Chromosomal dynamics at the Shh locus: limb bud-specific differential regulation of competence and active transcription

Amano, Takanori, Sagai, Tomoko, Tanabe, Hideyuki, Mizushina, Yoichi, Nakazawa, Hiromi, Shiroishi, Toshihiko·2009·Developmental Cell
DOI 10.1016/j.devcel.2008.11.011

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  5. The chicken polydactyly (Po) locus causes allelic imbalance and ectopic expression of Shh during limb development
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  9. Decoding enhancer complexity with machine learning and high-throughput discovery
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  19. HnRNP U mediates the long-range regulation of Shh expression during limb development
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  25. Zebrafish as a genomics model for human neurological and polygenic disorders
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