The Human Cell Atlas bone marrow single-cell interactive web portal

Hay, Stuart B., Ferchen, Kyle, Chetal, Kashish, Grimes, H. Leighton, Salomonis, Nathan·2018·Experimental Hematology
DOI 10.1016/j.exphem.2018.09.004

Cited by (269)

Items 201–269 of 269

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  4. RUNX1 haploinsufficiency causes a marked deficiency of megakaryocyte-biased hematopoietic progenitor cells: Mechanistic studies and drug correction
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  5. Hematopoietic differentiation is characterized by a transient peak of cell-to-cell gene expression variability in normal and pathological conditions.
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  6. An integrated analysis of myeloid cells identifies gaps in in vitro models of in vivo biology
    Nadia Rajab, Paul W. Angel, Yidi Deng, Jennifer L. Gu, Vanta J. Jameson, Mariola Kurowska‐Stolarska, Simon W. F. Milling, Chris M. Pacheco, Matt Rutar, Andrew L. Laslett et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  7. A comprehensive single-cell atlas of freshly-dissociated human synovium in inflammatory arthritis with an optimized dissociation protocol for prospective fresh synovial biopsy collection
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  8. MAIT cells have a negative impact on glioblastoma
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  10. Functional haematopoietic progenitor cells in the adult human lung
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  11. Natural and age-related variation in circulating human hematopoietic stem cells
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  12. Humanized in vivo bone marrow models orchestrate multi-lineage human hematopoietic cell development
    Laurent Renou, Wenjie Sun, Chloé Friedrich, Klaudia Galant, Cécile Conrad, Evelia Plantier, Katharina Schallmoser, Linda M. Krisch, Vilma Barroca, Saryami Devanand et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  13. Bone marrow microenvironment signatures associate with patient survival after guadecitabine and atezolizumab therapy in HMA-resistant MDS
    H. Josh Jang, Guillermo Urrutia, Andreas Due Ørskov, Hyeon Jin Kim, Seth A. Nelson, Anh Van Nguyen, Hyein Lee, Ryan S. Burgos, Benjamin K. Johnson, Marc Wegener et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  14. A primer on single-cell genomics in myeloid biology
    Kyle Ferchen, Baobao Song, H. Leighton Grimes · 2020 · Current Opinion in Hematology
  15. Developmental stage- and site-specific transitions in lineage specification and gene regulatory networks in human hematopoietic stem and progenitor cells
    Anindita Roy, Guanlin Wang, Deena Iskander, Sorcha O’Byrne, Natalina Elliott, Jennifer O’Sullivan, Gemma Buck, Elisabeth F. Heuston, Wei Xiong Wen, Alba Rodríguez-Meira et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  16. Single Cell Databases: An Emerging and Essential Tool
    Scott Walker, Imad Abugessaisa, Takeya Kasukawa · 2021 · Springer eBooks
  17. Application of single cell transcriptomics to characterize the progression of hematopoietic cells to myeloid malignancies
    Marina Ainciburu · 2022 · Deposito Adademico Digital Universidad De Navarra (University of Navarra)
  18. Bone marrow from focal segmental glomerulosclerosis displays activation of inflammatory pathway
    Priyanka Rashmi, Patrick Boada, Arvind Soni, Tara K. Sigdel, Dmitry Rychkov, Eunsil Hahm, Andrea Alice Da Silva, Izabella Damm, Rohan Paul, Flavio G. Vincenti et al. · 2023 · medRxiv
  19. Mapping the Trajectory of Human Natural Killer Cell Development Through Clonal Tracking and Gene Network Analysis
    Dang-Nghiem Vo, Ouyang Yuan, Minoru Kanaya, Gladys Telliam Dushime, Olga Kotova, Emel Caglar, Kristian Honnens de Lichtenberg, Shamim Herbert Rahman, Shamit Soneji, David Bryder et al. · 2023 · SSRN Electronic Journal
  20. IL-1β–mediated inflammatory signaling drives ineffective erythropoiesis in early-stage myelodysplastic syndromes
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  21. Glycosylation as regulator of human B-cell leukaemias in bone marrow
    Nora Heisterkamp · 2023 · Frontiers in Hematology
  22. Simultaneous Isolation and Amplification of mRNA and Genomic DNA of a Single Cell
    Miodrag Gužvić · 2024 · Methods in molecular biology
  23. Additional file 3 of Characterization of bone marrow heterogeneity in NK-AML (M4/M5) based on single-cell RNA sequencing
    Wenqi Wu, Zeyan Shi, Zhongyuan Tang, Huiqun Li, Xiaoke Huang, Xiaolin Liang, Jing Li, Yibin Yao, Weihua Zhao, Meiqing Wu et al. · 2023 · Figshare
  24. Additional file 4 of Characterization of bone marrow heterogeneity in NK-AML (M4/M5) based on single-cell RNA sequencing
    Wenqi Wu, Zeyan Shi, Zhongyuan Tang, Huiqun Li, Xiaoke Huang, Xiaolin Liang, Li, Jing, Yibin Yao, Weihua Zhao, Meiqing Wu et al. · 2023 · Figshare
  25. Additional file 2 of Characterization of bone marrow heterogeneity in NK-AML (M4/M5) based on single-cell RNA sequencing
    Wenqi Wu, Zeyan Shi, Zhongyuan Tang, Huiqun Li, Xiaoke Huang, Xiaolin Liang, Jing Li, Yibin Yao, Weihua Zhao, Meiqing Wu et al. · 2023 · Figshare
  26. BiGCN: Leveraging Cell and Gene Similarities for Single-cell Transcriptome Imputation with Bi-Graph Convolutional Networks
    Yoshitaka Inoue, Ethan Kulman, Rui Kuang · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  27. Single-cell analysis of pediatric acute myeloid leukemia samples uncovers treatment-resistant stem and mast cells
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  28. Single-cell multiomics of pediatric BM reveals age-dependent differences in lineage differentiation linked to stromal cell heterogeneity
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  29. Inflammatory Mesenchymal Stromal Cells and IFN-responsive T cells are key mediators of human bone marrow niche remodeling in CHIP and MDS
    Karin D. Prummel, Kevin Woods, Maksim M. Kholmatov, Eric C. Schmitt, Evi P. Vlachou, Gereon Poschmann, Kai Stühler, Rebekka Wehner, Marc Schmitz, Susann Winter et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  30. RUNX1::RUNX1T1 Depletion Eliminates Stemness and Induces Bidirectional Differentiation of Acute Myeloid Leukemia
    Polina K. Derevyanko, Laura E. Swart, L. Daniel Mata Casimiro, Luca M. van den Brink, Anita T. van Oort, Minoo Ashtiani, Christian Michel Zwaan, Anja Krippner‐Heidenreich, Constanze Bonifer, Raymond Michel Schiffelers et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  31. Hematopoietic Proliferation is Orchestrated by the Sequential and Lineage-Specific Activation of Cyclin D, Cyclin E and CDKN Sub-Modules within the G1/S Network
    Andrea Hänel, Aya Abdelsalam, Sylvain Tollis · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  32. A systems approach to B-cell development identifies BDNF as a regulator of human B lymphopoiesis
    Neta Nevo, Yuval Klein, Ayelet Alpert, Amir Grau, Doron Melamed, Timothy J Few-Cooper, Neta Milman, Shai S. Shen-Orr · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  33. Distinct stem cell identities converge into shared erythroid stress in ERCC6L2 disease and Shwachman–Diamond syndrome
    Laura Langohr, Ilse Kaaja, Suvi P. M. Douglas, Hanna Nebelung, Jessica Koski, Ina Ikonen, Lotta Katainen, Katri Maljanen, Marja Hakkarainen, Tuulia Räisänen et al. · 2026 · HemaSphere
  34. Single-cell analysis reveals the cellular and transcriptional diversity of thyrocytes in the normal pediatric thyroid
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  35. Mathematical analysis of G1/S sub-networks in hematopoietic proliferation: Sequential and lineage-specific activation
    Andrea Hänel, Aya Abdelsalam, Sylvain Tollis · 2025 · iScience
  36. Additional file 1 of Single-cell analysis of immune and stroma cell remodeling in clear cell renal cell carcinoma primary tumors and bone metastatic lesions
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  37. Additional file 8 of Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cells
    Loïc Fiévet, Nicolas Espagnolle, Daniela Gerovska D, Bernard, David, Charlotte Syrykh, Camille Laurent, Pierre Layrolle, Julien De Lima, Arthur Justo, Nicolas Reina et al. · 2024 · Figshare
  38. Additional file 2 of Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cells
    Loïc Fiévet, Nicolas Espagnolle, Daniela Gerovska D, Bernard, David, Charlotte Syrykh, Camille Laurent, Pierre Layrolle, Julien De Lima, Arthur Justo, Nicolas Reina et al. · 2024 · Figshare
  39. Additional file 1 of Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cells
    Loïc Fiévet, Nicolas Espagnolle, Daniela Gerovska D, Bernard, David, Charlotte Syrykh, Camille Laurent, Pierre Layrolle, Julien De Lima, Arthur Justo, Nicolas Reina et al. · 2024 · Figshare
  40. Additional file 9 of Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cells
    Loïc Fiévet, Nicolas Espagnolle, Daniela Gerovska D, Bernard, David, Charlotte Syrykh, Camille Laurent, Pierre Layrolle, Julien De Lima, Arthur Justo, Nicolas Reina et al. · 2024 · Figshare
  41. Additional file 3 of Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cells
    Loïc Fiévet, Nicolas Espagnolle, Daniela Gerovska D, Bernard, David, Charlotte Syrykh, Camille Laurent, Pierre Layrolle, Julien De Lima, Arthur Justo, Nicolas Reina et al. · 2024 · Figshare
  42. Additional file 7 of Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cells
    Loïc Fiévet, Nicolas Espagnolle, Daniela Gerovska D, Bernard, David, Charlotte Syrykh, Camille Laurent, Pierre Layrolle, Julien De Lima, Arthur Justo, Nicolas Reina et al. · 2024 · Figshare
  43. Additional file 5 of Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cells
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  44. Additional file 11 of Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cells
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  45. Additional file 2 of Single-cell analysis of immune and stroma cell remodeling in clear cell renal cell carcinoma primary tumors and bone metastatic lesions
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  46. Additional file 6 of Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cells
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  47. Additional file 4 of Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cells
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  48. Additional file 10 of Single-cell RNA sequencing of human non-hematopoietic bone marrow cells reveals a unique set of inter-species conserved biomarkers for native mesenchymal stromal cells
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  49. Additional file 1 of Single cell characterization of B-lymphoid differentiation and leukemic cell states during chemotherapy in ETV6-RUNX1-positive pediatric leukemia identifies drug-targetable transcription factor activities
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  50. Additional file 1 of Characterization of bone marrow heterogeneity in NK-AML (M4/M5) based on single-cell RNA sequencing
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  52. SPINK2 silencing suppresses leukemic proliferation and restores myeloid commitment via MECOM downregulation in acute myeloid leukaemia
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