Chromosomal dynamics at the Shh locus: limb bud-specific differential regulation of competence and active transcription
Amano, Takanori, Sagai, Tomoko, Tanabe, Hideyuki, Mizushina, Yoichi, Nakazawa, Hiromi, Shiroishi, Toshihiko·2009·Developmental Cell
Cited by (270)
Items 201–270 of 270
- The Contraction of Time and Space in Remote Chromosomal InteractionsMichael Levine · 2014 · Cell
- Bringing the Signal into the NucleusIJsbrand M. Kramer · 2015 · Elsevier eBooks
- The Conserved Non-Coding Sequence 2 (CNS2) Enhances CD69 Transcription through Cooperation between the Transcription Factors Oct1 and RUNX1Miguel Gomez Fontela, Laura Notario, Elisenda Alari‐Pahissa, Elena Lorente, Pilar Lauzurica · 2019 · Genes
- A 3D Genome Atlas of Genetic Variants and Their Pathological Effects in CancerLi Tang, Matthew C. Hill, Mingxing He, Junhao Chen, Zirui Wang, Patrick T. Ellinor, Min Li · 2025 · Advanced Science
- Protein signaling and morphological development of the tail fluke in the embryonic beluga whale (Delphinapterus leucas)Lia M. Gavazzi, Muraleedharan G. Nair, ROBERT S. SUYDAM, Sharon Usip, J. G. M. Thewissen, Lisa Noelle Cooper · 2024 · Developmental Dynamics
- Sailing the Hi-C’sYousra Ben Zouari, Anne Marie Molitor, Tom Sexton · 2017 · Elsevier eBooks
- Joint inference and alignment of genome structures enables characterization of compartment-independent reorganization across cell typesLila Rieber, Shaun Mahony · 2019 · Epigenetics & Chromatin
- Red Light/Green Light, a Dual Fluorescent Protein Reporter System To Study Enhancer-Promoter Specificity in DrosophilaEric M. Camino, Micheal L Weinstein, Mary P List, Jordan E. Vellky, Mark Rebeiz, Thomas M. Williams · 2020 · G3 Genes Genomes Genetics
- Multilayered Mechanisms for Long-range Regulatory Interactions in Eukaryotic TranscriptionTakashi Fukaya · 2025 · Journal of Molecular Biology
- Chromosomal dynamics of cell cycle regulator gene p21 during transcriptional activationAnatoly A. Philimonenko, Jiřı́ Janáček, Luc Snyers, Marlene Almeder, Walter Berger, Wolfgang M. Schmidt, Christian Schöfer, Pavel Hozák, Klara Weipoltshammer · 2010 · Journal of Structural Biology
- Visualization of the spatial arrangement of nuclear organization using three-dimensional fluorescence in situ hybridization in early mouse embryos: A new “EASI-FISH chamber glass” for mammalian embryosMasataka Nakaya, Hideyuki Tanabe, Shingo Takamatsu, Misaki Hosokawa, Tasuku Mitani · 2017 · Journal of Reproduction and Development
- Genetic cold cases: lessons from solving complex congenital limb disordersGuillaume Andrey, Denis Duboule · 2023 · Genes & Development
- Transvection-like interchromosomal interaction is not observed at the transcriptional level when tested in the Rosa26 locus in mouseKeiji Tanimoto, Hitomi Matsuzaki, Eiichi Okamura, Aki Ushiki, Akiyoshi Fukamizu, James Douglas Engel · 2019 · PLoS ONE
- Chromatin architecture and topology in pluripotent stem cellsAngeliki Platania, Tom Sexton · 2020 · Elsevier eBooks
- An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell PopulationsLlorenç Rovirosa, Laureano Tomás-Daza, Blanca Urmeneta, Alfonso Valencia, Biola M. Javierre · 2023 · Journal of Visualized Experiments
- The shh limb enhancer is activated in patterned limb regeneration but not in hypomorphic limb regeneration in Xenopus laevisReimi Tada, Takuya Higashidate, Takanori Amano, Shoma Ishikawa, Chifuyu Yokoyama, Suzu Kobari, Saki Nara, Koshiro Ishida, Akane Kawaguchi, Haruki Ochi et al. · 2023 · Developmental Biology
- Regulation of Vertebrate Conduction System DevelopmentJan Hendrik van Weerd, Vincent M. Christoffels · 2016 · Springer eBooks
- TRIP through the chromatin: A high throughput exploration of enhancer regulatory landscapesAlexey V. Pindyurin, Johann de Jong, Waseem Akhtar · 2015 · Genomics
- Heterogeneity of enhancers embodies shared and representative functional groups underlying developmental and cell type-specific gene regulationWei Song, Ivan Ovcharenko · 2022 · Gene
- Long-range control of T-cell developmentDominic van Essen · 2013 · Blood
- Combining Genetic and Developmental Methods to Study Musculoskeletal Evolution in PrimatesTerence Dante Capellini, Heather L. Dingwall · 2017 · Cambridge University Press eBooks
- From Chromosome Conformation Capture to Polymer Physics and BackGuido Tiana, Édith Heard, Luca Giorgetti · 2017 · Elsevier eBooks
- Characterization of cis ‐regulatory elements for Fgf10 expression in the chick embryoHiroko Kawakami, Austin Johnson, Yu Fujita, Avery Swearer, Naoyuki Wada, Yasuhiko Kawakami · 2018 · Developmental Dynamics
- Hedgehog Signaling in Development and DiseaseDagan Jenkins · 2015 · Elsevier eBooks
- Limb Development Anomalies: GeneticsSylvie Manouvrier‐Hanu, Florence Petit, Muriel Holder‐Espinasse, Fabienne Escande · 2012 · Encyclopedia of Life Sciences
- Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolutionLaureano Tomás-Daza, Llorenç Rovirosa, Paula López-Martí, Andrea Nieto-Aliseda, François Serra, Ainoa Planas‐Riverola, Òscar Molina, Rebecca McDonald, Cédric Ghevaert, Esther Cuatrecasas et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- EnhancerTracker: Comparing cell-type-specific enhancer activity of DNA sequence triplets via an ensemble of deep convolutional neural networksAnthony B. Garza, Rolando García, Luis M. Solis, Marc S. Halfon, Hani Z. Girgis · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Cis-Regulatory Enhancer Mutations are a Cause of Human Limb MalformationsJulia E. VanderMeer, Nadav Ahituv · 2012 · Springer eBooks
- Keeping the genome in shape : a role for protein and RNAErik Splinter · 2011 · EUR Research Repository (Erasmus University Rotterdam)
- Genetic studies of congenital upper limb anomaliesTobias Laurell · 2014 · Figshare
- FUNCTION OF CORE PROMOTERS IN DIFFERENTIAL GENE REGULATION DURING EMBRYOGENESISJochen Gehrig · 2010 · University of Birmingham Institutional Research Archive (University of Birmingham)
- Development of a PhiC31 system for functional characterisation of cis-regulatory elements in reporter transgenic zebrafishJennifer A. Roberts · 2013 · University of Birmingham Institutional Research Archive (University of Birmingham)
- Molecular determinants for the outcome in gemcitabine-treated pancreatic cancerClaudia M. Lüske · 2015
- EPIGENTIC LANDSCAPE OF THE PLASMINOGEN ACTIVATOR UROKINASE LOCUS IN QUEBEC PLATELET DISORDERAsim Soomro · 2016 · MacSphere (McMaster University)
- SURVEY AND SUMMARY Chromatin and epigenetic features of long-range gene regulationNathan Harmston, Boris Lenhard · 2013
- Regulatory architecture of the Pax6 locusAdam Buckle · 2014 · ERA
- Transcriptional and epigenetic control of gene expression in embryo developmentAnn Boija · 2016 · DiVA (Stockholm University)
- Transcriptional Regulation: When 1+1≠2Verena Thormann, Marina Borschiwer, Sebastiaan H. Meijsing · 2016 · Springer eBooks
- Quantifying Eukaryotic Gene Regulation in Hormone Response and Disease.Christopher M. Vockley · 2016 · DukeSpace (Duke University)
- Mapping the Shh regulatory landscapeE. S. Anderson · 2015 · ERA
- Sonic hedgehog is required for neural crest-dependent patterning of the intrinsic tongue musculatureShigeru Okuhara, Anahid A. Birjandi, Hadeel Adel Al-Lami, Tomoko Sagai, Takanori Amano, Toshihiko Shiroishi, Karen J. Liu, Martyn T. Cobourne, Sachiko Iseki · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
- The Role of Iroquois 3 and 5 in Limb Bud Pattern Formation and MorphogenesisDanyi Li · 2014 · TSpace (University of Toronto)
- Enhancer-Promoter Interactions and Their Role in the Control of Epidermal DifferentiationInez Y. Oh, Cristina de Guzman Strong · 2018 · Contributions to management science
- Investigation of transcription factor binding at distal regulatory elementsJoanna Mitchelmore · 2017 · Apollo (University of Cambridge)
- Specific communication between enhancers and alternative promoters mediates finer regulation of transcription initiationBardales Mendieta, Jorge Adalberto · 2018
- How do digits emerge? - Mathematical Models of Limb DevelopmentDagmar Iber, Philipp Germann · 2014 · arXiv (Cornell University)
- The 5Th International 3D Genomics Workshop 2018: Conference ReportYan Zhang, Yijun Ruan, Guoliang Li · 2019 · Epigenomics
- Distal Enhancer – Gene Interactions at the Lmo2 locus in Mouse Erythroid cellsAnandi Bhattacharya · 2012 · Library and Archives Canada (Government of Canada)
- Investigating phase separation mechanisms for transcriptional controlMarc Boehning · 2020
- Parola poetica e silenzio in Gregorio di Nazianzo: considerazioni storico-religiose su alcune riletture di OdisseoGiovanni Tosetti · 2012
- The Contributions of RET Noncoding Variation to Hirschsprung DiseaseZachary E. Stine, Andrew S. McCallion · 2012 · Springer eBooks
- Faculty Opinions recommendation of The Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis.Vı́ctor Borrell · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Caracterização de rearranjos cromossômicos citogeneticamente equilibrados associados a quadros clínicosAna Carolina dos Santos Fonseca · 2016 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
- Long Range Inter-Chromosomal Interaction of Oct4 Distal Enhancer Loci Regulates ESCs PluripotencyByoung-San Moon, David Huang, Fan Gao, Mingyang Cai, Guochang Lyu, Lei Zhang, Jun Chen, Wange Lu · 2022 · SSRN Electronic Journal
- Hedgehog Signalling in Development and DiseaseDagan Jenkins · 2022 · Elsevier eBooks
- A 3D genome atlas of genetic variants and their pathological effectsLi Tang, M. Hill, Ming-Xing He, Jun-Hao Chen, P. Ellinor, Min Li · 2022 · bioRxiv
- Dependency of 3D chromatin folding on RNA polymerase II at different cell cycle stagesNadine Übelmesser · 2023
- Genome-Wide Annotation of Promoter-Enhancer Interactions via Chromatin Loops in the Hybrid Rat Diversity PanelPanjun Kim, Burt M. Sharp, Robert W. Williams, Hao Chen · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- EnhancerMatcher: comparing cell-type-specific enhancer activity of DNA sequences using deep convolutional neural networks and explainable AILuis M. Solis, William L Melendez, Shantanu H Fuke, Sayantan Paul, Anthony B. Garza, Rolando García, Marc S. Halfon, Hani Z. Girgis · 2025 · NAR Genomics and Bioinformatics
- Additional file 3 of Single-cell 3D genome structure reveals distinct human pluripotent statesNiannian Li, Kairang Jin, Liu, Bin, Yang, Mingzhu, Shi, PanPan, Dai Heng, Wang, Jichang, Liu, Lin · 2024 · Figshare
- Additional file 4 of Single-cell 3D genome structure reveals distinct human pluripotent statesLi, Niannian, Kairang Jin, Liu, Bin, Yang, Mingzhu, Panpan Shi, Dai Heng, Wang, Jichang, Liu, Lin · 2024 · Figshare
- Additional file 2 of Single-cell 3D genome structure reveals distinct human pluripotent statesNiannian Li, Kairang Jin, Liu, Bin, Yang, Mingzhu, Panpan Shi, Dai Heng, Wang, Jichang, Liu, Lin · 2024 · Figshare
- Additional file 1 of Single-cell 3D genome structure reveals distinct human pluripotent statesNiannian Li, Kairang Jin, Liu, Bin, Yang, Mingzhu, Shi, PanPan, Dai Heng, Wang, Jichang, Liu, Lin · 2024 · Figshare
- Discovery and analysis of silencers in Drosophila acting as enhancers in other cellular contextsAlexandre Palagi · 2018 · theses.fr (ABES)
- The functional and spatial organization of chromatin during Thymocyte developmentYousra Ben Zouari · 2018
- Signatures nucléotidiques de l'activité des enhancers développementaux chez l'ascidie Ciona intestinalisMarion Guéroult-Bellone · 2016 · theses.fr (ABES)
- Exploring the structural and functional dynamics of the X-inactivation centre locus during developmentRafael Galupa · 2017 · theses.fr (ABES)
- Identification and characterization of Polycomb repressed gene-enhancer loopsCharbel Souaid · 2019 · theses.fr (ABES)
- Sen1-mediated RNAPIII transcription termination controls the positioning of condensin on mitotic chromosomesJulieta Rivosecchi · 2019
- Role of the cardioprotective protein, Carabin, and its nuclear partners, MLL3 and CHD8, in gene regulation during cardiac hypertrophyRoberto Pane · 2020