Genetic and physiological characterization of denitrifying bacteria from brackishwater shrimp culture ponds of India
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Marinobacter and Thalassolituus have been isolated in farmed shrimp experiments.
“Marinobacter and Thalassolituus have been isolated in farmed shrimp experiments (Dineshkumar et al., 2014).”
From Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp <i>Litopenaeus stylirostris</i> : possible influence of the rearing water and more (2021) · cites this paper as Dineshkumar et al., 2014
Marinobacter and Aestuariibacter have been identified in the rearing environment of adult L. vannamei and brackishwater shrimps.
“Marinobacter and Aestuariibacter have been identified in the rearing environment of adult L. vannamei and brackishwater shrimps (Chen et al., 2019; Dineshkumar et al., 2014).”
From Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp <i>Litopenaeus stylirostris</i> : possible influence of the rearing water and more (2021) · cites this paper as Dineshkumar et al., 2014
Cites
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msr121 · Cited by 39,795 · see citing works
16S ribosomal DNA amplification for phylogenetic study
Weisburg, W. G., Barns, S. M., Pelletier, D. A., & Lane, D. J. (1991) · Journal of Bacteriology · doi:10.1128/jb.173.2.697-703.1991 · Cited by 11,970 · see citing works
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
Cole, J., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R. J., Kulam-Syed-Mohideen, A., Mcgarrell, D., Marsh, T., Garrity, G., et al. (2008) · Nucleic Acids Res. · doi:10.1093/nar/gkn879 · Cited by 4,940 · see citing works
Cell biology and molecular basis of denitrification
Zumft, W. G. (1997) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.61.4.533-616.1997 · Cited by 3,483 · see citing works
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
Pruesse, E., Peplies, J., & Glöckner, F. (2012) · Bioinform. · doi:10.1093/bioinformatics/bts252 · Cited by 2,989 · see citing works
Throbäck, I. N., Enwall, K., Jarvis, Å., & Hallin, S. (2004) · FEMS Microbiology Ecology · doi:10.1016/j.femsec.2004.04.011 · Cited by 1,325 · see citing works
Microbial ecology of the oceans
(2001) · Choice Reviews Online · doi:10.5860/choice.38-5020 · Cited by 1,122 · see citing works
Henry, S., Bru, D., Stres, B., et al. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.00231-06 · Cited by 1,001 · see citing works
Braker, G., Fesefeldt, A., & Witzel, K. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.10.3769-3775.1998 · Cited by 876 · see citing works
Ashelford, K. E., Chuzhanova, N. A., Fry, J. C., Jones, A. J., & Weightman, A. J. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.12.7724-7736.2005 · Cited by 799 · see citing works
Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils
Sanford, R. A., Wagner, D., Wu, Q., Chee‐Sanford, J. C., Thomas, S., Cruz-García, C., Rodríguez, G., Massol‐Deyá, A., Krishnani, K. K., Ritalahti, K. M., et al. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1211238109 · Cited by 647 · see citing works
Nitrogen biogeochemistry of aquaculture ponds
Hargreaves, J. A. (1998) · Aquaculture · doi:10.1016/s0044-8486(98)00298-1 · Cited by 644 · see citing works
Gauthier, M. J., Lafay, B., Christen, R., Fernández-Linares, L. C., Acquaviva, M., Bonin, P., & Bertrand, J. C. (1992) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-42-4-568 · Cited by 600 · see citing works
Denitrifying genes in bacterial and Archaeal genomes
Philippot, L. (2002) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/s0167-4781(02)00420-7 · Cited by 510 · see citing works
Fuhrman, J. A., McCallum, K. L., & Davis, A. A. (1993) · Applied and Environmental Microbiology · doi:10.1128/aem.59.5.1294-1302.1993 · Cited by 479 · see citing works
PCR Detection of Genes Encoding Nitrite Reductase in Denitrifying Bacteria
Hallin, S., & Lindgren, P. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.4.1652-1657.1999 · Cited by 458 · see citing works
Evolution, diversity, and molecular ecology of marine prokaryotes
Giovannoni, S. J., & Rappé (2000) · Medical Entomology and Zoology · Cited by 427 · see citing works
Shrimp and fish pond soils: processes and management
Avnimelech, Y. (2003) · Aquaculture · doi:10.1016/s0044-8486(02)00641-5 · Cited by 358 · see citing works
Aerobic Denitrifying Bacteria That Produce Low Levels of Nitrous Oxide
Takaya, N., Catalan-Sakairi, M. A. B., Sakaguchi, Y., et al. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.6.3152-3157.2003 · Cited by 331 · see citing works
Michotey, V. D., Méjean, V., & Bonin, P. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.4.1564-1571.2000 · Cited by 287 · see citing works
Ivanova, E. P., Flavier, S., & Christen, R. (2004) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.02997-0 · Cited by 271 · see citing works
(2005) · Advances in marine biology · doi:10.1016/s0065-2881(00)x0011-9 · Cited by 238 · see citing works
Nogales, B., Timmis, K. N., Nedwell, D. B., et al. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.10.5017-5025.2002 · Cited by 215 · see citing works
(2011) · SpringerReference · doi:10.1007/springerreference_3666 · Cited by 214 · see citing works
Aerobic Denitrification of Pseudomonas putida AD-21 at Different C/N Ratios
Kim, M., Jeong, S., Yoon, S. J., et al. (2008) · Journal of Bioscience and Bioengineering · doi:10.1263/jbb.106.498 · Cited by 213 · see citing works
Nitrogen transformations and balance in channel catfish ponds
Gross, A., Boyd, C. E., & Wood, C. W. (2000) · Aquacultural Engineering · doi:10.1016/s0144-8609(00)00062-5 · Cited by 182 · see citing works
Marine shrimp culture: Principles and practices
New, M. B. (1993) · Aquaculture · doi:10.1016/0044-8486(93)90316-q · Cited by 177 · see citing works
Diversity of Nitrous Oxide Reductase ( nosZ ) Genes in Continental Shelf Sediments
Scala, D. J., & Kerkhof, L. J. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.4.1681-1687.1999 · Cited by 141 · see citing works
Miyahara, M., Kim, S.-W., Fushinobu, S., Takaki, K., Yamada, T., Watanabe, A., Miyauchi, K., Endo, G., Wakagi, T., & Shoun, H. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.01983-09 · Cited by 127 · see citing works
Xu, M., Guo, J. K., Cen, Y., et al. (2005) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.63157-0 · Cited by 124 · see citing works
Song, Z., An, J. Y., Fu, G., et al. (2011) · Aquaculture · doi:10.1016/j.aquaculture.2011.06.018 · Cited by 110 · see citing works
Criteria and methodology for identifying respiratory denitrifiers
Mahne, I., & Tiedje, J. M. (1995) · Applied and Environmental Microbiology · doi:10.1128/aem.61.3.1110-1115.1995 · Cited by 106 · see citing works
Brettar, I., Christen, R., & Höfle, M. G. (2002) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/00207713-52-6-2211 · Cited by 99 · see citing works
Zhao, J., Manno, D., Beaulieu, C., Paquet, L., & Hawari, J. A.-A. (2005) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.63604-0 · Cited by 85 · see citing works
Chen, F., Xia, Q., & Ju, L. (2006) · Biotechnology and Bioengineering · doi:10.1002/bit.20812 · Cited by 72 · see citing works
Shivaji, S., Gupta, P., Chaturvedi, P., Suresh, K. N., & Delille, D. (2005) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.63478-0 · Cited by 71 · see citing works
Marinobacter excellens sp. nov., isolated from sediments of the Sea of Japan
Gorshkova, N. M. (2003) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.02693-0 · Cited by 67 · see citing works
Brettar, I., Moore, E. R. B., & Höfle, M. G. (2001) · Microbial Ecology · doi:10.1007/s00248-001-0011-2 · Cited by 66 · see citing works
Biodegradation of naphthalene by enriched marine denitrifying bacteria
Lü, X., Zhang, T., Fang, H. H. P., et al. (2010) · International Biodeterioration & Biodegradation · doi:10.1016/j.ibiod.2010.11.004 · Cited by 65 · see citing works
Genetic characterization of denitrifier communities with contrasting intrinsic functional traits
Braker, G., Dörsch, P., & Bakken, L. R. (2011) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2011.01237.x · Cited by 63 · see citing works
Isolation, genetic and functional characterization of novel soil nirK-type denitrifiers
Falk, S., Liu, B., & Braker, G. (2010) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2010.06.004 · Cited by 61 · see citing works
Balows, A., Trüper, H. G., Dworkin, M., et al. (1992) · Cited by 56 · see citing works
Lin, Y.-T., & Shieh, W. Y. (2006) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.64121-0 · Cited by 56 · see citing works
Abraham, T. J., Ghosh, S., Nagesh, T. S., et al. (2004) · Aquaculture · doi:10.1016/j.aquaculture.2004.06.023 · Cited by 51 · see citing works
Physiology and enzymology involved in denitrification by Shewanella putrefaciens
Krause, B., & Nealson, K. H. (1997) · Applied and Environmental Microbiology · doi:10.1128/aem.63.7.2613-2618.1997 · Cited by 46 · see citing works
Characteristics of bacteria showing high denitrification activity in saline wastewater
Yoshie, S., Ogawa, T., Makino, H., et al. (2006) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.2005.01839.x · Cited by 46 · see citing works
Sueoka, K., Satoh, H., Onuki, M., et al. (2008) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2008.01448.x · Cited by 45 · see citing works
Matsuzaka, E., Nomura, N., Nakajima‐Kambe, T., et al. (2003) · Journal of Bioscience and Bioengineering · doi:10.1016/s1389-1723(03)80077-4 · Cited by 44 · see citing works
Brettar, I. (2002) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.02255-0 · Cited by 44 · see citing works
WATER CIRCULATION, AERATION AND OTHER MANAGEMENT PRACTICES
Fast, A. W., & Boyd, C. E. (1992) · Elsevier eBooks · doi:10.1016/b978-0-444-88606-4.50028-x · Cited by 40 · see citing works
Detection and diversity of nitrifying and denitrifying functional genes in coastal aquaculture
Krishnani, K. K. (2010) · Aquaculture · doi:10.1016/j.aquaculture.2010.01.024 · Cited by 33 · see citing works
Castine, S. A., Erler, D. V., Trott, L. A., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0042810 · Cited by 33 · see citing works
Bioremediation in Shrimp Culture Systems
Rosamma, P., & Antony, S. P. (2006) · Dyuthi Digital Repository (Cochin University of Science and Technology) · Cited by 31 · see citing works
Borges, M.-T., Sousa, A. M. M., Marco, P. D., et al. (2007) · Microbial Ecology · doi:10.1007/s00248-007-9256-8 · Cited by 27 · see citing works
Zhang, D., Huo, Y., Xu, X., Wu, Y., Wang, C., Xu, X.-F., & Wu, M. (2011) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.027714-0 · Cited by 27 · see citing works
Jean, W. D., Chen, J., Lin, Y.-T., et al. (2006) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.64306-0 · Cited by 24 · see citing works
Microbulbifer donghaiensis sp. nov., isolated from marine sediment of the East China Sea
Wang, C.-S., Wang, Y., Xu, X., Zhang, D., Wu, Y., & Wu, M. (2009) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.004531-0 · Cited by 23 · see citing works
Transport limitation of oxygen in shrimp culture ponds
Garcia, A., & Brune, D. E. (1991) · Aquacultural Engineering · doi:10.1016/0144-8609(91)90016-d · Cited by 21 · see citing works
Su, J., Liu, B.-Y., & Chang, Y.-C. (2001) · Letters in Applied Microbiology · doi:10.1046/j.1472-765x.2001.01027.x · Cited by 18 · see citing works
Cao, H. (2012) · African Journal of Microbiology Research · doi:10.5897/ajmr11.814 · Cited by 10 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Giraud, C., Callac, N., Beauvais, M., Mailliez, J.-R., Ansquer, D., Selmaoui-Folcher, N., Pham, D., Wabete, N., & Boulo, V. (2021) · PeerJ · doi:10.7717/peerj.12241 · Cited by 23 · see citing works
- Authors
- Dineshkumar, N., Saravanakumar, C., Vasanth, M., Muralidhar, M., & Alavandi, S. V.
- Affiliations
- Indian Council of Agricultural Research (IN)
- Venue
- International Biodeterioration & Biodegradation
- Publisher
- Elsevier BV
- Published
- 2014-08
- Volume
- 92
- Pages
- 49-56
- ISSN
- 0964-8305 (ISSN-L)
- OpenAlex
- W2017597748
- Cited by
- 22
- References
- 60
- Citations by year
- 2025: 1 · 2024: 1 · 2023: 3 · 2022: 2 · 2021: 7 · 2018: 2 · 2017: 3 · 2016: 2 · 2015: 1
- FWCI
- 1.41
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- International Biodeterioration & Biodegradation (publishedVersion)
- Funders
- Indian Council of Agricultural Research
- Topics
- Physical Sciences › Environmental Science › Pollution › Wastewater Treatment and Nitrogen Removal
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Life Sciences › Agricultural and Biological Sciences › Soil Science › Soil Carbon and Nitrogen Dynamics
- Keywords
- denitrifying bacteria, shrimp pond sediment, nitrate reduction, nitrite reduction, denitrification genes, nosZ, nitrous oxide, Marinobacter, Alteromonadales, nitrogen cycling, dissolved oxygen tolerance, bacterial diversity
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review