Conformational Flexibility and Structural Dynamics in GPCR-Mediated G Protein Activation: A Perspective
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Structure and dynamics of G proteins and their cognate receptors, both alone and in complex, are becoming increasingly accessible to experimental techniques. Understanding the conformational changes and timelines that govern these changes can lead to new insights into the processes of ligand binding and associated G protein activation. Experimental systems may involve the use of, or otherwise stabilize, non-native environments. This can complicate our understanding of structural and dynamic features of processes such as the ionic lock, tryptophan toggle, and G protein flexibility. While elements in the receptor's transmembrane helices and the C-terminal α5 helix of Gα undergo well-defined structural changes, regions subject to conformational flexibility may be important in fine-tuning the interactions between activated receptors and G proteins. The pairing of computational and experimental approaches will continue to provide powerful tools to probe the conformation and dynamics of receptor-mediated G protein activation.
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G proteins directly transmit GPCR signals.
“G proteins directly transmit GPCR signals [1].”
From G protein-coupled receptors function as cell membrane receptors for the steroid hormone 20-hydroxyecdysone (2020) · cites this paper as [1]
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GPCR Dynamics: Structures in Motion
Latorraca, N. R., Venkatakrishnan, A., & Dror, R. O. (2016) · Chemical Reviews · doi:10.1021/acs.chemrev.6b00177 · Cited by 843 · see citing works
Universal allosteric mechanism for Gα activation by GPCRs
Flock, T., Ravarani, C. N. J., Sun, D., Venkatakrishnan, A., Kayikci, M., Tate, C. G., Veprintsev, D. B., & Babu, M. M. (2015) · Nature · doi:10.1038/nature14663 · Cited by 366 · see citing works
Molecular dynamics-driven drug discovery: leaping forward with confidence
Ganesan, A., Coote, M. L., & Barakat, K. (2016) · Drug Discovery Today · doi:10.1016/j.drudis.2016.11.001 · Cited by 358 · see citing works
5-HT2C Receptor Structures Reveal the Structural Basis of GPCR Polypharmacology
Peng, Y., McCorvy, J. D., Harpsøe, K., Lansu, K., Yuan, S., Popov, P. A., Qu, L., Pu, M., Che, T., Nikolajsen, L. F., et al. (2018) · Cell · doi:10.1016/j.cell.2018.01.001 · Cited by 254 · see citing works
Assembly of a GPCR-G Protein Complex
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Structural Basis for G Protein-Coupled Receptor Activation
Manglik, A., & Kruse, A. C. (2017) · Biochemistry · doi:10.1021/acs.biochem.7b00747 · Cited by 195 · see citing works
Harnessing Allostery: A Novel Approach to Drug Discovery
Lu, S., Li, S., & Zhang, J. (2014) · Medicinal Research Reviews · doi:10.1002/med.21317 · Cited by 146 · see citing works
Structural features of the G-protein/GPCR interactions
Moreira, I. S. (2013) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2013.08.027 · Cited by 113 · see citing works
Conformational states of the full-length glucagon receptor
Yang, L., Yang, D., de Graaf, C., Moeller, A., West, G. M., Dharmarajan, V., Wang, C., Siu, F., Song, G., Reedtz‐Runge, S., et al. (2015) · Nature Communications · doi:10.1038/ncomms8859 · Cited by 113 · see citing works
Vaudry, H., Leprince, J., Chatenet, D., Fournier, A., Lambert, D. G., Mével, J. L., Ohlstein, E. H., Schwertani, A. G., Tostivint, H., & Vaudry, D. (2014) · Pharmacological Reviews · doi:10.1124/pr.114.009480 · Cited by 104 · see citing works
Crystal structures of the human neurokinin 1 receptor in complex with clinically used antagonists
Schöppe, J., Ehrenmann, J., Klenk, C., Rucktooa, P., Schütz, M., Dore, A. S., & Plückthun, A. (2018) · Nature Communications · doi:10.1038/s41467-018-07939-8 · Cited by 99 · see citing works
Opioid receptors: Structural and mechanistic insights into pharmacology and signaling
Shang, Y., & Filizola, M. (2015) · European Journal of Pharmacology · doi:10.1016/j.ejphar.2015.05.012 · Cited by 97 · see citing works
Mechanistic Insights into Specific G Protein Interactions with Adenosine Receptors
Wang, J., & Miao, Y. (2019) · The Journal of Physical Chemistry B · doi:10.1021/acs.jpcb.9b04867 · Cited by 97 · see citing works
Kang, X.-L., Zhang, J.-Y., Wang, D., Zhao, Y.-M., Han, X.-L., Wang, J.-X., & Zhao, X.-F. (2019) · PLOS Genetics · doi:10.1371/journal.pgen.1008331 · Cited by 96 · see citing works
Mechanistic Insights into the Allosteric Modulation of Opioid Receptors by Sodium Ions
Shang, Y., Rouzic, V. L., Schneider, S., Bisignano, P., Pasternak, G. W., & Filizola, M. (2014) · Biochemistry · doi:10.1021/bi5006915 · Cited by 92 · see citing works
Bias in chemokine receptor signalling
Zweemer, A. J. M., Toraskar, J., Heitman, L. H., & IJzerman, A. P. (2014) · Trends in Immunology · doi:10.1016/j.it.2014.02.004 · Cited by 85 · see citing works
Structural mechanism of G protein activation by G protein-coupled receptor
Duc, N. M., Kim, H. R., & Chung, K. Y. (2015) · European Journal of Pharmacology · doi:10.1016/j.ejphar.2015.05.016 · Cited by 83 · see citing works
Perez‐Aguilar, J. M., Shan, J., Levine, M. V., Khelashvili, G., & Weinstein, H. (2014) · Journal of the American Chemical Society · doi:10.1021/ja508394x · Cited by 81 · see citing works
Heterotrimeric Gq proteins as therapeutic targets?
Kostenis, E., Pfeil, E. M., & Annala, S. (2020) · Journal of Biological Chemistry · doi:10.1074/jbc.rev119.007061 · Cited by 74 · see citing works
Structural mechanism underlying primary and secondary coupling between GPCRs and the Gi/o family
Kim, H. R., Xu, J. Z., Maeda, S., Duc, N. M., Ahn, D., Du, Y., & Chung, K. Y. (2020) · Nature Communications · doi:10.1038/s41467-020-16975-2 · Cited by 73 · see citing works
Energetic analysis of the rhodopsin–G-protein complex links the α5 helix to GDP release
Alexander, N. S., Preininger, A. M., Kaya, A. İ., Stein, R. A., Hamm, H. E., & Meiler, J. (2013) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2705 · Cited by 69 · see citing works
Self-citationChemistry and Biology of the Initial Steps in Vision: The Friedenwald Lecture
Palczewski, K. (2014) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.14-15502 · Cited by 68 · see citing works
Computational structure‐based drug design: Predicting target flexibility
Iglesias, J., Saen‐oon, S., Soliva, R., & Guallar, V. (2018) · Wiley Interdisciplinary Reviews Computational Molecular Science · doi:10.1002/wcms.1367 · Cited by 65 · see citing works
Simulation of spontaneous G protein activation reveals a new intermediate driving GDP unbinding
Sun, X., Singh, S., Blumer, K., & Bowman, G. R. (2018) · eLife · doi:10.7554/elife.38465 · Cited by 61 · see citing works
Zhao, X.-F. (2020) · Cell Communication and Signaling · doi:10.1186/s12964-020-00620-y · Cited by 60 · see citing works
What can we learn from molecular dynamics simulations for GPCR drug design?
Tautermann, C. S., Seeliger, D., & Kriegl, J. M. (2014) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2014.12.002 · Cited by 60 · see citing works
Quantifying conformational changes in GPCRs: glimpse of a common functional mechanism
Dalton, J. A. R., Lans, I., & Giraldo, J. (2015) · BMC Bioinformatics · doi:10.1186/s12859-015-0567-3 · Cited by 58 · see citing works
A Molecular Pharmacologist’s Guide to G Protein–Coupled Receptor Crystallography
Piscitelli, C. L., Kean, J., de Graaf, C., & Deupí, X. (2015) · Molecular Pharmacology · doi:10.1124/mol.115.099663 · Cited by 49 · see citing works
Pro-phagocytic function and structural basis of GPR84 signaling
Zhang, X., Wang, Y., Supekar, S., Cao, X., Zhou, J., Dang, J., Chen, S., Jenkins, L., Marsango, S., Li, X., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-41201-0 · Cited by 46 · see citing works
Precision vs Flexibility in GPCR signaling
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Bacterial chemoreceptor dynamics correlate with activity state and are coupled over long distances
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Computational Studies of Smell and Taste Receptors
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Kling, R. C., Tschammer, N., Lanig, H., Clark, T., & Gmeiner, P. (2014) · PLoS ONE · doi:10.1371/journal.pone.0100069 · Cited by 37 · see citing works
Martí-Solano, M., Sanz, F., Pastor, M., & Selent, J. (2014) · PLoS ONE · doi:10.1371/journal.pone.0109312 · Cited by 36 · see citing works
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Structural Basis of G Protein-coupled Receptor-Gi Protein Interaction
Mnpotra, J. S., Qiao, Z., Cai, J., Lynch, D. L., Grossfield, A. M., Leioatts, N., Hurst, D. P., Pitman, M. C., Song, Z.-H., & Reggio, P. H. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.539916 · Cited by 35 · see citing works
Ligand Binding Pathways of Clozapine and Haloperidol in the Dopamine D 2 and D 3 Receptors
Thomas, T., Fang, Y., Yuriev, E., & Chalmers, D. K. (2015) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.5b00457 · Cited by 34 · see citing works
Rational design of a heterotrimeric G protein α subunit with artificial inhibitor sensitivity
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Martí-Solano, M., Schmidt, D., Kolb, P., & Selent, J. (2016) · Drug Discovery Today · doi:10.1016/j.drudis.2016.01.009 · Cited by 32 · see citing works
Alchemical Free Energy Calculations on Membrane-Associated Proteins
Papadourakis, M., Sinenka, H., Matricon, P. G., Hénin, J., Brannigan, G. H., Pérez‐Benito, L., Pande, V., van Vlijmen, H., de Graaf, C., Deflorian, F., et al. (2023) · Journal of Chemical Theory and Computation · doi:10.1021/acs.jctc.3c00365 · Cited by 31 · see citing works
Maeda, S., Sun, D., Singhal, A., Foggetta, M., Schmid, G., Standfuss, J., Hennig, M., Dawson, R. J. P., Veprintsev, D. B., & Schertler, G. F. X. (2014) · PLoS ONE · doi:10.1371/journal.pone.0098714 · Cited by 25 · see citing works
An experimental strategy to probe Gq contribution to signal transduction in living cells
Patt, J., Alenfelder, J., Pfeil, E. M., Voss, J. H., Merten, N., Eryilmaz, F., Heycke, N., Rick, U., Inoue, A., Kehraus, S., et al. (2021) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2021.100472 · Cited by 28 · see citing works
Structures in G proteins important for subtype selective receptor binding and subsequent activation
Jelinek, V., Mößlein, N., & Bünemann, M. (2021) · Communications Biology · doi:10.1038/s42003-021-02143-9 · Cited by 25 · see citing works
Prosser, R. S., Ye, L., Pandey, A. N., & Orazietti, A. P. (2017) · BioEssays · doi:10.1002/bies.201700072 · Cited by 25 · see citing works
Conformational switch that induces GDP release from Gi
Ham, D., Ahn, D., Ashim, J., Cho, Y., Kim, H. R., Yu, W., & Chung, K. Y. (2021) · Journal of Structural Biology · doi:10.1016/j.jsb.2020.107694 · Cited by 24 · see citing works
Nicole, P., Couvineau, P., Jamin, N., Voisin, T., & Couvineau, A. (2015) · British Journal of Pharmacology · doi:10.1111/bph.13287 · Cited by 23 · see citing works
Recent Progress in Understanding the Conformational Mechanism of Heterotrimeric G Protein Activation
Duc, N. M., Kim, H. R., & Chung, K. Y. (2016) · Biomolecules & Therapeutics · doi:10.4062/biomolther.2016.169 · Cited by 20 · see citing works
Comprehensive analysis of sphingosine‐1‐phosphate receptor mutants during zebrafish embryogenesis
Hisano, Y., Inoue, A., Taimatsu, K., Ota, S., Ohga, R., Kotani, H., Muraki, M., Aoki, J., & Kawahara, A. (2015) · Genes to Cells · doi:10.1111/gtc.12259 · Cited by 20 · see citing works
The Neurokinin-1 Receptor: Structure Dynamics and Signaling
Rodriguez, F. D., & Coveñas, R. (2022) · Receptors · doi:10.3390/receptors1010004 · Cited by 19 · see citing works
Chaperones and retinal disorders
Sokolov, M., Yadav, R. P., Brooks, C., & Artemyev, N. O. (2018) · Advances in protein chemistry and structural biology · doi:10.1016/bs.apcsb.2018.09.001 · Cited by 18 · see citing works
Unifying view of mechanical and functional hotspots across class A GPCRs
Ponzoni, L., Rossetti, G., Maggi, L., Giorgetti, A., Carloni, P., & Micheletti, C. (2017) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1005381 · Cited by 18 · see citing works
Conformational thermostabilisation of corticotropin releasing factor receptor 1
Kean, J., Bortolato, A., Hollenstein, K., Marshall, F. H., & Jazayeri, A. (2015) · Scientific Reports · doi:10.1038/srep11954 · Cited by 18 · see citing works
Renault, P., Louet, M., Marie, J., Labesse, G., & Floquet, N. (2019) · Scientific Reports · doi:10.1038/s41598-019-41980-x · Cited by 16 · see citing works
Tracking yeast pheromone receptor Ste2 endocytosis using fluorogen-activating protein tagging
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Tauroursodeoxycholic acid binds to the G-protein site on light activated rhodopsin
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Recent advances in computational studies of GPCR-G protein interactions
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Molecular basis for chemokine recognition and activation of XCR1
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Structural approaches to understanding retinal proteins needed for vision
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Optical Approaches for Investigating Neuromodulation and G Protein–Coupled Receptor Signaling
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Gαs slow conformational transition upon GTP binding and a novel Gαs regulator
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Gorbunov, E. A., Ertuzun, I. А., Качаева, Е. В., Тарасов, С. А., & Epstein, O. I. (2015) · Neuropsychiatric Disease and Treatment · doi:10.2147/ndt.s92456 · Cited by 13 · see citing works
G Protein–Coupled Receptor Signaling Networks from a Systems Perspective
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Oxidation of Membrane Lipids Alters the Activity of the Human Serotonin 1A Receptor
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Nullspace Sampling with Holonomic Constraints Reveals Molecular Mechanisms of Protein Gαs
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Biased Agonist TRV027 Determinants in AT1R by Molecular Dynamics Simulations
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Deciphering molecular determinants of GPBAR1-Gs protein interactions by HDX-MS and cryo-EM
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Frustration-guided motion planning reveals conformational transitions in proteins
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Roth, S., & Bruggeman, F. J. (2014) · FEBS Journal · doi:10.1111/febs.12970 · Cited by 8 · see citing works
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Self-citationThe nucleotide‐free state of heterotrimeric G proteins α‐subunit adopts a highly stable conformation
Andhirka, S. K., Vignesh, R., & Aradhyam, G. K. (2017) · FEBS Journal · doi:10.1111/febs.14143 · Cited by 7 · see citing works
The Role and Mechanisms of G protein-coupled receptors in Parkinson's disease
Jing, Y., Yao, P., Zhu, H., Yu, L., Lin, Y., & Kang, D. (2025) · Neurological Sciences · doi:10.1007/s10072-025-08260-1 · Cited by 6 · see citing works
Development of enhanced conformational sampling methods to probe the activation landscape of GPCRs
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Physiological functions and structural features of Gα12/13 proteins
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Modeling and Design for Membrane Protein Targets
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Biased signaling: potential agonist and antagonist of PAR2
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Regulation of Biological Function by Allosteric Interactions
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The Effects of Age on Prostatic Responses to Oxytocin and the Effects of Antagonists
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Les protéines G : les transducteurs privilégiés des récepteurs à sept domaines transmembranaires
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- Authors
- Preininger, A. M., Meiler, J., & Hamm, H. E.
- Affiliations
- Vanderbilt University Medical Center (US)
- Vanderbilt University (US)
- Corresponding author
- Preininger, Anita M.
- Venue
- Journal of Molecular Biology
- Publisher
- Elsevier BV
- Published
- 2013-07
- Volume
- 425
- Issue
- 13
- Pages
- 2288-2298
- ISSN
- 0022-2836 (ISSN-L)
- PMC
- PMC3686903
- OpenAlex
- W2064856742
- Cited by
- 104
- References
- 90
- Citations by year
- 2026: 5 · 2025: 5 · 2024: 3 · 2023: 7 · 2022: 6 · 2021: 5 · 2020: 5 · 2019: 11 · 2018: 9 · 2017: 5 · 2016: 6 · 2015: 15 · 2014: 17 · 2013: 5
- FWCI
- 1.35
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Journal of Molecular Biology (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institute of Mental Health (MH090192, R01MH090192)
- National Eye Institute (EY006062, R01EY006062)
- National Institute of General Medical Sciences (R01GM095633, R01GM099842, R01GM080403, GM 080403, GM099842, GM095633)
- National Institute of Diabetes and Digestive and Kidney Diseases (R01DK097376)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Receptor Mechanisms and Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Keywords
- G protein-coupled receptors, G protein activation, conformational flexibility, structural dynamics, ligand binding, ionic lock, transmembrane helices, receptor-G protein interaction
- MeSH terms
- Allosteric Regulation, Models, Molecular, Protein Conformation, Signal Transduction, Crystallography, X-Ray, GTP-Binding Proteins, Receptors, G-Protein-Coupled, Molecular Dynamics Simulation
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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