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RNA-Seq comparative analysis reveals the response of Enterococcus faecalis TV4 under fluoride exposure

Li, Guannan, Shi, Min, Zhao, Shan, Li, Dan, Long, Yaohang, Yang, Chengfei, Zhu, Yong·2020·Gene
DOI 10.1016/j.gene.2019.144197
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Abstract

Enterococcus faecalis is one of the main components of symbiotic bacteria in the intestine of silkworm (Bombyx mori L.). The abundance of E. faecalis in the intestine of silkworm is affected by fluoride exposure. However, the response mechanism of E. faecalis toward fluoride remains largely unknown. In this study, a strain of E. faecalis (named TV4), which is a symbiotic bacteria of silkworm, was isolated and characterized. Inhibition assay showed that fluoride can significantly inhibit the growth of the TV4 strain (P < 0.05) after culture for 4 h. Finally, Illumina X-Ten platform was used to investigate the response mechanism of E. faecalis TV4 under fluoride exposure. We found that the TV4 strain demonstrated significant changes in its carbohydrate transport and metabolism and energy metabolism. The transcriptome sequencing results revealed that 237 genes were differentially expressed for TV4 grown after fluoride exposure, i.e., 92 genes were differentially up-regulated and 145 genes were differentially down-regulated. Many of the down-regulated genes were involved in cell carbohydrate transport and metabolism and energy production, whereas the up-regulated genes were mostly related to ethanolamine utilization and amino acid synthesis and metabolism. Our results revealed that strain TV4 reduced its carbohydrate metabolism and energy metabolism and increased ethanolamine utilization and amino acid metabolism to adapt and survive under fluoride exposure. This study enhances o…

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Metadata

Authors
Li, G., Shi, M., Zhao, S., Li, D., Long, Y., Yang, C., & Zhu, Y.
ORCID
Li, Guannan
Venue
Gene
Publisher
Elsevier BV
Published
2020-02
Volume
726
Pages
144197
ISSN
0378-1119
DOI
10.1016/j.gene.2019.144197
Cited by
18
References
2
Language
en
Licence
Funders
Chongqing Municipal Human Resources and Social Security Bureau

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Li, G., Shi, M., Zhao, S., Li, D., Long, Y., Yang, C., & Zhu, Y. (2020). RNA-Seq comparative analysis reveals the response of Enterococcus faecalis TV4 under fluoride exposure. Gene. https://doi.org/10.1016/j.gene.2019.144197