The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Pseudomonas aeruginosa AlgF is a protein–protein interaction mediator required for acetylation of the alginate exopolysaccharide
Open accessPublished version of a preprint
Abstract
Enzymatic modifications of bacterial exopolysaccharides enhance immune evasion and persistence during infection. In the Gram-negative opportunistic pathogen Pseudomonas aeruginosa, acetylation of alginate reduces opsonic killing by phagocytes and improves reactive oxygen species scavenging. Although it is well known that alginate acetylation in P. aeruginosa requires AlgI, AlgJ, AlgF, and AlgX, how these proteins coordinate polymer modification at a molecular level remains unclear. Here, we describe the structural characterization of AlgF and its protein interaction network. We characterize direct interactions between AlgF and both AlgJ and AlgX in vitro and demonstrate an association between AlgF and AlgX, as well as AlgJ and AlgI, in P. aeruginosa. We determine that AlgF does not exhibit acetylesterase activity and is unable to bind to polymannuronate in vitro. Therefore, we propose that AlgF functions to mediate protein-protein interactions between alginate acetylation enzymes, forming the periplasmic AlgJFXK (AlgJ-AlgF-AlgX-AlgK) acetylation and export complex required for robust biofilm formation.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Flagged first, then by citations
Research works printed but not linked: 76
- Erskine, 2018, Formation of functional, non-amyloidogenic fibres by recombinant Bacillus subtilis TasA, Mol. Microbiol., 110, 897, 10.1111/mmi.13985 · DOI
- Flemming, 2010, The biofilm matrix, Nat. Rev. Microbiol., 8, 623, 10.1038/nrmicro2415 · DOI · Paper page
- Turnbull, 2016, Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms, Nat. Commun., 10.1038/ncomms11220 · DOI · Paper page
- Boisvert, 2016, Microbial biofilms in pulmonary and critical care diseases, Ann. Am. Thorac. Soc., 13, 1615, 10.1513/AnnalsATS.201603-194FR · DOI
- Whitfield, 2015, Enzymatic modifications of exopolysaccharides enhance bacterial persistence, Front Microbiol., 6, 1, 10.3389/fmicb.2015.00471 · DOI
- Forman, 2006, Identification of critical amino acid residues in the plague biofilm Hms proteins, Microbiology (N Y)., 152, 3399
- Cerca, 2007, Molecular basis for preferential protective efficacy of antibodies directed to the poorly acetylated form of staphylococcal poly-N-acetyl-β-(1-6)- glucosamine, Infect. Immun., 75, 3406, 10.1128/IAI.00078-07 · DOI
- Vuong, 2004, A crucial role for exopolysaccharide modification in bacterial biofilm formation, immune evasion, and virulence, J. Biol. Chem., 279, 54881, 10.1074/jbc.M411374200 · DOI
- Itoh, 2008, Roles of pgaABCD genes in synthesis, modification, and export of the Escherichia coli biofilm adhesin poly-β-1,6-N-acetyl-D-glucosamine, J. Bacteriol., 190, 3670, 10.1128/JB.01920-07 · DOI
- Fong, 2010, Role of Vibrio polysaccharide (vps) genes in VPS production, biofilm formation and Vibrio cholerae pathogenesis, Microbiology (N Y)., 156, 2757
- Spiers, 2003, Biofilm formation at the air-liquid interface by the Pseudomonas fluorescens SBW25 wrinkly spreader requires an acetylated form of cellulose, Mol. Microbiol., 50, 15, 10.1046/j.1365-2958.2003.03670.x · DOI
- Tielen, 2005, Alginate acetylation influences initial surface colonization by mucoid Pseudomonas aeruginosa, Microbiol. Res., 160, 165, 10.1016/j.micres.2004.11.003 · DOI
- Nivens, 2001, Role of alginate and its O acetylation in formation of Pseudomonas aeruginosa microcolonies and biofilms, J. Bacteriol., 183, 1047, 10.1128/JB.183.3.1047-1057.2001 · DOI
- Farrell, 2012, Functional characterization of AlgL, an alginate lyase from Pseudomonas aeruginosa, Biochemistry, 51, 255, 10.1021/bi301425r · DOI
- Pier, 2001, Role of alginate O acetylation in resistance of mucoid Pseudomonas aeruginosa to opsonic phagocytosis, Infect. Immun., 69, 1895, 10.1128/IAI.69.3.1895-1901.2001 · DOI
- Learn, 1987, Hypochlorite scavenging by Pseudomonas aeruginosa alginate, Infect. Immun., 55, 1813, 10.1128/iai.55.8.1813-1818.1987 · DOI
- Franklin, 2002, Mutant analysis and cellular localization of the AlgI, AlgJ, and AlgF proteins required for O acetylation of alginate in Pseudomonas aeruginosa, J. Bacteriol., 184, 3000, 10.1128/JB.184.11.3000-3007.2002 · DOI
- Riley, 2013, Structural and functional characterization of Pseudomonas aeruginosa AlgX: role of AlgX in alginate acetylation, J. Biol. Chem., 288, 22299, 10.1074/jbc.M113.484931 · DOI
- Baker, 2014, P. aeruginosa SGNH hydrolase-like proteins AlgJ and AlgX have similar topology but separate and distinct roles in alginate acetylation, PLoS Pathog., 10.1371/journal.ppat.1004334 · DOI
- Franklin, 1996, Identification of algI and algJ in the Pseudomonas aeruginosa alginate biosynthetic gene cluster which are required for alginate O acetylation, J. Bacteriol., 178, 2186, 10.1128/jb.178.8.2186-2195.1996 · DOI
- Franklin, 1993, Identification of algF in the alginate biosynthetic gene cluster of Pseudomonas aeruginosa which is required for alginate acetylation, J. Bacteriol., 175, 5057, 10.1128/jb.175.16.5057-5065.1993 · DOI
- Gheorghita, 2022, Structure of the AlgKX modification and secretion complex required for alginate production and biofilm attachment in Pseudomonas aeruginosa, Nat. Commun., 10.1038/s41467-022-35131-6 · DOI
- Franklin, 2004, Evidence that the algI/algJ gene cassette, required for O acetylation of Pseudomonas aeruginosa alginate, evolved by lateral gene transfer, J. Bacteriol., 186, 4759, 10.1128/JB.186.14.4759-4773.2004 · DOI
- Nerli, 2019, CS-ROSETTA, Methods Enzymol., 321, 10.1016/bs.mie.2018.07.005 · DOI
- Winsor, 2016, Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database, Nucleic Acids Res., 44, D646, 10.1093/nar/gkv1227 · DOI
- Shen, 2008, Consistent blind protein structure generation from NMR chemical shift data, Proc. Natl. Acad. Sci. U. S. A., 105, 4685, 10.1073/pnas.0800256105 · DOI · Paper page
- Kirby, 2004, NvAssign: protein NMR spectral assignment with NMRView, Bioinformatics, 20, 1201, 10.1093/bioinformatics/bth064 · DOI
- Delaglio, 1995, NMRPipe: a multidimensional spectral processing system based on UNIX pipes, J. Biomol. NMR, 10.1007/BF00197809 · DOI
- Kanelis, 2001, Multidimensional NMR methods for protein structure determination, IUBMB Life, 52, 291, 10.1080/152165401317291147 · DOI
- Vranken, 2005, The CCPN data model for NMR spectroscopy: development of a software pipeline, Proteins, 59, 687, 10.1002/prot.20449 · DOI
- Skinner, 2015, Structure calculation, refinement and validation using CcpNmr Analysis, Acta Crystallogr. D Biol. Crystallogr., 71, 154, 10.1107/S1399004714026662 · DOI
- Vehlow, 2011, CMView: interactive contact map visualization and analysis, Bioinformatics, 27, 1573, 10.1093/bioinformatics/btr163 · DOI
- Bhattacharya, 2006, Evaluating protein structures determined by structural genomics consortia, Proteins, 66, 778, 10.1002/prot.21165 · DOI
- Ashkenazy, 2016, ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules, Nucleic Acids Res., 44, W344, 10.1093/nar/gkw408 · DOI · Paper page
- Krissinel, 2007, Inference of macromolecular assemblies from crystalline state, J. Mol. Biol., 372, 774, 10.1016/j.jmb.2007.05.022 · DOI
- Holm, 2010, Dali server: conservation mapping in 3D, Nucleic Acids Res., 38, W545, 10.1093/nar/gkq366 · DOI · Paper page
- Holm, 2022, Dali server: structural unification of protein families, Nucleic Acids Res., 50, W210, 10.1093/nar/gkac387 · DOI
- Beale, 2015, Crystal structures of the extracellular domain from PepT1 and PepT2 provide novel insights into mammalian peptide transport, Structure, 23, 1889, 10.1016/j.str.2015.07.016 · DOI
- Budzik, 2009, Intramolecular amide bonds stabilize pili on the surface of bacilli, Proc. Natl. Acad. Sci. U. S. A., 106, 19992, 10.1073/pnas.0910887106 · DOI
- van Pee, 2017, CryoEM structures of membrane pore and prepore complex reveal cytolytic mechanism of Pneumolysin, Elife, 10.7554/eLife.23644.036 · DOI
- Loconte, 2019, Structure-activity relationships of flurbiprofen analogues as stabilizers of the amyloidogenic protein transthyretin, J. Struct. Biol., 208, 165, 10.1016/j.jsb.2019.08.011 · DOI
- Chanasit, 2020, Analysis of the alginate O-acetylation machinery in Pseudomonas aeruginosa, Appl. Microbiol. Biotechnol., 104, 2179, 10.1007/s00253-019-10310-6 · DOI
- Limoli, 2017, Pseudomonas aeruginosa alginate overproduction promotes coexistence with Staphylococcus aureus in a model of cystic fibrosis respiratory infection, mBio, 8, 1, 10.1128/mBio.00186-17 · DOI
- Hay, 2012, Identification of a periplasmic AlgK-AlgX-MucD multiprotein complex in Pseudomonas aeruginosa involved in biosynthesis and regulation of alginate, Appl. Microbiol. Biotechnol., 93, 215, 10.1007/s00253-011-3430-0 · DOI
- Keiski, 2010, AlgK is a TPR-containing protein and the periplasmic component of a novel exopolysaccharide secretin, Structure, 18, 265, 10.1016/j.str.2009.11.015 · DOI
- Oglesby, 2008, Membrane topology and roles of Pseudomonas aeruginosa Alg8 and Alg44 in alginate polymerization, Microbiology (N Y)., 154, 1605
- Fata Moradali, 2015, Alginate polymerization and modification are linked in Pseudomonas aeruginosa, mBio, 6, 1
- Acuner Ozbabacan, 2011, Transient protein-protein interactions, Protein Eng. Des. Sel., 24, 635, 10.1093/protein/gzr025 · DOI
- Liu, 2003, Functional subsets of the VirB type IV transport complex proteins involved in the capacity of Agrobacterium tumefaciens to serve as a recipient in virB -mediated conjugal transfer of plasmid RSF1010, J. Bacteriol., 185, 3259, 10.1128/JB.185.11.3259-3269.2003 · DOI
- Kastritis, 2011, A structure-based benchmark for protein-protein binding affinity, Protein Sci., 20, 482, 10.1002/pro.580 · DOI
- Schürks, 2002, Monomer composition and sequence of alginates from Pseudomonas aeruginosa, Int. J. Biol. Macromol, 30, 105, 10.1016/S0141-8130(02)00002-8 · DOI
- Skjåk-Bræk, 1986, Monomer sequence and acetylation pattern in some bacterial alginates, Carbohydr. Res., 154, 239, 10.1016/S0008-6215(00)90036-3 · DOI
- Pena, 2006, Manipulation of the acetylation degree of Azotobacter vinelandii alginate by supplementing the culture medium with 3-(N-morpholino)-propane-sulfonic acid, Lett. Appl. Microbiol., 43, 200, 10.1111/j.1472-765X.2006.01925.x · DOI
- Marty, 1992, Influence of nutrient media on the chemical composition of the exopolysaccharide from mucoid and non-mucoid Pseudomonas aeruginosa, FEMS Microbiol. Lett., 98, 35, 10.1111/j.1574-6968.1992.tb05486.x · DOI
- Low, 2018, Gram-negative synthase-dependent exopolysaccharide biosynthetic machines, Curr. Opin. Struct. Biol., 53, 32, 10.1016/j.sbi.2018.05.001 · DOI
- Acheson, 2021, Molecular organization of the E. coli cellulose synthase macrocomplex, Nat. Struct. Mol. Biol., 28, 310, 10.1038/s41594-021-00569-7 · DOI
- Krasteva, 2017, Insights into the structure and assembly of a bacterial cellulose secretion system, Nat. Commun., 8, 25, 10.1038/s41467-017-01523-2 · DOI
- Abidi, 2022, Bacterial crystalline cellulose secretion via a supramolecular BcsHD scaffold, Sci. Adv., 8, 10.1126/sciadv.add1170 · DOI
- Abidi, 2022, Weaving of bacterial cellulose by the Bcs secretion systems, FEMS Microbiol. Rev., 10.1093/femsre/fuab051 · DOI
- Stover, 2000, Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen, Nature, 406, 959, 10.1038/35023079 · DOI
- Hmelo, 2015, Precision-engineering the Pseudomonas aeruginosa genome with two-step allelic exchange, Nat. Protoc., 10, 1820, 10.1038/nprot.2015.115 · DOI
- Choi, 2006, mini-Tn7 insertion in bacteria with single attTn7 sites: example Pseudomonas aeruginosa, Nat. Protoc., 1, 153, 10.1038/nprot.2006.24 · DOI
- Petersen, 2011, SignalP 4.0: discriminating signal peptides from transmembrane regions, Nat. Methods, 8, 785, 10.1038/nmeth.1701 · DOI · Paper page
- Weadge, 2010, Expression, purification, crystallization and preliminary X-ray analysis of Pseudomonas aeruginosa AlgX, Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 66, 588, 10.1107/S1744309110011851 · DOI
- Pettersen, 2021, UCSF ChimeraX: structure visualization for researchers, educators, and developers, Protein Sci., 30, 70, 10.1002/pro.3943 · DOI
- Chitnis, 1990, Cloning of Pseudomonas aeruginosa algG, which controls alginate structure, J. Bacteriol., 172, 2894, 10.1128/jb.172.6.2894-2900.1990 · DOI
- Chibba, 2012, Synthesis and evaluation of inhibitors of E. coli PgaB, a polysaccharide de-N-acetylase involved in biofilm formation, Org. Biomol. Chem., 10, 7103, 10.1039/c2ob26105g · DOI
- Walvoort, 2012, Automated solid-phase synthesis of β-mannuronic acid alginates, Angew. Chem. Int. Edition, 51, 4393, 10.1002/anie.201108744 · DOI
- Golovanov, 2004, A simple method for improving protein solubility and long-term stability, J. Am. Chem. Soc., 126, 8933, 10.1021/ja049297h · DOI
- Hoang, 1998, A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants, Gene, 212, 77, 10.1016/S0378-1119(98)00130-9 · DOI
- Choi, 2005, A Tn7-based broad-range bacterial cloning and expression system, Nat. Methods, 2, 443, 10.1038/nmeth765 · DOI
- Almblad, 2015, The cyclic AMP-Vfr signaling pathway in Pseudomonas aeruginosa is inhibited by cyclic Di-GMP, J. Bacteriol., 197, 2190, 10.1128/JB.00193-15 · DOI
- Ayers, 2009, PilM/N/O/P proteins form an inner membrane complex that affects the stability of the Pseudomonas aeruginosa type IV pilus secretin, J. Mol. Biol., 394, 128, 10.1016/j.jmb.2009.09.034 · DOI
- Salamitou, 1994, Subcellular localization of Clostridium thermocellum ORF3p, a protein carrying a receptor for the docking sequence borne by the catalytic components of the cellulosome, J. Bacteriol., 176, 2828, 10.1128/jb.176.10.2828-2834.1994 · DOI
- Morin, 2013, Collaboration gets the most out of software, Elife, 10.7554/eLife.01456 · DOI
- Choi, 2005, An improved method for rapid generation of unmarked Pseudomonas aeruginosadeletion mutants, BMC Microbiol., 5, 30, 10.1186/1471-2180-5-30 · DOI
Metadata
- Authors
- Low, K. E., Gheorghita, A. A., Tammam, S. D., Whitfield, G. B., Li, Y. E., Riley, L. M., Weadge, J. T., Caldwell, S. J., Chong, P. A., Walvoort, M. T. C., Kitova, E. N., Klassen, J. S., Codée, J. D. C., & Howell, P. L.
- Affiliations
- Hospital for Sick Children (CA)
- University of Toronto (CA)
- Leiden University (NL)
- University of Alberta (CA)
- Corresponding author
- Howell, P. Lynne
- ORCID
- Venue
- Journal of Biological Chemistry
- Publisher
- Elsevier BV
- Published
- 2023-11
- Volume
- 299
- Issue
- 11
- Pages
- 105314
- ISSN
- 0021-9258 (ISSN-L)
- PMC
- PMC10641220
- OpenAlex
- W4387341449
- Cited by
- 11
- References
- 1
- Citations by year
- 2026: 3 · 2025: 4 · 2024: 3 · 2023: 1
- FWCI
- 0.98
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Journal of Biological Chemistry (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Leiden Repository (Leiden University) (publishedVersion, cc-by)
- Leiden Repository (Leiden University) (submittedVersion, cc-by)
- University of Groningen research database (University of Groningen / Centre for Information Technology) (submittedVersion, cc-by)
- Funders
- Canada Foundation for Innovation
- The Hospital for Sick Children
- GlycoNet
- Government of Canada
- Canadian Institutes of Health Research (FDN-154327, PJT-153322)
- Cystic Fibrosis Canada
- Natural Sciences and Engineering Research Council of Canada
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bacterial biofilms and quorum sensing
- Life Sciences › Agricultural and Biological Sciences › Food Science › Polysaccharides Composition and Applications
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Keywords
- Pseudomonas aeruginosa, protein-protein interaction, biofilm formation, immune evasion, reactive oxygen species scavenging
- MeSH terms
- Acetylation, Alginates, Bacterial Proteins, Protein Processing, Post-Translational, Pseudomonas aeruginosa, Biofilms, Periplasm
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review