Cited by 29PI3K/AKT/mTOR signaling in cancerProtein Kinase Regulation and GTPase SignalingMetabolism, Diabetes, and Cancer

Loss of PI3k Activity of Inositol Polyphosphate Multikinase Impairs PDK1-Mediated AKT Activation, Cell Migration, and Intestinal Homeostasis

Open access
Reilly, Luke, Semenza, Evan R., Koshkaryan, George, Mishra, Subrata, Chatterjee, Sujan, Abramson, Efrat, Mishra, Pamela, Sei, Yoshitasu +4 more·2023·iScience

Published version of a preprint

Abstract

Abstract Inositol polyphosphate multikinase (IPMK) is a rate-limiting enzyme in the inositol phosphate (IP) pathway which converts IP3 to IP4 and IP5. In mammalian cells, IPMK can also act as a phosphoinositol-3-kinase (PI3-kinase). We previously found that IPMK is a critical PI3-kinase activator of AKT. Here, we show that IPMK mediates AKT activation by promoting membrane localization and activation of PDK1. The PI3-kinase activity of IPMK is dispensable for membrane localization of AKT, which is entirely controlled by classical PI3-kinase (p110 α ,ß, γ, δ ). By contrast, we found that PDK1 membrane localization was largely independent of classical PI3-kinase. Membrane localization of PDK1 stimulates cell migration by dissociating ROCK1 from inhibitory binding to RhoE and promoting ROCK1-mediated myosin light chain (MLC) phosphorylation. Deletion of IPMK impairs cell migration associated with the abolition of PDK1-mediated ROCK1 disinhibition and subsequent MLC phosphorylation. To investigate the physiological relevance of IPMK-mediated AKT activation, we generated mice selectively lacking IPMK in epithelial cells of the intestine, where IPMK is highly expressed. Deletion of IPMK in intestinal epithelial cells markedly reduced AKT phosphorylation and diminished numbers of Paneth cells – a crypt-resident epithelial cell type that generates the physiological niche for intestinal stem cells. Ablation of IPMK impaired intestinal epithelial cell regeneration basally and after; chemotherapy-induced damage, suggesting a broad role for IPMK in the activation of AKT and intestinal tissue regeneration. In summary, the PI3-kinase activity of IPMK promotes membrane localization of PDK1, a critical kinase whereby AKT maintains intestinal homeostasis. One Sentence Summary PI3-kinase activity of IPMK is essential for activation of AKT.

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  • IPMK is implicated in neurodegeneration, cancer, and inflammation.

    “Over two decades, multidisciplinary research has unveiled its far-reaching biological roles and implications in diverse diseases, including neurodegeneration, cancer, and inflammation.”

    From From Obscurity to Prominence: IPMK’s Expanding Role in Cellular Signaling, Physiology, and Disease (2025) · cites this paper as [34]

    The Introduction (page not provided) links an IPMK mutation to familial intestinal carcinoids and describes IPMK as a putative risk gene for inflammatory bowel disease. The Discussion (page not provided) also suggests IPMK activity may affect Crohn disease risk. The paper does not link IPMK to neurodegeneration, so it supports only part of the attributed disease list. (LLM, conf=0.88)

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  • IPMK is involved in inflammatory disorders, obesity, Alzheimer's disease, inflammatory bowel disease, and intestinal neuroendocrine tumors.

    “Over the past two decades, research utilizing animal models and human mutation analyses has revealed IPMK’s involvement in a wide array of human diseases, including inflammatory disorders [28,29], obesity [30,31], Alzheimer’s disease [32], inflammatory bowel disease [33,34], and intestinal neuroendocrine tumors [35].”
  • Loss of IPMK's kinase activity impairs membrane localization of PDK1 and subsequently affects phosphorylation of MLC by ROCK1.

    “In addition to integrin regulation, Reilly et al. [34] proposed an alternative mechanism whereby the loss of IPMK’s kinase activity impairs the membrane localization of 3-phosphoinositide-dependent protein kinase 1 (PDK1) and subsequently affects the phosphorylation of myosin light chain (MLC) by Rho-associated protein kinase 1 (ROCK1).”
  • Deletion of IPMK or inhibition of its kinase activity results in impaired cell migration.

    “Deletion of IPMK or inhibition of its kinase activity resulted in impaired cell migration, indicating its essential function in this process.”
  • IPMK is an essential PI3-kinase-generating PIP3 critical for AKT activation.

    “Studies by Resnick et al. [26], Maag et al. [15], and Reilly et al. [34] indicated that IPMK is an essential PI3-kinase-generating PIP3, which is critical for AKT activation.”

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  1. [1]Berridge M.J. Lipp P. Bootman M.D. The versatility and universality of calcium signalling Nat. Rev. Mol. Cell Biol. 1 2000 11 21 10.1038/35036035 11413485 · DOI · Paper page
  2. [2]Saiardi A. Erdjument-Bromage H. Snowman A.M. Tempst P. Snyder S.H. Synthesis of diphosphoinositol pentakisphosphate by a newly identified family of higher inositol polyphosphate kinases Curr. Biol. 9 1999 1323 1326 10574768
  3. [3]Maag D. Maxwell M.J. Hardesty D.A. Boucher K.L. Choudhari N. Hanno A.G. Ma J.F. Snowman A.S. Pietropaoli J.W. Xu R. Inositol polyphosphate multikinase is a physiologic PI3k that activates akt/PKB Proc. Natl. Acad. Sci. USA 108 2011 1391 1396 10.1073/pnas.1017831108 21220345 PMC3029688 · DOI · Paper page
  4. [4]Guha P. Tyagi R. Chowdhury S. Reilly L. Fu C. Xu R. Resnick A.C. Snyder S.H. IPMK mediates activation of ULK signaling and transcriptional regulation of autophagy linked to liver inflammation and regeneration Cell Rep. 26 2019 2692 2703.e7 S2211-1247(19)30175-5 [pii] 30840891 PMC6494083
  5. [5]Kim S. Kim S.F. Maag D. Maxwell M.J. Resnick A.C. Juluri K.R. Chakraborty A. Koldobskiy M.A. Cha S.H. Barrow R. Amino acid signaling to mTOR mediated by inositol polyphosphate multikinase Cell Metabol. 13 2011 215 221 10.1016/j.cmet.2011.01.007 PMC3042716 21284988 · DOI · Paper page
  6. [6]Sei Y. Zhao X. Forbes J. Szymczak S. Li Q. Trivedi A. Voellinger M. Joy G. Feng J. Whatley M. A hereditary form of small intestinal carcinoid associated with a germline mutation in inositol polyphosphate multikinase Gastroenterology 149 2015 67 78 10.1053/j.gastro.2015.04.008 25865046 PMC4858647 · DOI · Paper page
  7. [8]Hoxhaj G. Manning B.D. The PI3K-AKT network at the interface of oncogenic signalling and cancer metabolism Nat. Rev. Cancer 20 2020 74 88 10.1038/s41568-019-0216-7 31686003 PMC7314312 · DOI · Paper page
  8. [9]Sarbassov D.D. Guertin D.A. Ali S.M. Sabatini D.M. Phosphorylation and regulation of akt/PKB by the rictor-mTOR complex Science 307 2005 1098 1101 15718470
  9. [10]Komander D. Fairservice A. Deak M. Kular G.S. Prescott A.R. Peter Downes C. Safrany S.T. Alessi D.R. van Aalten D.M.F. Structural insights into the regulation of PDK1 by phosphoinositides and inositol phosphates EMBO J. 23 2004 3918 3928 10.1038/sj.emboj.7600379 15457207 PMC524332 · DOI
  10. [11]Ebner M. Sinkovics B. Szczygieł M. Ribeiro D.W. Yudushkin I. Localization of mTORC2 activity inside cells J. Cell Biol. 216 2017 343 353 10.1083/jcb.201610060 28143890 PMC5294791 · DOI
  11. [12]Pinner S. Sahai E. PDK1 regulates cancer cell motility by antagonising inhibition of ROCK1 by RhoE Nat. Cell Biol. 10 2008 127 137 10.1038/ncb1675 18204440 · DOI · Paper page
  12. [13]Gagliardi P.A. di Blasio L. Puliafito A. Seano G. Sessa R. Chianale F. Leung T. Bussolino F. Primo L. PDK1-mediated activation of MRCKalpha regulates directional cell migration and lamellipodia retraction J. Cell Biol. 206 2014 415 434 10.1083/jcb.201312090 25092657 PMC4121984 · DOI
  13. [14]Resnick A.C. Snowman A.M. Kang B.N. Hurt K.J. Snyder S.H. Saiardi A. Inositol polyphosphate multikinase is a nuclear PI3k with transcriptional regulatory activity Proc. Natl. Acad. Sci. USA 102 2005 12783 12788 0506184102 [pii] 16123124 PMC1200306
  14. [15]Sarkaria J.N. Tibbetts R.S. Busby E.C. Kennedy A.P. Hill D.E. Abraham R.T. Inhibition of phosphoinositide 3-kinase related kinases by the radiosensitizing agent wortmannin Cancer Res. 58 1998 4375 4382 9766667
  15. [16]Franke T.F. PI3K/akt: Getting it right matters Oncogene 27 2008 6473 6488 10.1038/onc.2008.313 18955974 · DOI
  16. [17]Jacinto E. Facchinetti V. Liu D. Soto N. Wei S. Jung S.Y. Huang Q. Qin J. Su B. SIN1/MIP1 maintains rictor-mTOR complex integrity and regulates akt phosphorylation and substrate specificity Cell 127 2006 125 137 16962653
  17. [18]Casamayor A. Morrice N.A. Alessi D.R. Phosphorylation of ser-241 is essential for the activity of 3-phosphoinositide-dependent protein kinase-1: Identification of five sites of phosphorylation in vivo Biochem. J. 342 1999 287 292 10455013 PMC1220463
  18. [19]Sheng H. Shao J. Townsend C.M. Evers B.M. Phosphatidylinositol 3-kinase mediates proliferative signals in intestinal epithelial cells Gut 52 2003 1472 1478 10.1136/gut.52.10.1472 12970141 PMC1773820 · DOI
  19. [20]He X.C. Yin T. Grindley J.C. Tian Q. Sato T. Tao W.A. Dirisina R. Porter-Westpfahl K.S. Hembree M. Johnson T. PTEN-deficient intestinal stem cells initiate intestinal polyposis Nat. Genet. 39 2007 189 198 17237784 PMC4681524
  20. [22]Goldsmith J.R. Spitofsky N. Zamani A. Hood R. Boggs A. Li X. Li M. Reiner E. Ayyaz A. Etwebi Z. TNFAIP8 controls murine intestinal stem cell homeostasis and regeneration by regulating microbiome-induced akt signaling Nat. Commun. 11 2020 2591 2592 10.1038/s41467-020-16379-2 32444641 PMC7244529 · DOI
  21. [23]Thachil E. Hugot J.P. Arbeille B. Paris R. Grodet A. Peuchmaur M. Codogno P. Barreau F. Ogier-Denis E. Berrebi D. Viala J. Abnormal activation of autophagy-induced crinophagy in paneth cells from patients with crohn's disease Gastroenterology 142 2012 1097 1099.e4 10.1126/science.aau3429 22285936 · DOI
  22. [24]Jung I.R. Anokye-Danso F. Jin S. Ahima R.S. Kim S.F. IPMK modulates hepatic glucose production and insulin signaling J. Cell. Physiol. 237 2022 3421 3432 10.1002/jcp.30827. Epub 2022 Jul 13 35822903 · DOI
  23. [25]Tu-Sekine B. Padhi A. Jin S. Kalyan S. Singh K. Apperson M. Kapania R. Hur S.C. Nain A. Kim S.F. Inositol polyphosphate multikinase is a metformin target that regulates cell migration FASEB J., Dec 33 2019 14137 14146 10.1096/fj.201900717RR PMC6894044 31657647 · DOI · Paper page
  24. [26]Cadwell K. Liu J.Y. Brown S.L. Miyoshi H. Loh J. Lennerz J.K. Kishi C. Kc W. Carrero J.A. Hunt S. A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal paneth cells Nature 456 2008 259 263 10.1038/nature07416 18849966 PMC2695978 · DOI · Paper page

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Authors
Reilly, L., Semenza, E. R., Koshkaryan, G., Mishra, S., Chatterjee, S., Abramson, E., Mishra, P., Sei, Y., Wank, S. A., Donowitz, M., Snyder, S. H., & Guha, P.
Affiliations
  • Johns Hopkins University (US)
  • University of Nevada, Las Vegas (US)
  • Memorial Sloan Kettering Cancer Center (US)
  • National Institutes of Health (US)
Corresponding author
  • Snyder, Solomon H.
  • Guha, Prasun
Venue
iScience
Publisher
Elsevier BV
Published
2023-05
Volume
26
Issue
5
Pages
106623
ISSN
2589-0042 (ISSN-L)
OpenAlex
W4364380532
Cited by
29
References
2
Citations by year
2026: 6 · 2025: 10 · 2024: 5 · 2023: 5 · 2022: 2 · 2021: 1
FWCI
2.32
Type
journal article
Language
en
Open access
Locations
  • iScience (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • National Institutes of Health
  • NIGMS (P20GM121325, 5R01MH018501-48)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › PI3K/AKT/mTOR signaling in cancer
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Metabolism, Diabetes, and Cancer
Keywords
inositol polyphosphate multikinase, PDK1, Akt activation, cell migration, intestinal homeostasis, intestinal epithelial cells, Paneth cells, ROCK1, myosin light chain phosphorylation, intestinal regeneration, chemotherapy-induced intestinal damage, lipid kinase activity

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