The Human Cell Atlas bone marrow single-cell interactive web portal
Hay, Stuart B., Ferchen, Kyle, Chetal, Kashish, Grimes, H. Leighton, Salomonis, Nathan·2018·Experimental Hematology
Cited by (269)
Items 101–200 of 269
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- HOXA9/IRX1 expression pattern defines two subgroups of infant MLL-AF4-driven acute lymphoblastic leukemiaVasiliki Symeonidou, Katrin Ottersbach · 2020 · Experimental Hematology
- Abcc1 and Ggt5 support lymphocyte guidance through export and catabolism of S -geranylgeranyl- l -glutathioneAntonia E. Gallman, Finn D. Wolfreys, David N. Nguyen, Moriah Sandy, Ying Xu, Jinping An, Zhongmei Li, Alexander Marson, Erick Lu, Jason G. Cyster · 2021 · Science Immunology
- Single cell multi-omic reference atlases of non-human primate immune tissues reveals CD102 as a biomarker for long-lived plasma cellsRyan P. Staupe, Kenneth E. Lodge, Nithya Thambi, David Toole, Alex M. Tamburino, Dan Chang, Bonnie J. Howell, Daria J. Hazuda, Kalpit A. Vora, Nicole Sullivan · 2022 · Communications Biology
- Integrated single cell analysis shows chronic alcohol drinking disrupts monocyte differentiation in the bone marrowSloan A. Lewis, Brianna M. Doratt, Qi Qiao, Madison B. Blanton, Kathleen A. Grant, Ilhem Messaoudi · 2023 · Stem Cell Reports
- Decoding Susceptibility to Respiratory Viral Infections and Asthma Inception in ChildrenJames F. Read, Anthony Bosco · 2020 · International Journal of Molecular Sciences
- Mutated clones driving leukemic transformation are already detectable at the single-cell level in CD34-positive cells in the chronic phase of primary myelofibrosisSandra Parenti, Sebastiano Rontauroli, Chiara Carretta, Selene Mallia, Elena Genovese, Chiara Chiereghin, Clelia Peano, Lara Tavernari, Elisa Bianchi, Sebastian Fantini et al. · 2021 · npj Precision Oncology
- Knowledge-based classification of fine-grained immune cell types in single-cell RNA-Seq dataXuan Liu, Sara J.C. Gosline, Lance T. Pflieger, Pierre Wallet, Archana Iyer, Justin Guinney, Andrea H. Bild, Jeffrey T. Chang · 2021 · Briefings in Bioinformatics
- Advances in Single-Cell Sequencing Technology and Its Application in Poultry ScienceYong Liu, Shuangmin Liang, Bo Wang, Jinbo Zhao, Xiannian Zi, Shixiong Yan, Tengfei Dou, Junjing Jia, Kun Wang, Changrong Ge · 2022 · Genes
- Differences in the intrinsic spatial dynamics of the chromatin contribute to cell differentiationShe Zhang, Fangyuan Chen, İvet Bahar · 2019 · Nucleic Acids Research
- Single-cell technologies and analyses in hematopoiesis and hematological malignanciesIgnacio Campillo‐Marcos, Damiana Álvarez‐Errico, Regina Antoni Alandes, Elisabetta Mereu, Manel Esteller · 2021 · Experimental Hematology
- Pbx4 limits heart size and fosters arch artery formation by partitioning second heart field progenitors and restricting proliferationAndrew Holowiecki, Kelsey M. Linstrum, Padmapriyadarshini Ravisankar, Kashish Chetal, Nathan Salomonis, Joshua S. Waxman · 2020 · Development
- Diversity of human NK cell developmental pathways defined by single-cell analysesSeungmae Seo, Emily Margaret Mace · 2021 · Current Opinion in Immunology
- Characterization of bone marrow heterogeneity in NK-AML (M4/M5) based on single-cell RNA sequencingWenqi Wu, Zeyan Shi, Zhongyuan Tang, Huiqun Li, Xiaoke Huang, Xiaolin Liang, Jing Li, Yibin Yao, Weihua Zhao, Meiqing Wu et al. · 2023 · Experimental Hematology and Oncology
- Monosomy 7/del(7q) cause sensitivity to inhibitors of nicotinamide phosphoribosyltransferase in acute myeloid leukemiaSamuli Eldfors, Joseph J Saad, Nemo Ikonen, Disha Malani, Markus J. V. Vähä-Koskela, Bjørn Tore Gjertsen, Mika Kontro, Kimmo Porkka, Caroline Akemi Heckman · 2024 · Blood Advances
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- Quantitative and molecular differences distinguish adult human medullary and extramedullary haematopoietic stem and progenitor cell landscapesNicole Mende, Hugo P. Bastos, Antonella Santoro, Kendig Sham, Krishnaa T. A. Mahbubani, Abbie Curd, Hitoshi Takizawa, Nicola K. Wilson, Bertie Göttgens, Kourosh Saeb‐Parsy et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Human haematopoietic stem cells remember inflammatory stressZeng, Andy G. X., Nagree, Murtaza S., Jakobsen, Niels Asger, Shah, Sayyam, Varesi, Angelica, Kang, Jasmine Ryu Won, Murison, Alex, Cheong, Jin-Gyu, Turkalj, Sven, Zhang, Xuan et al. · 2026 · Nature
- The Autoimmune Risk R262W Variant of the Adaptor SH2B3 Improves Survival in SepsisEric J. Allenspach, Nicholas J. Shubin, Karen M. Cerosaletti, Carmen R. Mikacenic, Jacquelyn A. Gorman, Matthew A. MacQuivey, Aaron B.I. Rosen, Andrew E. Timms, Michelle N. Wray-Dutra, Kerri Niino et al. · 2021 · The Journal of Immunology
- Nonlinear transcriptional responses to gradual modulation of transcription factor dosageDomingo, Júlia, Minaeva, Mariia, Morris, John A, Ghatan, Samuel, Ziosi, Marcello, Sanjana, Neville E, Lappalainen, Tuuli · 2024
- Germline POT1 Deregulation Can Predispose to Myeloid Malignancies in ChildhoodPia Michler, Anne Schedel, Martha Witschas, Ulrike Anne Friedrich, Rabea Wagener, Juha Mehtonen, Triantafyllia Brozou, Maria Menzel, Carolin Walter, Dalileh Nabi et al. · 2021 · International Journal of Molecular Sciences
- Synchrotron-based characterization of arthroprosthetic CoCrMo particles in human bone marrowJanosch Schoon, Bernhard Hesse, Rémi Tucoulou, Sven Geißler, Melanie Ort, Georg N. Duda, Carsten Perka, Georgi Iwan Wassilew, Giorgio Perino, Anastasia Rakow · 2022 · Journal of Materials Science Materials in Medicine
- Decision level integration of unimodal and multimodal single cell data with scTriangulateGuangyuan Li, Baobao Song, Harinder Singh, V. B. Surya Prasath, H. Leighton Grimes, Nathan Salomonis · 2023 · Nature Communications
- Detailed characterization of the transcriptome of single B cells in mantle cell lymphoma suggesting a potential use for SOX4Simone Valentin Hansen, Marcus Høy Hansen, Oriane Cédile, Michael Boe Møller, Jacob Haaber, Niels Abildgaard, Charlotte Guldborg Nyvold · 2021 · Scientific Reports
- The Value of a Comprehensive Genomic Evaluation in Prenatal Diagnosis of Genetic Diseases: A Retrospective StudyFang Fu, Ru Li, Qiuxia Yu, Xiao Dang, Shujuan Yan, Hang Zhou, Ken Cheng, Ruibin Huang, You Wang, Yongling Zhang et al. · 2022 · Genes
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- Trisomy 8 Defines a Distinct Subtype of Myeloproliferative Neoplasms Driven by the MYC–Alarmin AxisNicole D. Vincelette, Xiaoqing Yu, Andrew Tucker Kuykendall, Jungwon Moon, Siyuan Su, Chia‐Ho Cheng, Rinzine Sammut, Tiffany N. Razabdouski, Hai Vu Nguyen, Erika Adriana Eksioglu et al. · 2024 · Blood Cancer Discovery
- Neural G0: a quiescent-like state found in neuroepithelial-derived cells and gliomaHeather M. Feldman, Chad M. Toledo, Sonali Arora, Pia Hoellerbauer, Philip D. Corrin, Lucas M. Carter, Megan Kufeld, Hamid Bolouri, Ryan Basom, Jeffrey J. Delrow et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cellsLoïc Fiévet, Nicolas Espagnolle, Daniela Gerovska D, David Bernard, Charlotte Syrykh, Camille Laurent, Pierre Layrolle, Julien De Lima, Arthur Justo, Nicolas Reina et al. · 2023 · Stem Cell Research & Therapy
- Identification of leukemia-enriched signature through the development of a comprehensive pediatric single-cell atlasHope Mumme, Chenbin Huang, Denis J. Ohlstrom, Mojtaba Bakhtiari, Sunil S. Raikar, Deborah DeRyckere, Muna D. Qayed, Sharon M. Castellino, Daniel S. Wechsler, Christopher C. Porter et al. · 2025 · Nature Communications
- Single-Cell Technologies to Decipher the Immune Microenvironment in Myeloid Neoplasms: Perspectives and OpportunitiesChiara Caprioli, Iman Nazari, Sara Milovanovic, Pier Giuseppe Pelicci · 2022 · Frontiers in Oncology
- SplicingFactory—splicing diversity analysis for transcriptome dataBenedek Dankó, Péter Szikora, Tamás Pór, Alexa Szeifert, Endre Sebestyén · 2021 · Bioinformatics
- Fluorescence microscopy tensor imaging representations for large-scale dataset analysisClaudio Vinegoni, Paolo Fumene Feruglio, Gabriel Courties, Stephen Schmidt, Maarten Hulsmans, Sungon Lee, Rui Wang, David E. Sosnovik, Matthias Nahrendorf, Ralph Weissleder · 2020 · Scientific Reports
- Deciphering the effect of UM171 on human hematopoietic progenitor cell fate through clonal analysisPatrick Coulombe, E. Tomellini, J. Chagraoui, N. Mayotte, Guy Sauvageau · 2025 · Nature Communications
- A highland-adaptation variant near MCUR1 reduces its transcription and attenuates erythrogenesis in TibetansJie Ping, Xinyi Liu, Yiming Lu, Cheng Quan, Pengcheng Fan, Hao Lu, Qi Li, Cuiling Wang, Zheng Zhang, Mengyu Liu et al. · 2025 · Cell Genomics
- Allelic bias contributes to heterogeneous phenotypes of NK cell deficiencySeungmae Seo, Yong‐Oon Ahn, Sagar L. Patil, Jacqueline Armetta, Madrikha Daphnee Saturne, Everardo Hegewisch-Solloa, Nicole C. Guilz, Achchhe Patel, Barbara Corneo, Malgorzata Borowiak et al. · 2025 · Cell Reports
- Single-cell views of the Plasmodium life cycleEliana Real, Liliana Mâncio-Silva · 2022 · Trends in Parasitology
- Single cell characterization of B-lymphoid differentiation and leukemic cell states during chemotherapy in ETV6-RUNX1 positive pediatric leukemia identifies drug-targetable transcription factor activitiesJuha Mehtonen, Susanna Teppo, Mari Lahnalampi, Aleksi Kokko, Riina Kaukonen, Laura Oksa, Maria Bouvy‐Liivrand, Alena Malyukova, Saara Laukkanen, Petri I. Mäkinen et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Clonal hematopoiesis of indeterminate potential, DNA methylation, and risk for coronary artery diseaseMd Mesbah Uddin, Ngoc Quynh Nguyen, Bing Yu, Jennifer A. Brody, Akhil Pampana, Tetsushi Nakao, Myriam Fornage, Jan Bressler, Nona Sotoodehnia, Joshua S. Weinstock et al. · 2022 · Research Square
- Nonlinear transcriptional responses to gradual modulation of transcription factor dosageJúlia Domingo, Mariia Minaeva, John A. Morris, Samuel Ghatan, Marcello Ziosi, Neville E. Sanjana, Tuuli Lappalainen · 2024 · eLife
- A new model of human lymphopoiesis across development and agingKutaiba Alhaj Hussen, Valentine Louis, Bruno Canque · 2024 · Trends in Immunology
- Comparative single-cell transcriptional and proteomic atlas of clinical-grade injectable mesenchymal source tissuesSeverin Ruoss, Chanond A. Nasamran, Scott T. Ball, Jeffrey L. Chen, Kenneth Halter, Kelly Amanda Bruno, Thomas C. Whisenant, Jesal N. Parekh, Shanelle N. Dorn, Mary C. Esparza et al. · 2024 · Science Advances
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- Distinct routes of clonal progression in SF3B1-mutant myelodysplastic syndromesMartina Sarchi, Courtnee A. Clough, Anna Gallì, Cristina Picone, Beatrice Ferrari, Edie I. Crosse, Laura D. Baquero Galvis, Claudia Fiducioso, Nelli Aydinyan, John Philip Creamer et al. · 2025 · Blood Advances
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- Unraveling NK cell heterogeneity through single-cell sequencing: insights from physiological and tumor contexts for clinical applicationsMingxin Shen, Yutong Liu, Liang Shao, Meng Qu, Shixin Song, Wei Sun, Hao Zhang · 2025 · Frontiers in Immunology
- Single-cell classification, analysis, and its application using deep learning techniquesR. Premkumar, Arthi Srinivasan, Kanika Devi, M Deepika, E Gaayathry, Pramod Jadhav, Abhishek Futane, Vigneswaran Narayanamurthy · 2024 · Biosystems
- cellHarmony: Cell-level matching and holistic comparison of single-cell transcriptomesErica AK DePasquale, Phillip Dexheimer, Daniel Schnell, Kyle Ferchen, Stuart Hay, Íñigo Valiente-Alandí, Burns C. Blaxall, H. Leighton Grimes, Nathan Salomonis · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Decoding functional hematopoietic progenitor cells in the adult human lungCatharina Conrad, Mélia Magnen, Jessica L. Tsui, Harrison Wismer, Mohammad Naser, Urmila Venkataramani, Bushra Samad, Simon J. Cleary, Longhui Qiu, Jennifer J. Tian et al. · 2024 · Research Square
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- Smarcd1 subunit of SWI/SNF chromatin-remodeling complexes collaborates with E2a to promote murine lymphoid specificationPierre Priam, Veneta Krasteva, Philippe Rousseau, Alexandre Polsinelli, Laurence Côté, Inès Desanlis, Azer Farah, Vincent‐Philippe Lavallée, Marie Kmita, Julie A. Lessard · 2024 · Developmental Cell
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- Pollock: fishing for cell statesErik P. Storrs, Daniel Cui Zhou, Michael C. Wendl, Matthew A. Wyczalkowski, Alla Y. Karpova, Liang-Bo Wang, Yize Li, Austin N. Southard-Smith, Reyka G. Jayasinghe, Lijun Yao et al. · 2022 · Bioinformatics Advances
- Single-Cell Analysis of Hematopoietic Stem CellsKatherine Sturgess, Fernando J. Calero‐Nieto, Berthold Göttgens, Nicola K. Wilson · 2021 · Methods in molecular biology
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- Single cell guided deconvolution of bulk transcriptomics recapitulates differentiation stages of acute myeloid leukemia and predicts drug responseEmin Onur Karakaslar, Jeppe F. Severens, Elena Sánchez‐López, Peter A. van Veelen, Mihaela Zlei, Jacques J. M. van Dongen, Annemarie M. Otte, Constantijn J.M. Halkes, Peter van Balen, Hendrik Veelken et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
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