J. E., et al. (2025) · iScience · doi:10.1016/j.isci.2025.112211 · Cited by 5
Perinatal factors influencing the earliest establishment of the infant microbiome
Linehan, K., Healy, K., Hurley, E., O'Shea, C., Ryan, C. A., Ross, R. P., Stanton, C., & Dempsey, E. M. (2025) · Microbiome Research Reports · doi:10.20517/mrr.2024.92 · Cited by 5
Minot, S. S., Mayer-Blackwell, K., Fiore-Gartland, A. J., Johnson, A., Self, S. G., Bhatti, P., Yao, L., Liu, L., Sun, X., Jinfa, Y., et al. (2024) · Gut Microbes · doi:10.1080/19490976.2024.2414975 · Cited by 4
Zhang, Y., Xu, Y., Dong, C., Zhang, M., Guan, Q., Chang, H., Hang, B., Mao, J., Snijders, A. M., & Xia, Y. (2025) · Environmental Science & Technology · doi:10.1021/acs.est.4c11640 · Cited by 4
Recent advances in the infant gut microbiome and health
Díaz, R., & Garrido, D. A. (2019) · Elsevier eBooks · doi:10.1016/b978-0-12-819178-1.00004-6 · Cited by 3
Siawaya, A. C. M., Kamgaing, É. K., Rogombe, S. M., Obiang, T., Massala, E. M., Mbadinga, M. J. V. M., Leboueny, M., Ndjindji, O. M., Nzoghe, A. M., Ondo, J. P., et al. (2019) · Paediatrics and International Child Health · doi:10.1080/20469047.2019.1577063 · Cited by 3
Liu, X., Li, X., Xia, B., Jin, X., Zeng, Z., Yan, S., Li, L., Yuan, S., Zhao, S., Dai, X., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.07.16.206714 · Cited by 3
Trueba, G. A., Cárdenas, P., Romo, G., & Gutiérrez, B. (2024) · Biosystems · doi:10.1016/j.biosystems.2024.105283 · Cited by 2
The human gut metacommunity as a conceptual aid in the development of precision medicine
Tannock, G. W. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1469543 · Cited by 2
Kim, S., Park, S., Ansari, A., Lee, G., Hur, Y. M., An, J., Lee, S., You, Y., & Kim, Y. J. (2025) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.70153 · Cited by 2
Zhang, Z., Jia, L., Liu, B., Liu, Y., Zhao, J., Wang, Y., Zhang, M., Qiao, W., Yang, B., Luo, L., et al. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1631590 · Cited by 2
Russell, M. M., Sosa-Moreno, A., Zhang, L., & Comstock, S. S. (2025) · mSphere · doi:10.1128/msphere.00445-25 · Cited by 2
Gut microbiome and pregnancy complications: emerging evidence and mechanistic insights
Hu, S., Miao, Z., Xiao, C., Fu, Y., Zheng, J., Hu, W., & Zheng, J.-S. (2026) · Gut Microbes · doi:10.1080/19490976.2026.2661417 · Cited by 3
Yang, R., Shi, Z., Li, Y., Huang, X., Li, Y., Li, X., Chen, Q., Hu, Y., & Li, X. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1459867 · Cited by 2
MADRe: Strain-level metagenomic classification through assembly-driven database reduction
Lipovac, J., Šikić, M., Vicedomini, R., & Križanović, K. (2026) · GigaScience · doi:10.1093/gigascience/giag030 · Cited by 3
New research frontiers pertaining to the infant gut microbiota
Ventura, M., van Sinderen, D., & Turroni, F. (2022) · Microbiome Research Reports · doi:10.20517/mrr.2022.12 · Cited by 2
Microbes, human milk, and prebiotics
Kujawska, M., Collado, M. C., & Hall, L. J. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-818097-6.00009-2 · Cited by 1
Domingues, C. P. F., Rebelo, J. S., Nogueira, T., Pothier, J. F., Monteiro, F., & Dionísio, F. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.04.25.061853 · Cited by 2
France, M., Brown, S. E., Rompalo, A., Brotman, R. M., & Ravel, J. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.11.16.468914 · Cited by 2
Childhood growth trajectory patterns are associated with the pubertal gut microbiotaPreprint
López-Domínguez, L., Bourdon, C., Hamilton, J. K., Taïbi, A., Bassani, D. G., Vaz, J. D. S., Buffarini, R., Tovo‐Rodrigues, L., Santos, I. S., Matijasevich, A., et al. (2023) · medRxiv · doi:10.1101/2023.06.20.23291663 · Cited by 2
Bahari, L. P. J., Sa’adah, N., Harry, R., & Baron, G. (2023) · World Psychology · doi:10.55849/wp.v2i3.396 · Cited by 1
Distribution of Antibiotic-Resistant Genes in Intestines of Infants and Influencing Factors
Wang, Y.-C., Jiang, T., Mo, L., Lu, H.-Z., Quan, L.-H., Zhong, P., & Guan, Y. (2024) · Critical Reviews in Eukaryotic Gene Expression · doi:10.1615/critreveukaryotgeneexpr.v34.i8.60 · Cited by 1
Mobile genetic elements: the hidden puppet masters underlying infant gut microbiome assembly?
Kreuze, K., Friman, V., & Vatanen, T. (2024) · Microbiome Research Reports · doi:10.20517/mrr.2024.51 · Cited by 1
Farooq, S., Talat, A., Dhariwal, A., Petersen, F. C., & Khan, A. U. (2025) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2025.107458 · Cited by 2
Gut Microbiota and Its Importance in Health and Disease
Midya, S., Banerjee, A., Pathak, S., & Duttaroy, A. K. (2024) · Springer eBooks · doi:10.1007/978-981-96-0297-1_1 · Cited by 1
Quan, T., Li, R., Chen, Y., & Gao, T. (2025) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2025.180867 · Cited by 1
Beghini, F., Brito, I., Gerstein, M., & Christakis, N. A. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.116724 · Cited by 2
Gut microbial signatures expose the westernized lifestyle of urban Ethiopian children
Kirsche, L., Leary, P., Blaser, M. J., Scharl, M. M., Negussie, A., & Mueller, A. (2026) · Communications Biology · doi:10.1038/s42003-026-09639-2 · Cited by 1
From transmission to manipulation: Ecological dynamics of the oral microbiota
Liu, X., Cai, Y., Huang, D., Xu, J. Q., Niu, C., Tu, Y., Chen, Z., Hou, L., Li, H., & Huang, Z. Z. (2026) · Microbiological Research · doi:10.1016/j.micres.2026.128633 · Cited by 1
The microbiome and pregnancy complications
Fuhler, G. M. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-818097-6.00002-x · Cited by 1
The Efficiency of Learning Media in Building Student Character
Yves, C., Murat, R., & Justine, K. (2023) · World Psychology · doi:10.55849/wp.v2i1.401 · Cited by 3
Belyaeva, I. A., Namazova-Baranova, L. S., Петровна, Б. Е., Turti, T. V., & Shukenbaeva, R. A. (2025) · Вопросы современной педиатрии · doi:10.15690/vsp.v23i6.2822 · Cited by 1
Unveiling strain-level dynamics in the human skin microbiome
Li, Z., Xia, J., & Wang, J. (2025) · Cell Host & Microbe · doi:10.1016/j.chom.2025.03.014 · Cited by 1
Jašarević, E., Hill, E. M., Kane, P. J., Rutt, L., Gyles, T. M., Folts, L. M., Rock, K. D., Howard, C. D., Morrison, K. E., Ravel, J., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.02.01.429213 · Cited by 1
Faculty Opinions recommendation of The gut microbiome in food allergy.
Hogan, S. P. (2020) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.734678664.793576846 · Cited by 1
SNV-FEAST: microbial source tracking with single nucleotide variantsPreprint
Briscoe, L., Halperin, E., & Garud, N. R. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.05.28.493810 · Cited by 1
A genome catalog of the early-life human skin microbiomePreprint
Shen, Z., Robert, L., Stolpman, M., Che, Y., Walsh, A., Saffery, R., Allen, K. J., Eckert, J., Young, A., Deming, C., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.05.22.541509 · Cited by 1
Immunotherapy and prevention of allergic diseases
Shamji, M. H., & Boyle, R. J. (2023) · Clinical & Experimental Allergy · doi:10.1111/cea.14377 · Cited by 1
Minot, S. S., Mayer-Blackwell, K., Fiore-Gartland, A. J., Johnson, A., Self, S. G., Bhatti, P., Yao, L. Y., Liu, L., Sun, X., Jinfa, Y., et al. (2023) · medRxiv · doi:10.1101/2023.12.16.23300077 · Cited by 1
Daele, E. V. (2024) · doi:10.18174/656497 · Cited by 1
Chowdhury, N. N., Forry, S. P., Servetas, S. L., Hunter, M. E., Dootz, J. N., Dunkers, J. P., & Jackson, S. A. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.11.26.625464 · Cited by 1
Barak, N., Bhattacharya, H., Asnicar, F., Sung, J., Segata, N., & Yassour, M. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.06.12.658885 · Cited by 1
Ennis, D., Andreu‐Sánchez, S., Jayaprakash, Y. K., Sinha, T., Peng, H., Goldberger, O., Docherty, J. A. D., Kuzub, N., Fernández-Pato, A., Zhao, S., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.06.23.661074 · Cited by 2
Joshi, J., Cumbo, F., & Blankenberg, D. J. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.06.663394 · Cited by 3
Pichler, M. J., Yamada, C., Shuoker, B., Silva, M. C. A., Gotoh, A., Leth, M. L., Schoof, E. M., Katoh, T., Sakanaka, M., Katayama, T., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.04.15.038927
Jurado, C. (2020) · ERA: Education and Research Archive (University of Alberta) · doi:10.7939/r3-vy9d-ne19
Human Milk Oligosaccharides and Microbiome Homeostasis
Ovalle, A., & Garrido, D. A. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-819475-1.00021-3
Maternal and Early-Life Factors Influence on Human Milk Composition and Infants' Gut Health
da Rosa, F. T., Dague, T. D., Carr, L. E., Andres, A., & Yeruva, L. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-819265-8.00062-0
The infant gut microbiome and resistome in health and disease
Reyman, M. (2021) · Utrecht University Repository (Utrecht University) · doi:10.33540/715
Diet and the Gut Microbiome in Early Life
Ranasinghe, P. D., & Abrahamsson, T. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-801238-3.66027-0
Bioetica - clonazione - tutela persona e della vita
Riz, R. (2000) · Indice penale
Nutt, S. L. (2020) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.737934649.793578393
The impact of multigenerational high-fat diet feeding on the gut microbiome and host metabolismPreprint
Wibowo, M. C., Yang, Z., Chavkin, T. A., Nguyen, B., Pham, L. D., Huang, T. L., Lynes, M. D., Tseng, Y., & Kostic, A. D. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.02.01.478488
Zhao, C., Wang, Y., Yang, J., Zhang, J., Liu, X., Zhang, H., Wang, X., Shen, N., Chen, B., Liu, Y., et al. (2020) · doi:10.21203/rs.3.rs-26036/v1
A microbiota membrane disrupter disseminates to the pancreas and increases β-cell massPreprint
Hill, J. H., Massaquoi, M. S., Sweeney, E. G., Wall, E. S., Jahl, P. E., Bell, R. S., Kallio, K., Derrick, D., Murtaugh, L. C., Parthasarathy, R., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.03.24.485696
Hall, L. J. (2020) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.736621062.793574623
Brook, I., Albenberg, L. G., Zong, W., & Long, S. S. (2022) · Elsevier eBooks · doi:10.1016/b978-0-323-75608-2.00187-7
Editorial: Intrauterine nutrition and adult metabolism
Xiao, X., & Su, L. (2022) · Frontiers in Nutrition · doi:10.3389/fnut.2022.1085083
The influence of maternal factors on the neonatal microbiome and healthPreprint
Zhu, B., Serrano, M. G., & Buck, G. A. (2023) · Research Square · doi:10.21203/rs.3.rs-2485214/v1
Early microbial intervention reduces diarrhea while improves later milk production in newborn calvesPreprint
Shen, Y., Li, Y., Wu, T., Dong, Q., Deng, Q., Liu, L., Guo, Y., Cao, Y., Li, Q., Shi, J., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.03.30.535013
Temporal colonization of the gut microbiome in neonatal Bos taurus at single nucleotide resolutionPreprint
Dong, Q., Hua, D., Wang, X., Jiao, Y., Liu, L., Deng, Q., Wu, T., Zou, H., Ding, L., Hu, S., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.03.30.535011
Ennis, D., Shmorak, S., Jantscher‐Krenn, E., & Yassour, M. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.07.17.549354
Foster, J. A., & Clarke, G. A. (2024) · Elsevier eBooks · doi:10.1016/b978-0-12-814800-6.00011-x
Additional file 3 of Using strain-resolved analysis to identify contamination in metagenomics data
Lou, Y. C., Hoff, J., Olm, M. R., West-Roberts, J. A., Diamond, S., Firek, B., Morowitz, M. J., & Banfield, J. F. (2023) · Figshare · doi:10.6084/m9.figshare.22613114
Additional file 4 of Understanding Horizontal Gene Transfer network in human gut microbiota
Li, C., Chen, J., & Li, S. C. (2020) · Figshare · doi:10.6084/m9.figshare.12637863
Meng, Y., Li, S., Zhang, C., & Zheng, H. (2022) · Figshare · doi:10.6084/m9.figshare.20761561
Meng, Y., Li, S., Zhang, C., & Zheng, H. (2022) · Figshare · doi:10.6084/m9.figshare.20761558
Meng, Y., Li, S., Zhang, C., & Zheng, H. (2022) · Figshare · doi:10.6084/m9.figshare.20761555
Additional file 2 of Understanding Horizontal Gene Transfer network in human gut microbiota
Li, C., Chen, J., & Li, S. C. (2020) · Figshare · doi:10.6084/m9.figshare.12637857
Metadata
- Authors
- Yassour, M., Jason, E., Hogstrom, L. J., Arthur, T. D., Tripathi, S., Siljander, H., Selvenius, J., Oikarinen, S., Hyöty, H., Virtanen, S. M., Ilonen, J., Ferretti, P., Pasolli, E., Tett, A., Asnicar, F., Segata, N., Vlamakis, H., Lander, E. S., Huttenhower, C., Knip, M., & Xavier, R. J.
- Affiliations
- Broad Institute (US)
- Tampere University Hospital (FI)
- University of Helsinki (FI)
- Tampere University (FI)
- University of Turku (FI)
- University of Trento (IT)
- Corresponding author
- Yassour, Moran
- Xavier, Ramnik J.
- ORCID
- Venue
- Cell Host & Microbe
- Publisher
- Elsevier BV
- Published
- 2018-07
- Volume
- 24
- Issue
- 1
- Pages
- 146-154.e4
- ISSN
- 1931-3128 (ISSN-L)
- PMC
- PMC6091882
- OpenAlex
- W2821623253
- Cited by
- 455
- References
- 35
- Citations by year
- 2026: 28 · 2025: 54 · 2024: 65 · 2023: 62 · 2022: 55 · 2021: 74 · 2020: 74 · 2019: 30 · 2018: 11
- FWCI
- 17.16
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell Host & Microbe (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- DSpace@MIT (Massachusetts Institute of Technology) (submittedVersion, cc-by-nc-nd)
- Iris (University of Trento) (submittedVersion)
- STM:n Hallinnonalan avoin julkaisuarkisto (Julkari) (submittedVersion)
- Funders
- National Institutes of Health (1DP3DK094338-01)
- Juvenile Diabetes Research Foundation in Israel (2-SRA-2016-247-S-B)
- National Institute of Diabetes and Digestive and Kidney Diseases
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Nursing › Nutrition and Dietetics › Infant Nutrition and Health
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Keywords
- infant gut microbiota, strain-level analysis, antibiotic resistance genes, Bacteroides uniformis
- MeSH terms
- Gastrointestinal Microbiome, Adult, Bacteroides, DNA, Bacterial, Feces, Female, Humans, Infant, Infant, Newborn, Longitudinal Studies, Male, Meconium, Mother-Child Relations, Prospective Studies, Cohort Studies, Drug Resistance, Bacterial, Metagenomics
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
