The Human Cell Atlas bone marrow single-cell interactive web portal

Hay, Stuart B., Ferchen, Kyle, Chetal, Kashish, Grimes, H. Leighton, Salomonis, Nathan·2018·Experimental Hematology

Cited by (269)

Items 101–200 of 269

  1. Regulatory Programs of B-cell Activation and Germinal Center Reaction Allow B-ALL Escape from CD19 CAR T-cell Therapy
    Nam Gyu Im, Amy Guillaumet-Adkins, Megha Wal, Anna J. Rogers, Julia Frede, Claire C. Havig, Jing Yang, Praveen Anand, Sarah K. Stegmann, Johannes Moritz Waldschmidt et al. · 2022 · Cancer Immunology Research
  2. Activating p53 abolishes self-renewal of quiescent leukaemic stem cells in residual CML disease
    Mary T. Scott, Wei Liu, Rebecca Mitchell, Cassie J. Clarke, Ross Kinstrie, Felix Warren, Hassan Hussain Almasoudi, Thomas Stevens, Karen M. Dunn, John Pritchard et al. · 2024 · Nature Communications
  3. HOXA9/IRX1 expression pattern defines two subgroups of infant MLL-AF4-driven acute lymphoblastic leukemia
    Vasiliki Symeonidou, Katrin Ottersbach · 2020 · Experimental Hematology
  4. Abcc1 and Ggt5 support lymphocyte guidance through export and catabolism of S -geranylgeranyl- l -glutathione
    Antonia E. Gallman, Finn D. Wolfreys, David N. Nguyen, Moriah Sandy, Ying Xu, Jinping An, Zhongmei Li, Alexander Marson, Erick Lu, Jason G. Cyster · 2021 · Science Immunology
  5. Single cell multi-omic reference atlases of non-human primate immune tissues reveals CD102 as a biomarker for long-lived plasma cells
    Ryan P. Staupe, Kenneth E. Lodge, Nithya Thambi, David Toole, Alex M. Tamburino, Dan Chang, Bonnie J. Howell, Daria J. Hazuda, Kalpit A. Vora, Nicole Sullivan · 2022 · Communications Biology
  6. Integrated single cell analysis shows chronic alcohol drinking disrupts monocyte differentiation in the bone marrow
    Sloan A. Lewis, Brianna M. Doratt, Qi Qiao, Madison B. Blanton, Kathleen A. Grant, Ilhem Messaoudi · 2023 · Stem Cell Reports
  7. Decoding Susceptibility to Respiratory Viral Infections and Asthma Inception in Children
    James F. Read, Anthony Bosco · 2020 · International Journal of Molecular Sciences
  8. Mutated clones driving leukemic transformation are already detectable at the single-cell level in CD34-positive cells in the chronic phase of primary myelofibrosis
    Sandra Parenti, Sebastiano Rontauroli, Chiara Carretta, Selene Mallia, Elena Genovese, Chiara Chiereghin, Clelia Peano, Lara Tavernari, Elisa Bianchi, Sebastian Fantini et al. · 2021 · npj Precision Oncology
  9. Knowledge-based classification of fine-grained immune cell types in single-cell RNA-Seq data
    Xuan Liu, Sara J.C. Gosline, Lance T. Pflieger, Pierre Wallet, Archana Iyer, Justin Guinney, Andrea H. Bild, Jeffrey T. Chang · 2021 · Briefings in Bioinformatics
  10. Advances in Single-Cell Sequencing Technology and Its Application in Poultry Science
    Yong Liu, Shuangmin Liang, Bo Wang, Jinbo Zhao, Xiannian Zi, Shixiong Yan, Tengfei Dou, Junjing Jia, Kun Wang, Changrong Ge · 2022 · Genes
  11. Differences in the intrinsic spatial dynamics of the chromatin contribute to cell differentiation
    She Zhang, Fangyuan Chen, İvet Bahar · 2019 · Nucleic Acids Research
  12. Single-cell technologies and analyses in hematopoiesis and hematological malignancies
    Ignacio Campillo‐Marcos, Damiana Álvarez‐Errico, Regina Antoni Alandes, Elisabetta Mereu, Manel Esteller · 2021 · Experimental Hematology
  13. Pbx4 limits heart size and fosters arch artery formation by partitioning second heart field progenitors and restricting proliferation
    Andrew Holowiecki, Kelsey M. Linstrum, Padmapriyadarshini Ravisankar, Kashish Chetal, Nathan Salomonis, Joshua S. Waxman · 2020 · Development
  14. Diversity of human NK cell developmental pathways defined by single-cell analyses
    Seungmae Seo, Emily Margaret Mace · 2021 · Current Opinion in Immunology
  15. Characterization of bone marrow heterogeneity in NK-AML (M4/M5) based on single-cell RNA sequencing
    Wenqi Wu, Zeyan Shi, Zhongyuan Tang, Huiqun Li, Xiaoke Huang, Xiaolin Liang, Jing Li, Yibin Yao, Weihua Zhao, Meiqing Wu et al. · 2023 · Experimental Hematology and Oncology
  16. Monosomy 7/del(7q) cause sensitivity to inhibitors of nicotinamide phosphoribosyltransferase in acute myeloid leukemia
    Samuli Eldfors, Joseph J Saad, Nemo Ikonen, Disha Malani, Markus J. V. Vähä-Koskela, Bjørn Tore Gjertsen, Mika Kontro, Kimmo Porkka, Caroline Akemi Heckman · 2024 · Blood Advances
  17. A transcriptomic based deconvolution framework for assessing differentiation stages and drug responses of AML
    Emin Onur Karakaslar, Jeppe F. Severens, Elena Sánchez‐López, Peter A. van Veelen, Mihaela Zlei, Jacques J. M. van Dongen, Annemarie M. Otte, Constantijn J.M. Halkes, Peter van Balen, Hendrik Veelken et al. · 2024 · npj Precision Oncology
  18. Quantitative and molecular differences distinguish adult human medullary and extramedullary haematopoietic stem and progenitor cell landscapes
    Nicole Mende, Hugo P. Bastos, Antonella Santoro, Kendig Sham, Krishnaa T. A. Mahbubani, Abbie Curd, Hitoshi Takizawa, Nicola K. Wilson, Bertie Göttgens, Kourosh Saeb‐Parsy et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  19. Human haematopoietic stem cells remember inflammatory stress
    Zeng, Andy G. X., Nagree, Murtaza S., Jakobsen, Niels Asger, Shah, Sayyam, Varesi, Angelica, Kang, Jasmine Ryu Won, Murison, Alex, Cheong, Jin-Gyu, Turkalj, Sven, Zhang, Xuan et al. · 2026 · Nature
  20. The Autoimmune Risk R262W Variant of the Adaptor SH2B3 Improves Survival in Sepsis
    Eric J. Allenspach, Nicholas J. Shubin, Karen M. Cerosaletti, Carmen R. Mikacenic, Jacquelyn A. Gorman, Matthew A. MacQuivey, Aaron B.I. Rosen, Andrew E. Timms, Michelle N. Wray-Dutra, Kerri Niino et al. · 2021 · The Journal of Immunology
  21. Nonlinear transcriptional responses to gradual modulation of transcription factor dosage
    Domingo, Júlia, Minaeva, Mariia, Morris, John A, Ghatan, Samuel, Ziosi, Marcello, Sanjana, Neville E, Lappalainen, Tuuli · 2024
  22. Germline POT1 Deregulation Can Predispose to Myeloid Malignancies in Childhood
    Pia Michler, Anne Schedel, Martha Witschas, Ulrike Anne Friedrich, Rabea Wagener, Juha Mehtonen, Triantafyllia Brozou, Maria Menzel, Carolin Walter, Dalileh Nabi et al. · 2021 · International Journal of Molecular Sciences
  23. Synchrotron-based characterization of arthroprosthetic CoCrMo particles in human bone marrow
    Janosch Schoon, Bernhard Hesse, Rémi Tucoulou, Sven Geißler, Melanie Ort, Georg N. Duda, Carsten Perka, Georgi Iwan Wassilew, Giorgio Perino, Anastasia Rakow · 2022 · Journal of Materials Science Materials in Medicine
  24. Decision level integration of unimodal and multimodal single cell data with scTriangulate
    Guangyuan Li, Baobao Song, Harinder Singh, V. B. Surya Prasath, H. Leighton Grimes, Nathan Salomonis · 2023 · Nature Communications
  25. Detailed characterization of the transcriptome of single B cells in mantle cell lymphoma suggesting a potential use for SOX4
    Simone Valentin Hansen, Marcus Høy Hansen, Oriane Cédile, Michael Boe Møller, Jacob Haaber, Niels Abildgaard, Charlotte Guldborg Nyvold · 2021 · Scientific Reports
  26. The Value of a Comprehensive Genomic Evaluation in Prenatal Diagnosis of Genetic Diseases: A Retrospective Study
    Fang Fu, Ru Li, Qiuxia Yu, Xiao Dang, Shujuan Yan, Hang Zhou, Ken Cheng, Ruibin Huang, You Wang, Yongling Zhang et al. · 2022 · Genes
  27. Sputum Transcriptomics Reveals FCN1+ Macrophage Activation in Mild Eosinophilic Asthma Compared to Non-Asthmatic Eosinophilic Bronchitis
    Wenzhi Zhan, Wei Luo, Yulong Zhang, Keheng Xiang, Xiaomei Chen, Shuirong Shen, Chuqing Huang, Tingting Xu, Wenbin Ding, Yuehan Chen et al. · 2024 · Allergy Asthma and Immunology Research
  28. Trisomy 8 Defines a Distinct Subtype of Myeloproliferative Neoplasms Driven by the MYC–Alarmin Axis
    Nicole D. Vincelette, Xiaoqing Yu, Andrew Tucker Kuykendall, Jungwon Moon, Siyuan Su, Chia‐Ho Cheng, Rinzine Sammut, Tiffany N. Razabdouski, Hai Vu Nguyen, Erika Adriana Eksioglu et al. · 2024 · Blood Cancer Discovery
  29. Neural G0: a quiescent-like state found in neuroepithelial-derived cells and glioma
    Heather M. Feldman, Chad M. Toledo, Sonali Arora, Pia Hoellerbauer, Philip D. Corrin, Lucas M. Carter, Megan Kufeld, Hamid Bolouri, Ryan Basom, Jeffrey J. Delrow et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  30. Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cells
    Loïc Fiévet, Nicolas Espagnolle, Daniela Gerovska D, David Bernard, Charlotte Syrykh, Camille Laurent, Pierre Layrolle, Julien De Lima, Arthur Justo, Nicolas Reina et al. · 2023 · Stem Cell Research & Therapy
  31. Identification of leukemia-enriched signature through the development of a comprehensive pediatric single-cell atlas
    Hope Mumme, Chenbin Huang, Denis J. Ohlstrom, Mojtaba Bakhtiari, Sunil S. Raikar, Deborah DeRyckere, Muna D. Qayed, Sharon M. Castellino, Daniel S. Wechsler, Christopher C. Porter et al. · 2025 · Nature Communications
  32. Single-Cell Technologies to Decipher the Immune Microenvironment in Myeloid Neoplasms: Perspectives and Opportunities
    Chiara Caprioli, Iman Nazari, Sara Milovanovic, Pier Giuseppe Pelicci · 2022 · Frontiers in Oncology
  33. SplicingFactory—splicing diversity analysis for transcriptome data
    Benedek Dankó, Péter Szikora, Tamás Pór, Alexa Szeifert, Endre Sebestyén · 2021 · Bioinformatics
  34. Fluorescence microscopy tensor imaging representations for large-scale dataset analysis
    Claudio Vinegoni, Paolo Fumene Feruglio, Gabriel Courties, Stephen Schmidt, Maarten Hulsmans, Sungon Lee, Rui Wang, David E. Sosnovik, Matthias Nahrendorf, Ralph Weissleder · 2020 · Scientific Reports
  35. Deciphering the effect of UM171 on human hematopoietic progenitor cell fate through clonal analysis
    Patrick Coulombe, E. Tomellini, J. Chagraoui, N. Mayotte, Guy Sauvageau · 2025 · Nature Communications
  36. A highland-adaptation variant near MCUR1 reduces its transcription and attenuates erythrogenesis in Tibetans
    Jie Ping, Xinyi Liu, Yiming Lu, Cheng Quan, Pengcheng Fan, Hao Lu, Qi Li, Cuiling Wang, Zheng Zhang, Mengyu Liu et al. · 2025 · Cell Genomics
  37. Allelic bias contributes to heterogeneous phenotypes of NK cell deficiency
    Seungmae Seo, Yong‐Oon Ahn, Sagar L. Patil, Jacqueline Armetta, Madrikha Daphnee Saturne, Everardo Hegewisch-Solloa, Nicole C. Guilz, Achchhe Patel, Barbara Corneo, Malgorzata Borowiak et al. · 2025 · Cell Reports
  38. Single-cell views of the Plasmodium life cycle
    Eliana Real, Liliana Mâncio-Silva · 2022 · Trends in Parasitology
  39. Single cell characterization of B-lymphoid differentiation and leukemic cell states during chemotherapy in ETV6-RUNX1 positive pediatric leukemia identifies drug-targetable transcription factor activities
    Juha Mehtonen, Susanna Teppo, Mari Lahnalampi, Aleksi Kokko, Riina Kaukonen, Laura Oksa, Maria Bouvy‐Liivrand, Alena Malyukova, Saara Laukkanen, Petri I. Mäkinen et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  40. Clonal hematopoiesis of indeterminate potential, DNA methylation, and risk for coronary artery disease
    Md Mesbah Uddin, Ngoc Quynh Nguyen, Bing Yu, Jennifer A. Brody, Akhil Pampana, Tetsushi Nakao, Myriam Fornage, Jan Bressler, Nona Sotoodehnia, Joshua S. Weinstock et al. · 2022 · Research Square
  41. Nonlinear transcriptional responses to gradual modulation of transcription factor dosage
    Júlia Domingo, Mariia Minaeva, John A. Morris, Samuel Ghatan, Marcello Ziosi, Neville E. Sanjana, Tuuli Lappalainen · 2024 · eLife
  42. A new model of human lymphopoiesis across development and aging
    Kutaiba Alhaj Hussen, Valentine Louis, Bruno Canque · 2024 · Trends in Immunology
  43. Comparative single-cell transcriptional and proteomic atlas of clinical-grade injectable mesenchymal source tissues
    Severin Ruoss, Chanond A. Nasamran, Scott T. Ball, Jeffrey L. Chen, Kenneth Halter, Kelly Amanda Bruno, Thomas C. Whisenant, Jesal N. Parekh, Shanelle N. Dorn, Mary C. Esparza et al. · 2024 · Science Advances
  44. Approaches for Benchmarking Single-Cell Gene Regulatory Network Methods
    Karamveer Karamveer, Yasin Uzun · 2024 · Bioinformatics and Biology Insights
  45. Distinct routes of clonal progression in SF3B1-mutant myelodysplastic syndromes
    Martina Sarchi, Courtnee A. Clough, Anna Gallì, Cristina Picone, Beatrice Ferrari, Edie I. Crosse, Laura D. Baquero Galvis, Claudia Fiducioso, Nelli Aydinyan, John Philip Creamer et al. · 2025 · Blood Advances
  46. Human autoimmunity at single cell resolution in aplastic anemia before and after effective immunotherapy
    Zhijie Wu, Shouguo Gao, Xingmin Feng, Haoran Li, Nicolas Sompairac, Shirin Jamshidi, Desmond Choy, Rita Antunes Dos Reis, Qingyan Gao, Sachiko Kajigaya et al. · 2025 · Nature Communications
  47. Bone marrow tumor microenvironment profiling predicts distinct immunosuppressive phenotypes and immunotherapy potential in AML patients
    Leslie Correia da Cruz, Yejin Lee, Ji Yeon Paik, Jeonghye Park, Marc F. Diederich, Claudia Cerella · 2025 · Biomedicine & Pharmacotherapy
  48. Unraveling NK cell heterogeneity through single-cell sequencing: insights from physiological and tumor contexts for clinical applications
    Mingxin Shen, Yutong Liu, Liang Shao, Meng Qu, Shixin Song, Wei Sun, Hao Zhang · 2025 · Frontiers in Immunology
  49. Single-cell classification, analysis, and its application using deep learning techniques
    R. Premkumar, Arthi Srinivasan, Kanika Devi, M Deepika, E Gaayathry, Pramod Jadhav, Abhishek Futane, Vigneswaran Narayanamurthy · 2024 · Biosystems
  50. cellHarmony: Cell-level matching and holistic comparison of single-cell transcriptomes
    Erica AK DePasquale, Phillip Dexheimer, Daniel Schnell, Kyle Ferchen, Stuart Hay, Íñigo Valiente-Alandí, Burns C. Blaxall, H. Leighton Grimes, Nathan Salomonis · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  51. Decoding functional hematopoietic progenitor cells in the adult human lung
    Catharina Conrad, Mélia Magnen, Jessica L. Tsui, Harrison Wismer, Mohammad Naser, Urmila Venkataramani, Bushra Samad, Simon J. Cleary, Longhui Qiu, Jennifer J. Tian et al. · 2024 · Research Square
  52. Non-linear transcriptional responses to gradual modulation of transcription factor dosage
    Domingo, Júlia, Minaeva, Mariia, Morris, John A, Ghatan, Sam, Ziosi, Marcello, Sanjana, Neville E, Lappalainen, Tuuli · 2024
  53. Smarcd1 subunit of SWI/SNF chromatin-remodeling complexes collaborates with E2a to promote murine lymphoid specification
    Pierre Priam, Veneta Krasteva, Philippe Rousseau, Alexandre Polsinelli, Laurence Côté, Inès Desanlis, Azer Farah, Vincent‐Philippe Lavallée, Marie Kmita, Julie A. Lessard · 2024 · Developmental Cell
  54. Single-cell multiomic atlas of healthy pediatric bone marrow reveals age-dependent differences in lineage differentiation driven by stromal signaling
    Evelyn S. Hanemaaijer, Konradin F. Müskens, Ireen J. Kal, Li‐Ting Chen, Brigit M. te Pas, Patrycja Fryzik, Nina Epskamp, Merel van der Meulen, Aleksandra Balwierz, Akshaya Keerthi Saikumar Jayalatha et al. · 2026 · Nature Immunology
  55. Apoliprotein E-mediated ferroptosis controls cellular proliferation in chronic lymphocytic leukemia
    Federica Nardi, Rosita Del Prete, Roberta Drago, Anthea Di Rita, Francesco Edoardo Vallone, Sara Ciofini, Margherita Malchiodi, Laura Pezzella, Laura Tinti, Vittoria Cicaloni et al. · 2024 · Leukemia
  56. IL1RAP is an immunotherapeutic target for normal karyotype triple-mutated acute myeloid leukemia
    Arnaud Métois, Marie-Ève Bordeleau, Louis Thérêt, Azadeh Hajmirza, Ossama Moujaber, Jean-François Spinella, Jalila Chagraoui, Nadine Mayotte, Isabel Boivin, Eric Olivier Audemard et al. · 2025 · Biomarker Research
  57. Characterization of MAIT cells in glioblastoma reveals a potential immunosuppressive role through a MAIT-neutrophil axis
    Seketoulie Keretsu, Taijun Hana, Alex Lee, Noémi Kedei, Nargis Malik, Hye Min Kim, Jo Spurgeon, Guzal Khayrullina, Benjamin Ruf, Ayaka Hara et al. · 2025 · Neuro-Oncology Advances
  58. Molecular Plasticity Results in Oncofetal Reprogramming and Therapeutic Vulnerabilities in Juvenile Myelomonocytic Leukemia
    Mark Hartmann, Maximilian Schönung, Jovana Rajak, Valentin Maurer, Ling Hai, Katharina Bauer, Mariam Hakobyan, Sina Stäble, Jens Langstein, Laura Jardine et al. · 2025 · Blood Cancer Discovery
  59. The role of proliferating stem‐like plasma cells in relapsed or refractory multiple myeloma: Insights from single‐cell RNA sequencing and proteomic analysis
    Jiadai Xu, Panpan Li, Yawen Wang, Jing Li, Bei Xu, Jiangyan Zhao, Chen Chen, Shiyang Gu, Chen Ding, Peng Liu · 2024 · British Journal of Haematology
  60. S100A8/A9 high-expression macrophages mediate renal tubular epithelial cell damage in acute kidney injury following acute type A aortic dissection surgery
    Xiujuan Cai, Xin Li, Jian Shi, Lu Tang, Jie Wu Yang, Ronghuang Yu, Zhigang Wang, Dongjin Wang · 2025 · Frontiers in Molecular Biosciences
  61. From helping to regulating – A transcriptomic profile of Ifng+ Il10+ Il21+ Cd4+ Th1 cells indicates their role in regulating inflammation during experimental trypanosomosis
    Hang Thi Thu Nguyen, Stefan Magez, Magdalena Radwanska · 2023 · Frontiers in Tropical Diseases
  62. Comprehensive molecular and functional analysis of NUTM1 -rearranged leukemia
    Koutarou Nishimura, Tomoya Isobe, Tsukasa Shigehiro, Masaki Nomura, Weijia Zang, Muran Xiao, Wenjuan Liao, Yui Koike, Akira Nishimura, Aiko Sato‐Otsubo et al. · 2025 · Blood
  63. A mechanism to initiate emergency type 2 myelopoiesis
    Alexandre Fagnan, Cristina Di Genua, Yiran Meng, Roy Drissen, Zishan Zhang, Bowen Zhang, Padraic G. Fallon, Vassilis Pachnis, Erika J. Mancini, Fränze Progatzky et al. · 2026 · Nature
  64. Failure of metabolic checkpoint control during late-stage granulopoiesis drives neutropenia in reticular dysgenesis
    Wenqing Wang, Martin Arreola Villanueva, Thomas P. Mathews, Andrew DeVilbiss, Zhiyu Zhao, Misty S. Martin-Sandoval, Abdulvasey Mohammed, Giorgia Benegiamo, Avni Awani, Ludger J.E. Goeminne et al. · 2024 · Blood
  65. Alterations in the humoral immunophenotype in sickle cell disease
    Emily Vistica Sampino, Dennis M. Bonal, Anna Dorota Chorzalska, J. Morgan, L. Nguyen, Chenchen Yu, A. Rodriguez, Roberta De Vito, Salley G. Pels, Philippa G. Sprinz et al. · 2025 · British Journal of Haematology
  66. HiJAKing the hematopoietic system: a low-frequency JAK2V617F clone drives myeloproliferative neoplasm pathology
    Dennis M. Bonal, Alissa Oakes, Anna Dorota Chorzalska, Makayla R Pardo, Max Petersen, Michael Y. Clarke, Seo-Ho Lee, Adam J. Olszewski, Diana Olguta Treaba, John Leonard Reagan et al. · 2025 · Blood
  67. Maladaptive emergency granulopoiesis predicts poor outcomes in patients hospitalized with decompensated cirrhosis
    Ferrán Aguilar, Juan José Lozano, Joan Clària, Sara Noemi Reinartz Groba, Mathis Richter, Laura Jiménez-Gracia, Pierre de la Grange, Ariane Jolly, Michael Praktiknjo, Cristina Sánchez-Garrido et al. · 2025 · Journal of Hepatology
  68. Developmental interplay between transcriptional alterations and a targetable cytokine signaling dependency in pediatric ETO2::GLIS2 leukemia
    Verónica Alonso-Pérez, Klaudia Galant, Fabien Boudia, Elie Robert, Zakia Aid, Laurent Renou, Vilma Barroca, Saryiami Devanand, Loélia Babin, V. Rouiller et al. · 2024 · Molecular Cancer
  69. Orchestration of human multi‐lineage hematopoietic cell development by humanized in vivo bone marrow models
    Laurent Renou, Wenjie Sun, Chloé Friedrich, Klaudia Galant, Cécile Conrad, Anne Consalus, Evelia Plantier, Katharina Schallmoser, Linda M. Krisch, Vilma Barroca et al. · 2025 · HemaSphere
  70. Single-cell and clonal analysis of AL amyloidosis plasma cells and their bone marrow microenvironment
    Nicolas A. Gort-Freitas, Maria Moscvin, Matteo Da Vià, Francesca Lazzaroni, Alice Nevone, Sam Sadigh, Samuel Boullt, Benjamin Evans, Tianzeng Chen, Tanya T. Karagiannis et al. · 2025 · Blood
  71. Transcriptional profiling directs the classification of acute leukemias of ambiguous lineage into AML, B‐ALL, or T‐ALL
    Roger Mulet‐Lazaro, Anikó Sijs‐Szabó, Remco Michiel Hoogenboezem, Stanley van Herk, Carla Exalto, Jasper E. Koenders, Patricia G. Hoogeveen, François G. Kavelaars, Anita M. Schelen, Willemijn van den Ancker et al. · 2025 · HemaSphere
  72. CAMML with the Integration of Marker Proteins (ChIMP)
    Courtney T. Schiebout, Hildreth Robert Frost · 2022 · Bioinformatics
  73. E-cadherin/β-catenin expression is conserved in human and rat erythropoiesis and marks stress erythropoiesis
    Rosa A. Krimpenfort, Santhe Amber van der Meulen, Han J. M. P. Verhagen, Michel Driessen, Galina E. Filonova, Mark Hoogenboezem, Emile van den Akker, Marieke v. Lindern, Micha Nethe · 2023 · Blood Advances
  74. CRISPR-Cas9 Screens Reveal Genes Regulating a G0-Like State in Human Neural Progenitors
    Heather M. Feldman, Chad M. Toledo, Sonali Arora, Pia Hoellerbauer, Philip D. Corrin, Lucas M. Carter, Megan Kufeld, Hamid Bolouri, Ryan Basom, Jeffrey J. Delrow et al. · 2018 · SSRN Electronic Journal
  75. Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics
    Dylan Kotliar, Aaron E. Lin, James Logue, Travis K. Hughes, Nadine M. Khoury, Siddharth S. Raju, Marc H. Wadsworth, Han M. Chen, Jonathan R. Kurtz, Bonnie Dighero-Kemp et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  76. SWANS: A highly configurable analysis pipeline for single-cell and single-nucleus RNA-sequencing data
    Katherine Beigel, Eric K. Wafula, Dana V. Mitchell, Steven J. Pastor, Michelle N. Gong, Robert O. Heuckeroth, Julio C. Ricarte‐Filho, Aime T. Franco, Erin Renée Reichenberger · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  77. Type 1 interferon perturbates clonal competition by reshaping human blood development
    Lama, Chhiring, Isakov, Danielle, Rosenberg, Shira, Quijada-Álamo, Miguel, Saurty-Seerunghen, Mirca S., Moein, Sara, Nozais, Mathis, Abera, Tsega-Ab, Sakaguchi, Olivia, Totwani, Mansi et al. · 2026 · Nature Genetics
  78. The Clinical and Molecular Characterization of Distinct Subtypes in Adult T Cell Acute Lymphoblastic Leukemia
    Hong Yu, Wenbing Liu, Junping Zhang, Leling Xie, Anli Lai, Zheng Tian, Kejing Tang, Haiyan Xing, Ying Wang, Hui Wei et al. · 2025 · Cancer Science
  79. Longitudinal single-cell analysis reveals treatment-resistant stem and mast cells with potential treatments for pediatric AML
    Denis J. Ohlstrom, Mojtaba Bakhtiari, Hope Mumme, Marina E. Michaud, Alejandro de Janon, Deborah DeRyckere, Katherine E. Ferguson, Frank Chien, William Pilcher, Sarthak Satpathy et al. · 2025 · Leukemia
  80. Profiling of miRNAs and their interfering targets in peripheral blood mononuclear cells from patients with chronic myeloid leukaemia
    Sheng‐Cheng Wu, Shiue‐Wei Lai, Xin-Jie Lu, Hsing-Fan Lai, Yuguang Chen, Po‐Huang Chen, Ching‐Liang Ho, Yi‐Ying Wu, Yi‐Lin Chiu · 2023 · Frontiers in Oncology
  81. Considering the Cellular Landscape in Marrow Stimulation Techniques for Cartilage Repair
    Maddie Hasson, Lorenzo M. Fernandes, Hanna Solomon, Tristan Pepper, Nicholas Huffman, Saitheja A. Pucha, Jason Tyler Bariteau, Jarred M. Kaiser, Jay Patel · 2024 · Cells Tissues Organs
  82. Transcriptional landscape of canine hematopoiesis and cross-species comparisons revealed by single-cell RNA sequencing
    Dylan T. Ammons, Christopher Contursi, McKenzie Olsen, Janna A. Yoshimoto, Eileen Owens, Macallister Harris, Austin E. Gillen, Steven Dow, Anne C. Avery, R. Adam Harris · 2026 · Scientific Reports
  83. CEA cell adhesion molecule 5 enriches functional human hematopoietic stem cells capable of long-term multi-lineage engraftment
    Kuiying Ma, Xuan Wang, Linjie Wu, Lingling Yu, Jinhui Ye, Xueling Li, Lili Geng, Zhongyu Shi, Huihui Yang, Xijuan Zhang et al. · 2023 · iScience
  84. Single-cell genomics-based immune and disease monitoring in blood malignancies
    Anja C. Rathgeber, Leif S. Ludwig, Livius Penter · 2024 · Clinical Hematology International
  85. SIngle cell level Genotyping Using scRna Data (SIGURD)
    Martin Graßhoff, Milena Kalmer, Nicolas Chatain, Kim Kricheldorf, Angela Maurer, Ralf Weiskirchen, Steffen Koschmieder, Ivan G. Costa · 2024 · Briefings in Bioinformatics
  86. Aberrant splicing of MBD1 reshapes the epigenome to drive convergent myeloerythroid defects in MDS
    He Tian Chen, Pratik Joshi, Séverine Cathelin, Soheil Jahangiri, Saeer A Adeel, Joshua Xu, Emily Tsao, Yulin Mo, David Kealy, Adam Dowle et al. · 2026 · Blood
  87. HSCs/MPPs as cells of origin with altered differentiation hierarchy impairing immunomicroenvironment in PML::RARA and CBFα/β fusion AML
    Niu Qiao, Zixuan Wang, Yu-Liang Zhang, Liu-Qing-Qing Zhang, Hong-Ming Zhu, Xiang-Qin Weng, Yongmei Zhu, Wenjie Cheng, Jianfeng Li, Lu Jiang et al. · 2026 · Proceedings of the National Academy of Sciences
  88. Single-cell and spatial transcriptomics unveil myeloid–lymphoid cross talk and the dermal immune niche underlying palmoplantar pustulosis
    Hanjae Lee, Juyoung Lee, Hyeok Ahn, Kyunghyuk Park, Bukyung Cha, Cheol Lee, Ohsang Kwon, Seong Jin Jo, Jong-Il Kim · 2026 · Journal of Allergy and Clinical Immunology
  89. IL1RAP Antibody–Drug Conjugates Potently Target Primary and Metastatic Diseases in Multiple Oncofusion-Driven Cancers
    Hai‐Feng Zhang, Edouard De Dreuzy, Yue Z. Huang, Seungmin Shin, Qingfeng Huang, Alberto Delaidelli, Xiaqiu Yang, Virginia Adamiak, Andrew G. Lytle, Aarzoo Arzoo et al. · 2026 · Cancer Discovery
  90. Data-driven flow cytometry classification of blast differentiation in older patients with acute myeloid leukemia
    Catia Patricia Simoes, Carmen González, François Vergez, Audrey Sarry, Sarah Bertoli, Beñat Ariceta, David Martínez‐Cuadrón, Juan Bergua, Susana Vives, Lorenzo Algarra et al. · 2024 · Blood Neoplasia
  91. Deciphering the complex clonal heterogeneity of polycythemia vera and the response to interferon alfa
    Milena Kalmer, Martin Graßhoff, Tiago Maié, Kristina Pannen, Marcelo A. S. Toledo, Margherita Vieri, Kathrin Olschok, Rebecca Lemanzyk, Jelena Lazarevic, Baerbel Junge et al. · 2025 · Blood Advances
  92. Pollock: fishing for cell states
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  93. Single-Cell Analysis of Hematopoietic Stem Cells
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