A Consensus Molecular Classification of Muscle-invasive Bladder Cancer
Open accessPublished version of a preprint
Abstract
BACKGROUND: Muscle-invasive bladder cancer (MIBC) is a molecularly diverse disease with heterogeneous clinical outcomes. Several molecular classifications have been proposed, but the diversity of their subtype sets impedes their clinical application. OBJECTIVE: To achieve an international consensus on MIBC molecular subtypes that reconciles the published classification schemes. DESIGN, SETTING, AND PARTICIPANTS: We used 1750 MIBC transcriptomic profiles from 16 published datasets and two additional cohorts. OUTCOME MEASUREMENTS AND STATISTICAL ANALYSIS: We performed a network-based analysis of six independent MIBC classification systems to identify a consensus set of molecular classes. Association with survival was assessed using multivariable Cox models. RESULTS AND LIMITATIONS: We report the results of an international effort to reach a consensus on MIBC molecular subtypes. We identified a consensus set of six molecular classes: luminal papillary (24%), luminal nonspecified (8%), luminal unstable (15%), stroma-rich (15%), basal/squamous (35%), and neuroendocrine-like (3%). These consensus classes differ regarding underlying oncogenic mechanisms, infiltration by immune and stromal cells, and histological and clinical characteristics, including outcomes. We provide a single-sample classifier that assigns a consensus class label to a tumor sample's transcriptome. Limitations of the work are retrospective clinical data collection and a lack of complete information regarding patient treatment. CONCLUSIONS: This consensus system offers a robust framework that will enable testing and validation of predictive biomarkers in future prospective clinical trials. PATIENT SUMMARY: Bladder cancers are heterogeneous at the molecular level, and scientists have proposed several classifications into sets of molecular classes. While these classifications may be useful to stratify patients for prognosis or response to treatment, a consensus classification would facilitate the clinical use of molecular classes. Conducted by multidisciplinary expert teams in the field, this study proposes such a consensus and provides a tool for applying the consensus classification in the clinical setting.
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The basal subtype of BLCA is known to be sensitive to immunotherapy and exhibits higher immune cell infiltration.
“which is known to be sensitive to immunotherapy and exhibits higher immune cell infiltration 43”
From TBX3 shapes an immunosuppressive microenvironment and induces immunotherapy resistance (2025) · cites this paper as [43]
The Results (Transcriptomic characterization; page not supplied) report immune infiltration in Ba/Sq tumors. The Results (Therapeutic opportunities; page not supplied) say their immune-marker expression suggests they might be more responsive to immunotherapy, but also state that no consensus class had an expression profile clearly indicating response. Thus, the claim overstates immunotherapy sensitivity as established. (LLM, conf=0.90)
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“We compared the consensus classes with the TCGA PanCancer Atlas integrative classification [23] (Supplementary Fig.”
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From mucosal infection to successful cancer immunotherapy
Goubet, A.-G., Rouanne, M., Derosa, L., Kroemer, G., & Zitvogel, L. (2023) · Nature Reviews Urology · doi:10.1038/s41585-023-00784-5 · Cited by 11 · see citing works
TBX3 shapes an immunosuppressive microenvironment and induces immunotherapy resistance
Liu, Z., Zhang, C., Xiao, J., He, Y., Liang, H., Huang, J., Cai, Z., Yi, Z., Chen, M., Li, Y., et al. (2025) · Theranostics · doi:10.7150/thno.103175 · Cited by 8 · see citing works
- Authors
- Kamoun, A., de Reyniès, A., Allory, Y., Sjödahl, G., Robertson, A. G., Seiler, R., Hoadley, K. A., Groeneveld, C. S., Al-Ahmadie, H., Choi, W., Castro, M. A. A., Fontugne, J., Eriksson, P., Mo, Q., Kardos, J., Zlotta, A., Hartmann, A., Dinney, C. P., Bellmunt, J., Powles, T., Malats, N., Chan, K. S., Kim, W. Y., McConkey, D. J., Black, P. C., Dyrskjøt, L., Höglund, M., Lerner, S. P., Real, F. X., Radvanyi, F., Aine, M., Al-Ahmadie, H., Allory, Y., Bellmunt, J., Bernard-Pierrot, I., Black, P. C., Castro, M. A. A., Chan, K. S., Choi, W., Czerniak, B., Dinney, C. P., Dyrskjøt, L., Eriksson, P., Fontugne, J., Gibb, E. A., Groeneveld, C. S., Hartmann, A., Hoadley, K. A., Höglund, M., Kamoun, A., Kardos, J., Kim, J., Kim, W. Y., Kwiatkowski, D. J., Lebret, T., Lerner, S. P., Liedberg, F., Malats, N., McConkey, D. J., Mo, Q., Powles, T., Radvanyi, F., Real, F. X., de Reyniès, A., Robertson, A. G., Siefker-Radtke, A., Sirab, N., Seiler, R., Sjödahl, G., Taber, A., Weinstein, J., & Zlotta, A.
- Affiliations
- Broad Institute (US)
- Hôpital René Huguenin (FR)
- Friedrich-Alexander-Universität Erlangen-Nürnberg (DE)
- ORCID
- Venue
- European Urology
- Publisher
- Elsevier BV
- Published
- 2020-04
- Volume
- 77
- Issue
- 4
- Pages
- 420-433
- ISSN
- 0302-2838 (ISSN-L)
- PMC
- PMC7690647
- OpenAlex
- W2975497362
- Cited by
- 1,359
- References
- 1
- Citations by year
- 2026: 169 · 2025: 191 · 2024: 211 · 2023: 233 · 2022: 215 · 2021: 210 · 2020: 109 · 2019: 21
- FWCI
- 136.89
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- European Urology (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion, cc-by-nc-nd)
- HAL (submittedVersion, other-oa)
- Lund University Publications (Lund University) (submittedVersion)
- Repositori digital de la UPF (Universitat Pompeu Fabra) (submittedVersion, cc-by-nc-nd)
- Funders
- National Cancer Institute
- Cancerfonden (2017/278)
- National Human Genome Research Institute
- Topics
- Health Sciences › Medicine › Surgery › Bladder and Urothelial Cancer Treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Breast Cancer Treatment Studies
- Health Sciences › Medicine › Surgery › Urinary and Genital Oncology Studies
- Keywords
- muscle-invasive bladder cancer, molecular classification, consensus molecular subtypes, transcriptomic profiles, prognostic stratification, tumor immune infiltration, oncogenic mechanisms
- MeSH terms
- Aged, Aged, 80 and over, Urinary Bladder Neoplasms, Female, Humans, Male, Middle Aged, Neoplasm Invasiveness, Retrospective Studies, Consensus
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