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Calcium signalling: dynamics, homeostasis and remodelling

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Regulation mechanisms and signaling pathways of autophagy

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Bcl-2 Antiapoptotic Proteins Inhibit Beclin 1-Dependent Autophagy

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Induction of autophagy and inhibition of tumorigenesis by beclin 1

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The Rag GTPases Bind Raptor and Mediate Amino Acid Signaling to mTORC1

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Nutrient-dependent mTORC1 Association with the ULK1–Atg13–FIP200 Complex Required for Autophagy

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ULK-Atg13-FIP200 Complexes Mediate mTOR Signaling to the Autophagy Machinery

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Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum

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An ATP-competitive Mammalian Target of Rapamycin Inhibitor Reveals Rapamycin-resistant Functions of mTORC1

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How Cells Deal with the Fluctuating Environment: Autophagy Regulation under Stress in Yeast and Mammalian Systems

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Intersection of autophagy with pathways of antigen presentation

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TSPAN1, a novel tetraspanin member highly involved in carcinogenesis and chemoresistance

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Molecular Targets of Curcumin and Its Therapeutic Potential for Ovarian Cancer

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Autophagosomal Protein Dynamics and Influenza Virus Infection

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Insulin-Stimulated Degradation of Apolipoprotein B100: Roles of Class II Phosphatidylinositol-3-Kinase and Autophagy

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Selective Autophagy in Hyperglycemia-Induced Microvascular and Macrovascular Diseases

Bharath, L. P., Rockhold, J. D., & Conway, R. (2021) · Cells · doi:10.3390/cells10082114 · Cited by 31

Activation of Autophagy of Aggregation-prone Ubiquitinated Proteins by Timosaponin A-III

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Cell Autophagy in NASH and NASH-Related Hepatocellular Carcinoma

Udoh, U. S., Rajan, P. K., Nakafuku, Y., Finley, R., & Sanabria, J. R. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23147734 · Cited by 30

Comparative analysis of autophagy and tauopathy related markers in cerebral ischemia and Alzheimer’s disease animal models

Villamil-Ortiz, J., & Cardona-Gómez, G. P. (2015) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2015.00084 · Cited by 29

An Updated Review on Implications of Autophagy and Apoptosis in Tumorigenesis: Possible Alterations in Autophagy through Engineered Nanomaterials and Their Importance in Cancer Therapy

Ghaznavi, H., Shirvaliloo, M., Zarebkohan, A., Shams, Z., Radnia, F., Bahmanpour, Z., Sargazi, S., Saravani, R., Shirvalilou, S., Shahraki, O., et al. (2021) · Molecular Pharmacology · doi:10.1124/molpharm.121.000234 · Cited by 27

Transcriptomic analysis of the autophagy machinery in crustaceans

Suwansa‐ard, S., Kankuan, W., Thongbuakaew, T., Saetan, J., Kornthong, N., Kruangkum, T., Khornchatri, K., Cummins, S. F., Isidoro, C., & Sobhon, P. (2016) · BMC Genomics · doi:10.1186/s12864-016-2996-4 · Cited by 26

Autophagy in Heart Failure: Insights into Mechanisms and Therapeutic Implications

Bielawska, M., Warszyńska, M., Stefańska, M., & Błyszczuk, P. (2023) · Journal of Cardiovascular Development and Disease · doi:10.3390/jcdd10080352 · Cited by 33

Two isotypes of phosphatidylinositol 3‐phosphate ‐ binding sorting nexins play distinct roles in trogocytosis in Entamoeba histolytica

Watanabe, N., Nakada‐Tsukui, K., & Nozaki, T. (2019) · Cellular Microbiology · doi:10.1111/cmi.13144 · Cited by 29

Regulation of autophagy by high‐ and low‐risk human papillomaviruses

Aranda‐Rivera, A. K., Cruz‐Gregorio, A., Briones‐Herrera, A., & Pedraza‐Chaverrí, J. (2020) · Reviews in Medical Virology · doi:10.1002/rmv.2169 · Cited by 27

Insulin-dependent apolipoprotein B degradation is mediated by autophagy and involves class I and class III phosphatidylinositide 3-kinases

Sparks, J. D., O’Dell, C., Chamberlain, J. M., & Sparks, C. E. (2013) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2013.05.029 · Cited by 25

Implication of Different HIV-1 Genes in the Modulation of Autophagy

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Roles of Specialized Pro-Resolving Lipid Mediators in Autophagy and Inflammation

Recchiuti, A., Isopi, E., Romano, M., & Mattoscio, D. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21186637 · Cited by 26

Programmed Cell Death of Chondrocytes, Synovial Cells, Osteoclasts, and Subchondral Bone Cells in Osteoarthritis

Huang, J., Wu, L., Zhao, Y., & Zhao, H. (2025) · Journal of Inflammation Research · doi:10.2147/jir.s514309 · Cited by 28

How phosphoinositide 3-phosphate controls growth downstream of amino acids and autophagy downstream of amino acid withdrawal

Ktistakis, N. T., Manifava, M., Schoenfelder, P., & Rotondo, S. (2012) · Biochemical Society Transactions · doi:10.1042/bst20110684 · Cited by 23

Non-coding RNAs as regulators of autophagy in chondrocytes: Mechanisms and implications for osteoarthritis

Zhu, C., Zhang, L., Ding, X., Wu, W., & Zou, J. (2024) · Ageing Research Reviews · doi:10.1016/j.arr.2024.102404 · Cited by 24

Killing of tumor cells: A drama in two acts

Giansanti, V., Tillhon, M., Mazzini, G., Prosperi, E., Lombardi, P., & Scovassi, A. I. (2011) · Biochemical Pharmacology · doi:10.1016/j.bcp.2011.05.023 · Cited by 23

Autophagy Underlies the Proteostasis Mechanisms of Artemisinin Resistance in P. falciparum Malaria

Ray, A., Mathur, M., Choubey, D., Karmodiya, K., & Surolia, N. (2022) · mBio · doi:10.1128/mbio.00630-22 · Cited by 24

Targets, trafficking, and timing of cardiac autophagy

Rotter, D., & Rothermel, B. A. (2012) · Pharmacological Research · doi:10.1016/j.phrs.2012.10.001 · Cited by 23

Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns

Philippon, H., Brochier‐Armanet, C., & Perrière, G. (2015) · BMC Evolutionary Biology · doi:10.1186/s12862-015-0498-7 · Cited by 22

Clinical relevance of autophagic therapy in cancer: Investigating the current trends, challenges, and future prospects

Mukhopadhyay, S., Sinha, N., Das, D. N., Panda, P. K., Naik, P. P., & Bhutia, S. K. (2016) · Critical Reviews in Clinical Laboratory Sciences · doi:10.3109/10408363.2015.1135103 · Cited by 22

Autophagy – molecular mechanism, apoptosis and cancer

Polewska, J. (2012) · Postępy Higieny i Medycyny Doświadczalnej · doi:10.5604/17322693.1021109 · Cited by 22

Implications of autophagy on arbovirus infection of mosquitoes

Brackney, D. E. (2017) · Current Opinion in Insect Science · doi:10.1016/j.cois.2017.05.001 · Cited by 23

Single-Molecule Analysis of Lipid–Protein Interactions in Crude Cell Lysates

Arauz, E. J., Aggarwal, V., Jain, A., Ha, T., & Chen, J. (2016) · Analytical Chemistry · doi:10.1021/acs.analchem.5b04127 · Cited by 20

NPFs-mediated actin cytoskeleton: a new viewpoint on autophagy regulation

Dong, Y., & Quan, C. (2024) · Cell Communication and Signaling · doi:10.1186/s12964-023-01444-2 · Cited by 18

The interplay of microRNAs and transcription factors in autophagy regulation in nonalcoholic fatty liver disease

Kim, Y., Lee, D.-H., Park, S., Jeon, T., & Jung, C. H. (2021) · Experimental & Molecular Medicine · doi:10.1038/s12276-021-00611-0 · Cited by 19

Bcl-xL Affects Group A Streptococcus-Induced Autophagy Directly, by Inhibiting Fusion between Autophagosomes and Lysosomes, and Indirectly, by Inhibiting Bacterial Internalization via Interaction with Beclin 1-UVRAG

Nakajima, S., Aikawa, C., Nozawa, T., Minowa‐Nozawa, A., Toh, H., & Nakagawa, I. (2017) · PLoS ONE · doi:10.1371/journal.pone.0170138 · Cited by 20

Generation and Characterization of Germline-Specific Autophagy and Mitochondrial Reactive Oxygen Species Reporters in Drosophila

Nilangekar, K. S., Murmu, N., Sahu, G., & Shravage, B. V. (2019) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2019.00047 · Cited by 19

Novel role of autophagy-associated Pik3c3 gene in gonadal white adipose tissue browning in aged C57/Bl6 male mice

Ghosh, A. K., Mau, T., O’Brien, M., & Yung, R. L. (2018) · Aging · doi:10.18632/aging.101426 · Cited by 18

Senescence and Abiotic Stress Induce Expression of Autophagy-related Genes in Petunia

Quijia-Pillajo, J., Chapin, L. J., & Jones, M. L. (2018) · Journal of the American Society for Horticultural Science · doi:10.21273/jashs04349-18 · Cited by 17

MARCH7-mediated ubiquitination decreases the solubility of ATG14 to inhibit autophagy

Shi, X. F., Wu, W., Feng, Z., Fan, P., Shi, R., & Zhang, X. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.113045 · Cited by 15

The steroid hormone 20-hydroxyecdysone upregulates calcium release-activated calcium channel modulator 1 expression to induce apoptosis in the midgut of Helicoverpa armigera

Li, Y.-B., Pei, X.-Y., Wang, D., Chen, C.-H., Cai, M.-J., Wang, J.-X., & Zhao, X.-F. (2017) · Cell Calcium · doi:10.1016/j.ceca.2017.10.004 · Cited by 15

Emendation of autophagic dysfuction in neurological disorders: a potential therapeutic target

Sainani, S. R., Pansare, P. A., Rode, K., Bhalchim, V. M., Doke, R. R., & Desai, S. M. (2020) · International Journal of Neuroscience · doi:10.1080/00207454.2020.1822356 · Cited by 16

Regulation of Autophagy Via PERK-eIF2α Effectively Relieve the Radiation Myelitis Induced by Iodine-125

Yang, Z., Xu, Y., Xu, L., Maccauro, G., Rossi, B., Chen, Y., Li, H., Zhang, J., Sun, H., Yang, Y., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0076819 · Cited by 16

Effects of Electromagnetic Radiation on Autophagy and its Regulation.

Hao, Y., Zhao, L., & Peng, R. (2018) · PubMed · doi:10.3967/bes2018.006 · Cited by 15

The essential effect of mTORC1-dependent lipophagy in non-alcoholic fatty liver disease

Tan, X., Huang, X., Lu, Z., Chen, L., Hu, J., Tian, X., & Qiu, Z. (2023) · Frontiers in Pharmacology · doi:10.3389/fphar.2023.1124003 · Cited by 14

Fluorescent Protein-Based Autophagy Biosensors

Kim, H., & Seong, J. (2021) · Materials · doi:10.3390/ma14113019 · Cited by 15

Reactive nitrogen species as therapeutic targets for autophagy/mitophagy modulation to relieve neurodegeneration in multiple sclerosis: Potential application for drug discovery

Li, W., Wu, M., Li, Y., & Shen, J. (2023) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2023.07.032 · Cited by 16

Radiation Induces Autophagy via Histone H4 Lysine 20 Trimethylation in Non-small Cell Lung Cancer Cells

Lee, T., Kim, S. Y., Kim, H.-R., Kim, H., & Kim, C. H. (2020) · Anticancer Research · doi:10.21873/anticanres.14224 · Cited by 14

Novel findings about the mode of action of the antifungal protein PeAfpA against Saccharomyces cerevisiae

Giner‐Llorca, M., Locascio, A., Alonso‐del‐Real, J., Marcos, J. F., & Manzanares, P. (2023) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-023-12749-0 · Cited by 14

PI3P-dependent regulation of cell size and autophagy by phosphatidylinositol 5-phosphate 4-kinase

Ghosh, A., Venugopal, A., Shinde, D. D., Sharma, S., Krishnan, M., Mathre, S., Krishnan, H., Saha, S., & Raghu, P. (2023) · Life Science Alliance · doi:10.26508/lsa.202301920 · Cited by 12

Integrating the effects of sucrose intake on the brain and white adipose tissue: Could autophagy be a possible link?

Mattar, P., Toledo, L., Hernández‐Cáceres, M. P., Peña‐Oyarzún, D., Morselli, E., & Perez‐Leighton, C. E. (2022) · Obesity · doi:10.1002/oby.23411 · Cited by 12

Mechanism of programmed cell death in the posterior silk gland of the silkworm, Bombyx mori , during pupation based on Ca 2+ homeostasis

Gu, H., Zou, H., Cheng, J., Liu, X., Jiang, Z., Peng, P., Li, F., & Li, B. (2024) · Insect Molecular Biology · doi:10.1111/imb.12911 · Cited by 12

PRL1 and PRL3 promote macropinocytosis via its lipid phosphatase activity

Ye, Z., Ng, C. P., Liu, H., Bao, Q., Xu, S., Zu, D., He, Y., Huang, Y., Al-Aidaroos, A. Q., Guo, K., et al. (2024) · Theranostics · doi:10.7150/thno.93127 · Cited by 10

Autophagy in doxorubicin resistance: basic concepts, therapeutic perspectives and clinical translation

Zhang, Y., Ji, Y., Tu, Y., & Li, Y. (2025) · Frontiers in Immunology · doi:10.3389/fimmu.2025.1642050 · Cited by 10

Identification of RNA aptamer which specifically interacts with PtdIns(3)P

Donia, T., Bala, J., Suizu, F., Hirata, N., Tanaka, T., Ishigaki, S., Pranzatelli, T. J. F., Nio‐Kobayashi, J., Iwanaga, T., Chiorini, J. A., et al. (2019) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2019.07.034 · Cited by 11

Distinct Signaling Pathways for Autophagy-Driven Cell Death and Survival in Adult Hippocampal Neural Stem Cells

Jeong, S.-H., An, H.-K., Ha, S., & Yu, S.-W. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24098289 · Cited by 9

Autophagy: New Questions from Recent Answers

Reggiori, F. (2012) · ISRN Molecular Biology · doi:10.5402/2012/738718 · Cited by 8

Cellular mechanisms of acute rhabdomyolysis in inherited metabolic diseases

de Calbiac, H., Imbard, A., & de Lonlay, P. (2024) · Journal of Inherited Metabolic Disease · doi:10.1002/jimd.12781 · Cited by 9

Neuroprotective Potential of the Flavonoids Quercetin and Epicatechin in a C. elegans Tauopathy Model

Garzón‐García, L., Ayuda‐Durán, B., González‐Manzano, S., Santos‐Buelga, C., & Gonzaléz‐Paramás, A. M. (2025) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.70108 · Cited by 6

Autophagy: mechanisms, roles in human diseases, and therapeutic perspectives

He, J., & Qi, T. (2026) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2026.1776289 · Cited by 7

The Regulatory Role of Non-coding RNA in Autophagy in Myocardial Ischemia-Reperfusion Injury

Wang, D., Niu, Z., & Wang, X. (2022) · Frontiers in Pharmacology · doi:10.3389/fphar.2022.822669 · Cited by 8

A VPS15-like kinase regulates apicoplast biogenesis and autophagy by promoting PI3P generation in Toxoplasma gondii

Rawat, R. S., Bansal, P., & Sharma, P. (2022) · PLoS Pathogens · doi:10.1371/journal.ppat.1010922 · Cited by 7

Sex Disparity in Cancer: Role of Autophagy and Estrogen Receptors

Vona, R., Cittadini, C., Ortona, E., & Matarrese, P. (2025) · Cells · doi:10.3390/cells14040273 · Cited by 8

H2 -induced transient upregulation of phospholipids with suppression of energy metabolism

Iketani, M., Sakane, I., Fujita, Y., Ito, M., & Ohsawa, I. (2022) · Medical Gas Research · doi:10.4103/2045-9912.344973 · Cited by 6

Microcystin-LR-induced autophagy via miR-282–5p/PIK3R1 pathway in Eriocheir sinensis hepatopancreas

Zhang, Y., Gao, J., Cao, L., Du, J., Xu, G., & Xu, P. (2023) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2023.115661 · Cited by 6

Nutrient ingestion increased mTOR signaling, but not hVps34 activity in human skeletal muscle after sprint exercise

Rundqvist, H., Lilja, M. R., Rooyackers, O., Odrzywol, K., Murray, J. T., Esbjörnsson, M., & Jansson, E. (2013) · Physiological Reports · doi:10.1002/phy2.76 · Cited by 6

Phosphoinositide Signaling During Membrane Transport in Saccharomyces Cerevisiae

Schuh, A. L., & Audhya, A. (2012) · Sub-cellular biochemistry/Subcellular biochemistry · doi:10.1007/978-94-007-3015-1_2 · Cited by 6

Mass Assays to Quantify Bioactive PtdIns3P and PtdIns5P During Autophagic Responses

Viaud, J., Chicanne, G., Solinhac, R., Hnia, K., Gaits‐Iacovoni, F., & Payrastre, B. (2016) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/bs.mie.2016.09.061 · Cited by 6

Metabolic Network Construction Based on the Genome of the Marine Diatom Thalassiosira Pseudonana and the Analysis of Genome-wide Transcriptome Data to Investigate Triacylglyceride Accumulation

Parker, K. (2013) · doi:10.31979/etd.mved-nx78 · Cited by 6

Protein quality control and cancerogenesis.

Trčka, F., Vojtěšek, B., & Müller, P. (2012) · PubMed · Cited by 5

Ограничение питательных веществ как подход к комбинированной терапии опухолей

Senichkin, V. V., Kopeina, G. S., Zamaraev, A. V., Lavrik, I. N., Животовский, Б. Д., & Zhivotovsky, B. (2016) · Molecular Biology · doi:10.7868/s0026898416030101 · Cited by 5

Nutrient restriction in combinatory therapy of tumors

Senichkin, V. V., Kopeina, G. S., Zamaraev, A. V., Lavrik, I. N., & Zhivotovsky, B. (2016) · Molecular Biology · doi:10.1134/s0026893316030109 · Cited by 5

Atg6 promotes organismal health by suppression of cell stress and inflammation

Shen, J. L., Doherty, J., Allen, E. A., Fortier, T. M., & Baehrecke, E. H. (2022) · Cell Death and Differentiation · doi:10.1038/s41418-022-01014-y · Cited by 5

PTEN acts as a crucial inflammatory checkpoint controlling TLR9/IL-6 axis in B cells

Tsai, P., Chen, M., Hsu, W.-C., Lin, S., Chan, P.-C., Chen, H.-H., Kao, C., Lin, W., Chuang, T., Yu, G., et al. (2024) · iScience · doi:10.1016/j.isci.2024.110388 · Cited by 5

Molecular interaction between small nuclear ribonucleoprotein polypeptide G and heat shock protein 70.14: a microscale thermophoresis exposition towards developing anti-cancer drugs.

Mabonga, L., Ikwegbue, P. C., Masamba, P., & Kappo, A. P. (2022) · PubMed Central · Cited by 4

Methods to Measure Autophagy in Cancer Metabolism

von Muhlinen, N. (2019) · Methods in molecular biology · doi:10.1007/978-1-4939-9027-6_10 · Cited by 4

Autophagy in Cell Fate and Diseases

Grasso, D., Ropolo, A., & Vaccaro, M. I. (2015) · InTech eBooks · doi:10.5772/61553 · Cited by 6

Modulating Autophagy and the “Reverse Warburg Effect”

Vaccaro, M. I., González, C. D., Álvarez, S., & Ropolo, A. (2014) · Cancer drug discovery and develogment/Cancer drug discovery and development · doi:10.1007/978-1-4614-9545-1_6 · Cited by 4

Structural characterization of autophagy related protein complexes

Metje‐Sprink, J. (2017) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-6331 · Cited by 4

NAD+ Homeostasis and Autophagy: Integrated Control Through Nutrient Signaling in Yeast and Mammals

McDaniel, M., Lee, L.-H., & Lin, S.-J. (2025) · Cells · doi:10.3390/cells14191495 · Cited by 4

Autophagy in Rheumatoid Arthritis: Molecular Mechanisms, Diagnostic Biomarkers, and Emerging Therapeutic Strategies

Nasrollahizadeh, A., Rahmati, S., Chahkand, M. S. G., Moallem, F. E., Azarm, E., Dadkhah, P. A., Karimi, M., Amini‐Salehi, E., & Karimi, M. A. (2026) · Inflammation · doi:10.1007/s10753-025-02406-1 · Cited by 3

Negative Surface Charge and Membrane Lipid Composition Underlying Extracellular Vesicle Function

Seo, N., & Ichiki, T. (2026) · ACS Nano Medicine · doi:10.1021/acsnanomed.5c00108 · Cited by 4

Regulation of the DNA Damage Response by Autophagy

Eapen, V. V., Waterman, D. P., Lemos, B. R., & Haber, J. E. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-805420-8.00010-x · Cited by 3

Elucidating the anti-cancer mechanisms for transition-state structure inhibitors of nucleoside phosphorylases methylthioadenosine-DADMe-immucillin A and forodesine

Coorey, N. (2017) · doi:10.26686/wgtn.17067545.v1 · Cited by 2

Thermal Stress and Bleaching in the Cnidarian-Dinoflagellate Symbiosis: The Application of Metabolomics

Hillyer, K. E. (2016) · Open Access Victoria University of Wellington | Te Herenga Waka (Figshare) · doi:10.26686/wgtn.17014454 · Cited by 2

MoOrp-mediated PtdIns4P transportation is essential for autophagy and pathogenicity in Magnaporthe oryzae

Wang, J., Chen, M., Xu, H., Wang, Y., Yang, S.-R., Liu, N., Chen, X., Peng, Y., & Fan, J. (2025) · Autophagy · doi:10.1080/15548627.2025.2531036 · Cited by 2

Non-cell autonomous autophagy in amyotrophic lateral sclerosis: A new promising target?

Rosso, F., Magdalena, R., Torazza, C., Bacchetti, F., Milanese, M., Poletti, A., Bonanno, G., Cristofani, R., & Bonifacino, T. (2025) · Neurobiology of Disease · doi:10.1016/j.nbd.2025.107203 · Cited by 5

Autophagy in Stationary Phase of Growth

Aguilar-López, J. L., & Funes, S. (2019) · Springer eBooks · doi:10.1007/978-3-319-50430-8_60 · Cited by 2

Autophagy and LC3-associated phagocytosis: similarities and differences

Рафисович, И. Б., Skibo, Y. V., & Abramova, Z. I. (2023) · Medical Immunology (Russia) · doi:10.15789/10.15789/1563-0625-aal-2569 · Cited by 2

The Deleterious Duo of Neurodegeneration: Lysosomes and Mitochondria

Nguyen, M. H., Sidransky, E., & Westbroek, W. (2016) · Springer eBooks · doi:10.1007/978-3-319-28637-2_12 · Cited by 2

Phosphoinositides

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Phosphoinositide Signaling in Root Hair Tip Growth

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