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Cited by 155

Target-Mediated Protection of Endogenous MicroRNAs in C. elegans

Chatterjee, Saibal, Fasler, Monika, Büssing, Ingo, Großhans, Helge·2011·Developmental Cell
DOI 10.1016/j.devcel.2011.02.008
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  • Depletion or reduction of the 5'->3' exonucleases xrn-1 and xrn-2 result in accumulation of specific miRNAs and miR* strands.

    “Further, depletion or reduction of the 5′ ➔ 3′ exonucleases xrn‐1 and xrn‐2 result in accumulation of specific miRNAs and miR* strands (Chatterjee et al., 2011).”

    From microRNA strand selection: Unwinding the rules (2021) · cites this paper as Chatterjee et al., 2011

  • Reduction of xrn-1 or xrn-2 affects the 5p/3p ratios of certain miRNAs.

    “Interestingly, this effect is not equal—reduction of xrn‐1 or xrn‐2 have been shown to affect the 5p/3p ratios of certain miRNAs (Chatterjee et al., 2011; Miki, Rüegger, Gaidatzis, Stadler, & Großhans, 2014).”

    From microRNA strand selection: Unwinding the rules (2021) · cites this paper as Chatterjee et al., 2011

  • The ratio of miR::miR* strands may be influenced by target availability, as the presence of suitable mRNA targets can stabilize cognate miRNAs.

    “It has been suggested that the ratio of miR::miR* strands may be influenced by target availability, as the presence of suitable mRNA targets can stabilize cognate miRNAs (Chatterjee, Fasler, Büssing, & Großhans, 2011; Tsai et al., 2016).”

    From microRNA strand selection: Unwinding the rules (2021) · cites this paper as Chatterjee, Fasler, Büssing, & Großhans, 2011

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Research works printed but not linked: 36

  1. [1]1. Ameres, S.L. ∙ Horwich, M.D. ∙ Hung, J.H. ... Target RNA-directed trimming and tailing of small silencing RNAs Science. 2010; 328:1534-1539 Crossref Scopus (459) PubMed Google Scholar
  2. [2]2. Bail, S. ∙ Swerdel, M. ∙ Liu, H. ... Differential regulation of microRNA stability RNA. 2010; 16:1032-1039 Crossref Scopus (239) PubMed Google Scholar
  3. [3]3. Bushati, N. ∙ Cohen, S.M. microRNA functions Annu. Rev. Cell Dev. Biol. 2007; 23:175-205 Crossref Scopus (2555) PubMed Google Scholar
  4. [4]4. Büssing, I. ∙ Yang, J.S. ∙ Lai, E.C. ... The nuclear export receptor XPO-1 supports primary miRNA processing in C. elegans and Drosophila EMBO J. 2010; 29:1830-1839 Crossref Scopus (62) PubMed Google Scholar
  5. [5]5. Carthew, R.W. ∙ Sontheimer, E.J. Origins and mechanisms of miRNAs and siRNAs Cell. 2009; 136:642-655 Full Text Full Text (PDF) Scopus (4123) PubMed Google Scholar
  6. [6]6. Cazalla, D. ∙ Yario, T. ∙ Steitz, J. Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA Science. 2010; 328:1563-1566 Crossref Scopus (403) PubMed Google Scholar
  7. [7]7. Chatterjee, S. ∙ Großhans, H. Active turnover modulates mature microRNA activity in Caenorhabditis elegans Nature. 2009; 461:546-549 Crossref Scopus (295) PubMed Google Scholar
  8. [8]8. Chiang, H.R. ∙ Schoenfeld, L.W. ∙ Ruby, J.G. ... Mammalian microRNAs: experimental evaluation of novel and previously annotated genes Genes Dev. 2010; 24:992-1009 Crossref Scopus (681) PubMed Google Scholar
  9. [9]9. Czech, B. ∙ Zhou, R. ∙ Erlich, Y. ... Hierarchical rules for Argonaute loading in Drosophila Mol. Cell. 2009; 36:445-456 Full Text Full Text (PDF) Scopus (217) PubMed Google Scholar
  10. [10]10. de Wit, E. ∙ Linsen, S.E. ∙ Cuppen, E. ... Repertoire and evolution of miRNA genes in four divergent nematode species Genome Res. 2009; 19:2064-2074 Crossref Scopus (100) PubMed Google Scholar
  11. [11]11. Ding, X.C. ∙ Slack, F.J. ∙ Großhans, H. The let-7 microRNA interfaces extensively with the translation machinery to regulate cell differentiation Cell Cycle. 2008; 7:3083-3090 Crossref Scopus (42) PubMed Google Scholar
  12. [12]12. Ghildiyal, M. ∙ Xu, J. ∙ Seitz, H. ... Sorting of Drosophila small silencing RNAs partitions microRNA∗ strands into the RNA interference pathway RNA. 2010; 16:43-56 Crossref Scopus (293) PubMed Google Scholar
  13. [13]13. Griffiths-Jones, S. ∙ Saini, H.K. ∙ Dongen, S.V. ... miRBase: tools for microRNA genomics Nucleic Acids Res. 2007; 36:D154-D158 Crossref Scopus (3769) PubMed Google Scholar
  14. [14]14. Großhans, H. ∙ Johnson, T. ∙ Reinert, K.L. ... The temporal patterning microRNA let-7 regulates several transcription factors at the larval to adult transition in C. elegans Dev. Cell. 2005; 8:321-330 Full Text Full Text (PDF) Scopus (216) PubMed Google Scholar
  15. [15]15. Han, J. ∙ Lee, Y. ∙ Yeom, K.H. ... Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex Cell. 2006; 125:887-901 Full Text Full Text (PDF) Scopus (1220) PubMed Google Scholar
  16. [16]16. Hayes, G.D. ∙ Frand, A.R. ∙ Ruvkun, G. The mir-84 and let-7 paralogous microRNA genes of Caenorhabditis elegans direct the cessation of molting via the conserved nuclear hormone receptors NHR-23 and NHR-25 Development. 2006; 133:4631-4641 Crossref Scopus (84) PubMed Google Scholar
  17. [17]17. Henry, Y. ∙ Wood, H. ∙ Morrissey, J.P. ... The 5′ end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site EMBO J. 1994; 13:2452-2463 Crossref Scopus (272) PubMed Google Scholar
  18. [18]18. Hurschler, B.A. ∙ Harris, D.T. ∙ Großhans, H. The type II poly(A)-binding protein PABP-2 genetically interacts with the let-7 miRNA and elicits heterochronic phenotypes in C. elegans Nucl. Acids Res. 2011; in press Crossref Scopus (15) Google Scholar
  19. [19]19. Hutvagner, G. ∙ Simard, M.J. ∙ Mello, C.C. ... Sequence-specific inhibition of small RNA function PLoS Biol. 2004; 2:E98 Crossref Scopus (583) PubMed Google Scholar
  20. [20]20. Kamath, R.S. ∙ Fraser, A.G. ∙ Dong, Y. ... Systematic functional analysis of the Caenorhabditis elegans genome using RNAi Nature. 2003; 421:231-237 Crossref Scopus (2877) PubMed Google Scholar
  21. [21]21. Kato, M. ∙ de Lencastre, A. ∙ Pincus, Z. ... Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development Genome Biol. 2009; 10:R54 Crossref Scopus (121) PubMed Google Scholar
  22. [22]22. Khvorova, A. ∙ Reynolds, A. ∙ Jayasena, S.D. Functional siRNAs and miRNAs exhibit strand bias Cell. 2003; 115:209-216 Full Text Full Text (PDF) Scopus (2095) PubMed Google Scholar
  23. [23]23. Krüger, J. ∙ Rehmsmeier, M. RNAhybrid: microRNA target prediction easy, fast and flexible Nucleic Acids Res. 2006; 34:W451-W454 Crossref Scopus (1432) PubMed Google Scholar
  24. [24]24. Moss, E.G. ∙ Lee, R.C. ∙ Ambros, V. The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA Cell. 1997; 88:637-646 Full Text Full Text (PDF) Scopus (713) PubMed Google Scholar
  25. [25]25. Okamura, K. ∙ Liu, N. ∙ Lai, E.C. Distinct mechanisms for microRNA strand selection by Drosophila Argonautes Mol. Cell. 2009; 36:431-444 Full Text Full Text (PDF) Scopus (243) PubMed Google Scholar
  26. [26]26. Okamura, K. ∙ Phillips, M.D. ∙ Tyler, D.M. ... The regulatory activity of microRNA(∗) species has substantial influence on microRNA and 3′ UTR evolution Nat. Struct. Mol. Biol. 2008; 15:354-363 Crossref Scopus (445) PubMed Google Scholar
  27. [27]27. Petfalski, E. ∙ Dandekar, T. ∙ Henry, Y. ... Processing of the precursors to small nucleolar RNAs and rRNAs requires common components Mol. Cell. Biol. 1998; 18:1181-1189 Crossref Scopus (181) PubMed Google Scholar
  28. [28]28. Pillai, R.S. ∙ Bhattacharyya, S.N. ∙ Artus, C.G. ... Inhibition of translational initiation by Let-7 microRNA in human cells Science. 2005; 309:1573-1576 Crossref Scopus (1158) PubMed Google Scholar
  29. [29]29. Poole, T.L. ∙ Stevens, A. Comparison of features of the RNase activity of 5′-exonuclease-1 and 5′-exonuclease-2 of Saccharomyces cerevisiae Nucleic Acids Symp. Ser. 1995; 33:79-81 PubMed Google Scholar
  30. [30]30. Reinhart, B.J. ∙ Slack, F.J. ∙ Basson, M. ... The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans Nature. 2000; 403:901-906 Crossref Scopus (3972) PubMed Google Scholar
  31. [31]31. Resnick, T.D. ∙ McCulloch, K.A. ∙ Rougvie, A.E. miRNAs give worms the time of their lives: small RNAs and temporal control in Caenorhabditis elegans Dev. Dyn. 2010; 239:1477-1489 PubMed Google Scholar
  32. [32]32. Ruby, J.G. ∙ Jan, C. ∙ Player, C. ... Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans Cell. 2006; 127:1193-1207 Full Text Full Text (PDF) Scopus (773) PubMed Google Scholar
  33. [33]33. Schwarz, D.S. ∙ Hutvágner, G. ∙ Du, T. ... Asymmetry in the assembly of the RNAi enzyme complex Cell. 2003; 115:199-208 Full Text Full Text (PDF) Scopus (2278) PubMed Google Scholar
  34. [34]34. Seitz, H. Redefining MicroRNA Targets Curr. Biol. 2009; 19:870-873 Full Text Full Text (PDF) Scopus (306) PubMed Google Scholar
  35. [35]35. Tomari, Y. ∙ Matranga, C. ∙ Haley, B. ... A protein sensor for siRNA asymmetry Science. 2004; 306:1377-1380 Crossref Scopus (485) PubMed Google Scholar
  36. [36]36. Weidhaas, J.B. ∙ Babar, I. ∙ Nallur, S.M. ... MicroRNAs as potential agents to alter resistance to cytotoxic anticancer therapy Cancer Res. 2007; 67:11111-11116 Crossref Scopus (361) PubMed Google Scholar

Cited by

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Authors
Chatterjee, S., Fasler, M., Büssing, I., & Großhans, H.
Venue
Developmental Cell
Publisher
Elsevier BV
Published
2011-03
Volume
20
Issue
3
Pages
388-396
ISSN
1534-5807
DOI
10.1016/j.devcel.2011.02.008
Cited by
155
References
1
Language
en
Licence
Funders
  • European Research Council (ERC 2419845)
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (31003A_127052)
  • Free Market Institute, Texas Tech University
  • EMBO
  • Marie Curie

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