Cited by 16Effects of Radiation ExposureRNA Interference and Gene DeliveryImmunotoxicology and immune responses

The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.

Reversing radiation-induced immunosuppression using a new therapeutic modality

Open access

Published version of a preprint

Abstract

Radiation-induced immune suppression poses significant health challenges for millions of patients undergoing cancer chemotherapy and radiotherapy treatment, and astronauts and space tourists travelling to outer space. While a limited number of recombinant protein therapies, such a Sargramostim, are approved for accelerating hematologic recovery, the pronounced role of granulocyte-macrophage colony-stimulating factor (GM-CSF or CSF2) as a proinflammatory cytokine poses additional challenges in creating immune dysfunction towards pathogenic autoimmune diseases. Here we present an approach to high-throughput drug-discovery, target validation, and lead molecule identification using nucleic acid-based molecules. These Nanoligomer™ molecules are rationally designed using a bioinformatics and an artificial intelligence (AI)-based ranking method and synthesized as a single-modality combining 6-different design elements to up- or downregulate gene expression of target gene, resulting in elevated or diminished protein expression of intended target. This method additionally alters related gene network targets ultimately resulting in pathway modulation. This approach was used to perturb and identify the most effective upstream regulators and canonical pathways for therapeutic intervention to reverse radiation-induced immunosuppression. The lead Nanoligomer™ identified in a screen of human donor derived peripheral blood mononuclear cells (PBMCs) upregulated Erythropoietin (EPO) and showed the greatest reversal of radiation induced cytokine changes. It was further tested in vivo in a mouse radiation-model with low-dose (3 mg/kg) intraperitoneal administration and was shown to regulate gene expression of epo in lung tissue as well as counter immune suppression. These results point to the broader applicability of our approach towards drug-discovery, and potential for further investigation of our lead molecule as reversible gene therapy to treat adverse health outcomes induced by radiation exposure.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.lssr.2022.05.002

Cites

3 of 3 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 71

  1. Abel, 2019, Nucleotide and structural label identification in single RNA molecules with quantum tunneling spectroscopy, Chem. Sci., 10, 1052, 10.1039/C8SC03354D · DOI
  2. Afsari, 2017, Quantum point contact single-nucleotide conductance for DNA and RNA sequence identification, ACS Nano, 11, 11169, 10.1021/acsnano.7b05500 · DOI
  3. Aram, 2019, Granulocyte-macrophage colony-stimulating factor as a therapeutic target in multiple sclerosis, Neurol. Ther., 8, 10.1007/s40120-018-0120-1 · DOI
  4. Azria, 2003, Potentiation of ionising radiation by targeting tumour necrosis factor alpha using a bispecific antibody in human pancreatic cancer, Br. J. Cancer, 10.1038/sj.bjc.6601362 · DOI
  5. Belenkov, 2004, Erythropoietin induces cancer cell resistance to ionizing radiation and to cisplatin, Mol. Cancer Ther., 3, 1525, 10.1158/1535-7163.1525.3.12 · DOI
  6. Bennett, 2010, RNA targeting therapeutics: molecular mechanisms of antisense oligonucleotides as a therapeutic platform, Annu. Rev. Pharmacol. Toxicol., 50, 259, 10.1146/annurev.pharmtox.010909.105654 · DOI
  7. Birke, 1967, Catabolism of albumin and gamma globulin after treatment with ionising radiation to the abdomen, Acta Radiol., 6, 113, 10.3109/02841856709138570 · DOI
  8. Bogdándi, 2010, Effects of low-dose radiation on the immune system of mice after total-body irradiation, Radiat. Res., 174, 10.1667/RR2160.1 · DOI
  9. Chatterjee, M.; Chakraborty, T.; Tassone, P. Multiple myeloma: monoclonal antibodies-based immunotherapeutic strategies and targeted radiotherapy. Eur. J. Cancer 2006. 10.1016/j.ejca.2006.02.016. · DOI
  10. Crucian, B.E., Choukèr, A., Simpson, R.J., Mehta, S., Marshall, G., Smith, S.M., Zwart, S.R., Heer, M., Ponomarev, S., Whitmire, A., Frippiat, J.P., Douglas, G., Lorenzi, H., Buchheim, J.I., Makedonas, G., Ginsburg, G.S., Mark Ott, C., Pierson, D.L., Krieger, S.S., Baecker, N., Sams, C. Immune system dysregulation during spaceflight: potential countermeasures for deep space exploration missions. Front. Immunol., 10.3389/fimmu.2018.01437 2018. · DOI · Paper page
  11. Cucinotta, 2010, Space radiation risk limits and earth-moon-mars environmental models, Space Weather, 8, 1, 10.1029/2010SW000572 · DOI
  12. Cui, G. TH9, TH17, and TH22 cell subsets and their main cytokine products in the pathogenesis of colorectal cancer. Front. Oncol. 2019. 10.3389/fonc.2019.01002. · DOI
  13. da Silveira, W.A.; Fazelinia, H.; Rosenthal, S.B.; Laiakis, E.C.; Kim, M.S.; Meydan, C.; Kidane, Y.; Rathi, K.S.; Smith, S.M.; Stear, B.; Ying, Y.; Zhang, Y.; Foox, J.; Zanello, S.; Crucian, B.; Wang, D.; Nugent, A.; Costa, H.A.; Zwart, S.R.; Schrepfer, S.; Elworth, R.A.L.; Sapoval, N.; Treangen, T.; MacKay, M.; Gokhale, N.S.; Horner, S.M.; Singh, L.N.; Wallace, D.C.; Willey, J.S.; Schisler, J.C.; Meller, R.; McDonald, J.T.; Fisch, K.M.; Hardiman, G.; Taylor, D.; Mason, C.E.; Costes, S.V.; Beheshti, A. Comprehensive multi-omics analysis reveals mitochondrial stress as a central biological hub for spaceflight impact. Cell 2020. 10.1016/j.cell.2020.11.002. · DOI
  14. Demidov, 1994, Stability of peptide nucleic acids in human serum and cellular extracts, Biochem. Pharmacol., 48, 1310, 10.1016/0006-2952(94)90171-6 · DOI
  15. Dikmen, 2020, GM-CSF induces noninflammatory proliferation of microglia and disturbs electrical neuronal network rhythms in situ, J. Neuroinflamm., 17, 10.1186/s12974-020-01903-4 · DOI
  16. Dobrovolskaia, 2020, Use of human peripheral blood mononuclear cells to define immunological properties of nucleic acid nanoparticles, Nat. Protoc., 15, 10.1038/s41596-020-0393-6 · DOI
  17. Gale, R.P.; Armitage, J.O. Use of molecularly-cloned haematopoietic growth factors in persons exposed to acute high-dose, high-dose rate whole-body ionizing radiations. Blood Rev.. 2021. 10.1016/j.blre.2020.100690. · DOI
  18. Gavin, 2006, Single-cell analysis of normal and FOXP3-mutant human T cells: FOXP3 expression without regulatory T cell development, Proc. Natl. Acad. Sci. U. S. A., 103, 10.1073/pnas.0509484103 · DOI
  19. Geary, R.S.; Norris, D.; Yu, R.; Bennett, C.F. Pharmacokinetics, biodistribution and cell uptake of antisense oligonucleotides. Adv. Drug Deliv. Rev.. 2015, pp 46–51. 10.1016/j.addr.2015.01.008. · DOI
  20. Geary, R.S.; Yu, R.Z.; Siwkowski, A.; Levin, A.A. Pharmacokinetic/pharmacodynamic properties of phosphorothioate 2′-O-(2-Methoxyethyl)-modified antisense oligonucleotides in animals and man. In Antisense Drug Technology: Principles, Strategies, and Applications, Second Edition; 2007. 10.1201/9780849387951.ch11. · DOI
  21. Ghandhi, 2015, Radiation dose-rate effects on gene expression for human biodosimetry, BMC Med. Genom., 8, 22, 10.1186/s12920-015-0097-x · DOI
  22. Guéguinou, 2009, Could spaceflight-associated immune system weakening preclude the expansion of human presence beyond earth’s orbit?, J. Leukoc. Biol., 10.1189/jlb.0309167 · DOI · Paper page
  23. Ha, 2016, Circulating IL-18 binding protein (IL-18BP) and IL-18 as dual biomarkers of total-body irradiation in mice, Radiat. Res., 185, 10.1667/RR14238.1 · DOI
  24. Ha, 2014, Circulating interleukin-18 as a biomarker of total-body radiation exposure in mice, minipigs, and nonhuman primates (NHP), PLoS One, 9, 10.1371/journal.pone.0109249 · DOI
  25. Hérodin, F.; Bourin, P.; Mayol, J.F.; Lataillade, J.J.; Drouet, M. Short-term injection of antiapoptotic cytokine combinations soon after lethal γ-irradiation promotes survival. Blood 2003. 10.1182/blood-2002-06-1634. · DOI
  26. Hill, 1997, Total body irradiation and acute graft-versus-host disease: the role of gastrointestinal damage and inflammatory cytokines, Blood, 90, 10.1182/blood.V90.8.3204 · DOI
  27. Hyrup, 1996, Peptide nucleic acids (PNA): synthesis, properties and potential applications, Bioorg. Med. Chem., 4, 5, 10.1016/0968-0896(95)00171-9 · DOI
  28. Kaur, P.; Asea, A. Radiation-induced effects and the immune system in cancer. Front. Oncol. 2012, 2. 10.3389/fonc.2012.00191. · DOI
  29. Jin Soo, 1998, The use of erythropoietin in radiation oncology, Cancer Control, 33
  30. Korshoj, 2017, Conformational smear characterization and binning of single-molecule conductance measurements for enhanced molecular recognition, J. Am. Chem. Soc., 139, 15420, 10.1021/jacs.7b08246 · DOI
  31. Korshoj, 2017, Single nucleobase identification using biophysical signatures from nanoelectronic quantum tunneling, Small, 13, 10.1002/smll.201603033 · DOI
  32. Korshoj, 2019, Diagnostic optical sequencing, ACS Appl. Mater. Interfaces, 11, 35587, 10.1021/acsami.9b12568 · DOI
  33. Korshoj, 2019, BOCS: DNA k-Mer content and scoring for rapid genetic biomarker identification at low coverage, Comput. Biol. Med., 110, 196, 10.1016/j.compbiomed.2019.05.022 · DOI
  34. Laiakis, E.C.; Baulch, J.E.; Morgan, W.F. Cytokine and chemokine responses after exposure to ionizing radiation: implications for the astronauts. Adv. Space Res. 2007. 10.1016/j.asr.2006.11.010. · DOI
  35. Lever, 2017, Principal component analysis, Nat. Methods, 14, 641, 10.1038/nmeth.4346 · DOI
  36. Lierova, A.; Jelicova, M.; Nemcova, M.; Proksova, M.; Pejchal, J.; Zarybnicka, L.; Sinkorova, Z. Cytokines and radiation-induced pulmonary injuries. J. Radiat. Res.. 2018. 10.1093/jrr/rry067. · DOI
  37. Lima, 2016, Kinetics of the expressions of radiation-induced plasma proteins of the cardiac territory in electrophoresis, J. Bras. Patol. Med. Lab., 52, 171
  38. Liu, 2020, Effects of low dose radiation on immune cells subsets and cytokines in mice, Toxicol. Res. (Camb)., 9
  39. Lotfi, N.; Thome, R.; Rezaei, N.; Zhang, G.X.; Rezaei, A.; Rostami, A.; Esmaeil, N. Roles of GM-CSF in the pathogenesis of autoimmune diseases: an update. Front. Immunol. 2019. 10.3389/fimmu.2019.01265. · DOI
  40. Makedonas, G.; Mehta, S.; Choukèr, A.; Simpson, R.J.; Marshall, G.; Orange, J.S.; Aunon-Chancellor, S.; Smith, S.M.; Zwart, S.R.; Stowe, R.P.; Heer, M.; Ponomarev, S.; Whitmire, A.; Frippiat, J.P.; Douglas, G.L.; Krieger, S.S.; Lorenzi, H.; Buchheim, J.I.; Ginsburg, G.S.; Ott, C.M.; Downs, M.; Pierson, D.; Baecker, N.; Sams, C.; Crucian, B. Specific immunologic countermeasure protocol for deep-space exploration missions. Front. Immunol. 2019. 10.3389/fimmu.2019.02407. · DOI
  41. McKelvey, 2018, Radiation, inflammation and the immune response in cancer, Mamm. Genome., 10.1007/s00335-018-9777-0 · DOI
  42. Meng, 2017, RNA interference-induced innate immunity, off-target effect, or immune adjuvant?, Front. Immunol., 8, 1
  43. Michnik, 2013, Effects of low-dose ionizing radiation on α,β-globulins solutions studied by DSC, J. Therm. Anal. Calorim., 111, 1845, 10.1007/s10973-012-2687-6 · DOI
  44. Multhoff, G.; Radons, J. Radiation, inflammation, and immune responses in cancer. Front. Oncol. 2012. 10.3389/fonc.2012.00058. · DOI
  45. Neff, C.P.; Rhodes, M.E.; Arnolds, K.L.; Collins, C.B.; Donnelly, J.; Nusbacher, N.; Jedlicka, P.; Schneider, J.M.; McCarter, M.D.; Shaffer, M.; Mazmanian, S.K.; Palmer, B.E.; Lozupone, C.A. Diverse intestinal bacteria contain putative zwitterionic capsular polysaccharides with anti-inflammatory properties. Cell Host Microbe 2016. 10.1016/j.chom.2016.09.002. · DOI
  46. Neta, R.; Oppenheim, J.J.; Douches, S.D. Interdependence of the radioprotective effects of human recombinant interleukin 1 alpha, tumor necrosis factor alpha, granulocyte colony-stimulating factor, and murine recombinant granulocyte-macrophage colony-stimulating factor. J. Immunol. 1988. · DOI
  47. Neta, R.; Oppenheim, J.J.; Schreiber, R.D.; Chizzonite, R.; Ledney, G.D.; MacVittie, T.J. Role of cytokines (Interleukin 1, tumor necrosis factor, and transforming growth factor β) in natural and lipopolysaccharide-enhanced radioresistance. J. Exp. Med. 1991. 10.1084/jem.173.5.1177. · DOI
  48. Nielsen, P.E.; Egholm, M.; Berg, R.H.; Buchardt, O. Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide. Science (80-.). 1991, 254 (5037), 1497–1500. 10.1126/science.1962210. · DOI · Paper page
  49. Pan, 2020, Radiation exposure–induced changes in the immune cells and immune factors of mice with or without primary lung tumor, Dose Response, 18, 10.1177/1559325820926744 · DOI
  50. Reeves, 2014, Overview of use of G-CSF and GM-CSF in the treatment of acute radiation injury, Health Phys., 106, 10.1097/HP.0000000000000090 · DOI
  51. Ruef, 1991, [GM-CSF and G-CSF: cytokines in clinical application], Schweiz. Med. Wochenschr., 121, 397
  52. Sakaguchi, S.; Miyara, M.; Costantino, C.M.; Hafler, D.A. FOXP3 + regulatory T cells in the human immune system. Nat. Rev. Immunol. 2010. 10.1038/nri2785. · DOI
  53. Schaue, D.; Kachikwu, E.L.; McBride, W.H. Cytokines in radiobiological responses: a review. Radiat. Res. 2012. 10.1667/RR3031.1. · DOI
  54. Schroecksnadel, 2005, Aspirin down-regulates tryptophan degradation in stimulated human peripheral blood mononuclear cells in vitro, Clin. Exp. Immunol., 140, 10.1111/j.1365-2249.2005.02746.x · DOI
  55. Sen, P.; Kemppainen, E.; Orešič, M. Perspectives on systems modeling of human peripheral blood mononuclear cells. Front. Mol. Biosci. 2018. 10.3389/fmolb.2017.00096. · DOI
  56. Shay, 2011, From mice and men to earth and space: joint NASA-NCI workshop on lung cancer risk resulting from space and terrestrial radiation, Cancer Res., 71, 10.1158/0008-5472.CAN-11-2546 · DOI
  57. Shimura, 2019, Epicatechin as a promising agent to countermeasure radiation exposure by mitigating mitochondrial damage in human fibroblasts and mouse hematopoietic cells, FASEB J., 33, 10.1096/fj.201802246RR · DOI
  58. Shiomi, 2016, GM-CSF as a therapeutic target in autoimmune diseases, Inflamm. Regen., 36, 10.1186/s41232-016-0014-5 · DOI
  59. Singh, V.K.; Mehrotra, S.; Agarwal, S.S. The paradigm of Th1 and Th2 cytokines: its relevance to aotoimmunity and allergy. Immunol. Res. 1999. 10.1007/bf02786470. · DOI
  60. Singh, 2015, Colony-stimulating factors for the treatment of the hematopoietic component of the acute radiation syndrome (H-ARS): a review, Cytokine, 71, 22, 10.1016/j.cyto.2014.08.003 · DOI
  61. Singh, V.K.; Romaine, P.L.P.; Seed, T.M. Medical countermeasures for radiation exposure and related injuries: characterization of medicines, FDA-approval status and inclusion into the strategic national stockpile. Health Phys. 2015. 10.1097/HP.0000000000000279. · DOI
  62. Sioud, 2005, Induction of inflammatory cytokines and interferon responses by double-stranded and single-stranded SiRNAs is sequence-dependent and requires endosomal localization, J. Mol. Biol., 348, 1079, 10.1016/j.jmb.2005.03.013 · DOI
  63. Smirnov, 2009, Genetic analysis of radiation-induced changes in human gene expression, Nature, 459, 587, 10.1038/nature07940 · DOI
  64. Stanishevsky, 2002, Radiation damage and its recovery in focused ion beam fabricated ferroelectric capacitors, J. Appl. Phys., 92, 3275, 10.1063/1.1489069 · DOI
  65. Szklarczyk, 2015, STRING V10: protein-protein interaction networks, integrated over the tree of life, Nucleic Acids Res., 43, 10.1093/nar/gku1003 · DOI · Paper page
  66. Thompson, 2012, Toxicological and pharmacokinetic properties of chemically modified SiRNAs targeting P53 RNA following intravenous administration, Nucleic Acid Ther., 22, 10.1089/nat.2012.0371 · DOI
  67. Vuong, C.; Saenz, H.L.; Götz, F.; Otto, M. Reactivation and shedding of cytomegalovirus in astronauts during spaceflight. J. Infect. Dis. 2000. 10.1086/317624. · DOI
  68. Weiss, J.F.; Kumar, K.S.; Walden, T.L.; Neta, R.; Landauer, M.R.; Clark, E.P. Advances in radioprotection through the use of combined agent regimens. Int. J. Radiat. Biol. 1990. 10.1080/09553009014550881. · DOI
  69. Ye, 2018, Circulating Th1, Th2, Th9, Th17, Th22, and Treg levels in aortic dissection patients, Mediators Inflamm., 2018, 10.1155/2018/5697149 · DOI
  70. Zhao, 2014, Quantification of plasma HIV RNA using chemically engineered peptide nucleic acids, Nat. Commun., 5, 5079, 10.1038/ncomms6079 · DOI
  71. Weiss, 2000, Radioprotection by antioxidants, Ann. N. Y. Acad. Sci., 10.1111/j.1749-6632.2000.tb06175.x · DOI

Cited by

Sorted by citations

Metadata

Authors
Courtney, C. M., Sharma, S., Fallgren, C., Weil, M. M., Chatterjee, A., & Nagpal, P.
Affiliations
  • BioWorks (United States) (US)
  • Colorado State University (US)
Corresponding author
Nagpal, Prashant
Venue
Life Sciences in Space Research
Publisher
Elsevier BV
Published
2022-11
Volume
35
Pages
127-139
ISSN
2214-5524 (ISSN-L)
OpenAlex
W4280521825
Cited by
16
References
3
Citations by year
2024: 10 · 2023: 1 · 2022: 5
FWCI
2.29
Type
journal article
Language
en
Open access
Locations
  • Life Sciences in Space Research (publishedVersion, cc-by-nc-nd)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed (publishedVersion)
Funders
National Aeronautics and Space Administration (80NSSC21C0242, NNX15AK13G)
Topics
  • Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Effects of Radiation Exposure
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
  • Life Sciences › Immunology and Microbiology › Immunology › Immunotoxicology and immune responses
Keywords
radiation-induced immunosuppression, nucleic acid therapeutics, GM-CSF, erythropoietin, gene expression modulation, peripheral blood mononuclear cells, gene therapy, space radiation, astronaut health
MeSH terms
Animals, Artificial Intelligence, Humans, Immunosuppression Therapy, Leukocytes, Mononuclear, Recombinant Proteins, Granulocyte Colony-Stimulating Factor, Cytokines, Mice

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review