A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation
Ponder, Rebecca G., Fonville, Natalie C., Rosenberg, Susan M.·2005·Molecular Cell
Cited by (257)
Items 101–200 of 257
- Specialised DNA polymerases in Escherichia coli: roles within multiple pathwaysSarah S. Henrikus, Antoine M. van Oijen, Andrew Robinson · 2018 · Current Genetics
- Adaptive Evolution: How Bacteria and Cancer Cells Survive Stressful Conditions and Drug TreatmentMariangela Russo, Alberto Sogari, Alberto Bardelli · 2021 · Cancer Discovery
- A strategically located serine residue is critical for the mutator activity of DNA polymerase IV from Escherichia coliAmit S. Sharma, Jithesh Kottur, Naveen Narayanan, Deepak T. Nair · 2013 · Nucleic Acids Research
- Roles of E. coli double-strand-break-repair proteins in stress-induced mutationAlbert S. He, Pooja R. Rohatgi, Megan N. Hersh, Susan M. Rosenberg · 2005 · DNA repair
- Defects in the Error Prevention Oxidized Guanine System Potentiate Stationary-Phase Mutagenesis in Bacillus subtilisLuz Elena Vidales-Rodríguez, Lluvia C. Cárdenas, Eduardo A. Robleto, Ronald E. Yasbin, Mario Pedraza‐Reyes · 2008 · Journal of Bacteriology
- The Origin of Mutants Under Selection: How Natural Selection Mimics Mutagenesis (Adaptive Mutation)Sophie Maisnier‐Patin, John R. Roth · 2015 · Cold Spring Harbor Perspectives in Biology
- The DNA polymerase III holoenzyme contains γ and is not a trimeric polymerasePaul R. Dohrmann, Raul Correa, Ryan L. Frisch, Susan M. Rosenberg, Charles S. McHenry · 2016 · Nucleic Acids Research
- Amplification of lac Cannot Account for Adaptive Mutation to Lac + in Escherichia coliJeffrey D. Stumpf, Anthony R. Poteete, Patricia L. Foster · 2007 · Journal of Bacteriology
- Plant origin and ploidy influence gene expression and life cycle characteristics in an invasive weedAmanda K. Broz, Daniel K. Manter, Gillianne Bowman, Heinz Müller‐Schärer, Jorge M. Vivanco · 2009 · BMC Plant Biology
- Regulation of the error-prone DNA polymerase Polκ by oncogenic signaling and its contribution to drug resistanceKelsey Temprine, Nathaniel R. Campbell, Ting Hsiang Huang, Erin M. Langdon, Theresa Simon-Vermot, Krisha Mehta, Averill Clapp, Mollie E. Chipman, Richard Mark White · 2020 · Science Signaling
- XthA (Exonuclease III) regulates loading of RecA onto DNA substrates in log phase Escherichia coli cellsRichard C. Centore, Roxane Lestini, Steven J. Sandler · 2007 · Molecular Microbiology
- Persistent damaged bases in DNA allow mutagenic break repair in Escherichia coliJessica M. Moore, Raul Correa, Susan M. Rosenberg, P. J. Hastings · 2017 · PLoS Genetics
- Fragile DNA Motifs Trigger Mutagenesis at Distant Chromosomal Loci in Saccharomyces cerevisiaeNatalie Saini, Yu Zhang, Yuri Nishida, Ziwei Sheng, Shilpa Choudhury, Piotr A. Mieczkowski, Kirill S. Lobachev · 2013 · PLoS Genetics
- A mechanism of transposon‐mediated directed mutationZhongge Zhang, Milton H. Saier · 2009 · Molecular Microbiology
- Preferential D-loop extension by a translesion DNA polymerase underlies error-prone recombinationRichard T. Pomerantz, Isabel Kurth, Myron F. Goodman, Mike E. O’Donnell · 2013 · Nature Structural & Molecular Biology
- Stress-Induced Loss of Heterozygosity in
<i>Candida</i>
: a Possible Missing Link in the Ability to EvolveRosenberg, Susan M. · 2011 · mBio
- Frequent Beneficial Mutations during Single-Colony Serial Transfer of Streptococcus pneumoniaeKathleen E. Stevens, Michael Sebert · 2011 · PLoS Genetics
- Is sulfidation a true detoxification process for silver nanoparticles?: from the perspective of chronic exposureMingzhu Li, Jing Li, Jing Sun, Yuning He, Pengjia Chen, Chengdong Zhang · 2019 · Environmental Science Nano
- Epigenetic Influence of Dam Methylation on Gene Expression and Attachment in Uropathogenic Escherichia coliS. Stephenson, Paul D. Brown · 2016 · Frontiers in Public Health
- Transcriptional De-Repression and Mfd Are Mutagenic in Stressed Bacillus subtilis CellsHolly Anne Martin, Mario Pedraza‐Reyes, Ronald E. Yasbin, Eduardo A. Robleto · 2011 · Microbial Physiology
- Hypermutagenesis in mutA cells is mediated by mistranslational corruption of polymerase, and is accompanied by replication fork collapseAbu Amar M. Al Mamun, Satyendra Gautam, M. Zafri Humayun · 2006 · Molecular Microbiology
- Multiple Strategies for Translesion Synthesis in BacteriaPaul J. Ippoliti, Nicholas A. DeLateur, Kathryn M. Jones, Penny J. Beuning · 2012 · Cells
- ppGpp and RNA-polymerase backtracking guide antibiotic-induced mutable gambler cellsYin Zhai, P.J. Minnick, John P. Pribis, Libertad Garcı́a-Villada, P. J. Hastings, Christophe Herman, Susan M. Rosenberg · 2023 · Molecular Cell
- Double Trouble: Medical Implications of Genetic Duplication and Amplification in BacteriaSarah H. Craven, Ellen L. Neidle · 2007 · Future Microbiology
- Stress-Induced Modulators of Repeat Instability and Genome EvolutionNatalie C. Fonville, R. Matthew Ward, David Mittelman · 2011 · Microbial Physiology
- Drugging evolution of antibiotic resistance at a regulatory network hubYin Zhai, John P. Pribis, Sean W. Dooling, Libertad Garcı́a-Villada, P.J. Minnick, Jun Xia, Jingjing Liu, Qian Mei, Devon M. Fitzgerald, Christophe Herman et al. · 2023 · Science Advances
- Interactions and Localization of Escherichia coli Error-Prone DNA Polymerase IV after DNA DamageSarita Mallik, Ellen M. Popodi, Andrew J. Hanson, Patricia L. Foster · 2015 · Journal of Bacteriology
- Characterization of metabolic responses, genetic variations, and microsatellite instability in ammonia-stressed CHO cells grown in fed-batch culturesDylan G. Chitwood, Qinghua Wang, Kathryn S. Elliott, Aiyana Bullock, Dwon Jordana, Zhigang Li, Cathy H. Wu, Sarah W. Harcum, Christopher A. Saski · 2021 · BMC Biotechnology
- Antibiotic-recalcitrant Salmonella during infectionRachel T. Giorgio, Sophie Hélaine · 2024 · Nature Reviews Microbiology
- Bioenergetic stress potentiates antimicrobial resistance and persistenceBarry Li, Shivani Srivastava, Mustafa Shaikh, Gautam Mereddy, Madison R. Garcia, Eric N. Chiles, Avi Shah, Boatema Ofori-Anyinam, Tingyu Chu, Nicole J Cheney et al. · 2025 · Nature Communications
- Genomic deletions and point mutations induced in Saccharomyces cerevisiae by the trinucleotide repeats (GAA·TTC) associated with Friedreich's ataxiaWei Tang, Margaret Dominska, Małgorzata Gaweł, Patricia W. Greenwell, Thomas D. Petes · 2012 · DNA repair
- Dealing with oxidative stress and iron starvation in microorganisms: an overviewThis review is one of a selection of papers published in a Special Issue on Oxidative Stress in Health and Disease.Julie-Anna M. Benjamin, Guillaume Desnoyers, Audrey Morissette, Hubert Salvail, Éric Massé · 2010 · Canadian Journal of Physiology and Pharmacology
- Accelerated rates of large-scale mutations in the presence of copper and nickelFrédéric J. J. Chain, Jullien M. Flynn, James K. Bull, Melania E. Cristescu · 2018 · Genome Research
- Multiple genetic switches spontaneously modulating bacterial mutabilityFang Chen, Weiqiao Liu, A. Eisenstark, Randal N. Johnston, Gui‐Rong Liu, Shu‐Lin Liu · 2010 · BMC Evolutionary Biology
- Gene Expression Variability Underlies Adaptive Resistance in Phenotypically Heterogeneous Bacterial PopulationsKeesha E. Erickson, Peter B. Otoupal, Anushree Chatterjee · 2015 · ACS Infectious Diseases
- Ongoing evolution of Pseudomonas aeruginosa PAO1 sublines complicates studies of DNA damage repair and toleranceJulia Sidorenko, Tatjana Jatsenko, Maia Kivisaar · 2017 · Mutation research. Fundamental and molecular mechanisms of mutagenesis
- Stress-induced mutagenesis: Stress diversity facilitates the persistence of mutator genesMarta Lukačišinová, Sebastian Novak, Tiago Paixão · 2017 · PLoS Computational Biology
- Protecting exons from deleterious R-loops: a potential advantage of having intronsDeng‐Ke Niu · 2007 · Biology Direct
- Roles of Nucleoid-Associated Proteins in Stress-Induced Mutagenic Break Repair in StarvingEscherichia coliJessica M. Moore, David R. Magnan, Ana K Mojica, María Angélica Bravo Núñez, David B. Bates, Susan M. Rosenberg, P. J. Hastings · 2015 · Genetics
- Mutation Frequency and Spectrum of Mutations Vary at Different Chromosomal Positions of Pseudomonas putidaTriinu Juurik, Heili Ilves, Riho Teras, Tanel Ilmjärv, Kairi Tavita, Kärt Ukkivi, Annika Teppo, Katren Mikkel, Maia Kivisaar · 2012 · PLoS ONE
- DNA polymerases are error-prone at RecA-mediated recombination intermediatesRichard T. Pomerantz, Myron F. Goodman, Mike E. O’Donnell · 2013 · Cell Cycle
- Epistatic Roles for Pseudomonas aeruginosa MutS and DinB (DNA Pol IV) in Coping with Reactive Oxygen Species-Induced DNA DamageLaurie H. Sanders, Babho Devadoss, Geraldine V. Raja, Jaime O'Connor, Shengchang Su, Daniel J. Wozniak, Daniel J. Hassett, Anthony J. Berdis, Mark D. Sutton · 2011 · PLoS ONE
- Translesion DNA SynthesisAlexandra Vaisman, John P. McDonald, Roger Woodgate · 2012 · EcoSal Plus
- NHEJ enzymes LigD and Ku participate in stationary-phase mutagenesis in Pseudomonas putidaÜlvi Paris, Katren Mikkel, Kairi Tavita, Signe Saumaa, Riho Teras, Maia Kivisaar · 2015 · DNA repair
- Global Chromosomal Structural Instability in a Subpopulation of Starving Escherichia coli CellsDongxu Lin, Ian B. Gibson, Jessica M. Moore, Philip C. Thornton, Suzanne M. Leal, P. J. Hastings · 2011 · PLoS Genetics
- Programmed Genetic Instability: A Tumor-Permissive Mechanism for Maintaining the Evolvability of Higher Species through Methylation-Dependent Mutation of DNA Repair Genes in the Male Germ LineY. Zhao, Richard J. Epstein · 2008 · Molecular Biology and Evolution
- In Darwinian evolution, feedback from natural selection leads to biased mutationsLynn Helena Caporale, John C. Doyle · 2013 · Annals of the New York Academy of Sciences
- What Limits the Efficiency of Double-Strand Break-Dependent Stress-Induced Mutation in Escherichia coliChandan Shee, Rebecca G. Ponder, Janet L. Gibson, Susan M. Rosenberg · 2011 · Microbial Physiology
- The architecture of clonal expansions in morphologically normal tissue from cancerous and non-cancerous prostatesClaudia Buhigas, Anne Yvonne Warren, Wing‐Kit Leung, Hayley C. Whitaker, Hayley J. Luxton, Steve F. C. Hawkins, Jonathan D. Kay, Adam P. Butler, Yaobo Xu, Dan J. Woodcock et al. · 2022 · Molecular Cancer
- Single-molecule live-cell imaging reveals RecB-dependent function of DNA polymerase IV in double strand break repairSarah S. Henrikus, Camille Henry, Amy E. McGrath, Slobodan Jergic, John P. McDonald, Yvonne Hellmich, Steven T. Bruckbauer, Matthew L Ritger, Megan E Cherry, Elizabeth Anne Wood et al. · 2020 · Nucleic Acids Research
- The Small RNA GcvB Promotes Mutagenic Break Repair by Opposing the Membrane Stress ResponseBrittany Barreto, Elizabeth J. Rogers, Jun Xia, Ryan L. Frisch, Megan M. Richters, Devon M. Fitzgerald, Susan M. Rosenberg · 2016 · Journal of Bacteriology
- Elevated Mutation Frequency in Surviving Populations of Carbon-Starved rpoS -Deficient Pseudomonas putida Is Caused by Reduced Expression of Superoxide Dismutase and CatalaseKairi Tarassova, Radi Tegova, Andres Tover, Riho Teras, Mariliis Tark‐Dame, Signe Saumaa, Maia Kivisaar · 2009 · Journal of Bacteriology
- An Assessment of the Role of DNA Adenine Methyltransferase on Gene Expression Regulation in E coliAswin Sai Narain Seshasayee · 2007 · PLoS ONE
- The SMC-Like Protein Complex SbcCD Enhances DNA Polymerase IV-Dependent Spontaneous Mutation inEscherichia coliKimberly A. M. Storvik, Patricia L. Foster · 2010 · Journal of Bacteriology
- mutL as a genetic switch of bacterial mutability: turned on or off through repeat copy number changesFang Chen, Weiqiao Liu, Zhenhong Liu, Qing-Hua Zou, Ye Wang, Yongguo Li, Jin J. Zhou, A. Eisenstark, Randal N. Johnston, Gui‐Rong Liu et al. · 2010 · FEMS Microbiology Letters
- Role of Ribonucleotide Reductase in Bacillus subtilis Stress-Associated MutagenesisKarla Viridiana Castro-Cerritos, Ronald E. Yasbin, Eduardo A. Robleto, Mario Pedraza‐Reyes · 2016 · Journal of Bacteriology
- Residues in the fingers domain of the translesion DNA polymerase DinB enable its unique participation in error-prone double-strand break repairTommy F. Tashjian, Claudia Danilowicz, Anne-Elisabeth Molza, Brian H. Nguyen, Chantal Prévost, Mara Goff Prentiss, Veronica G. Godoy · 2019 · Journal of Biological Chemistry
- Bacterial Stationary-State Mutagenesis and Mammalian Tumorigenesis as Stress-Induced Cellular Adaptations and the Role of EpigeneticsTatiana V. Karpinets, D. Greenwood, Igor P. Pogribny, Nagiza F. Samatova · 2006 · Current Genomics
- Effect of Translesion DNA Polymerases, Endonucleases and RpoS on Mutation Rates inSalmonella typhimuriumSanna Koskiniemi, Diarmaid Hughes, Dan I. Andersson · 2010 · Genetics
- Translesion DNA polymerases are required for spontaneous deletion formation in Salmonella typhimuriumSanna Koskiniemi, Dan I. Andersson · 2009 · Proceedings of the National Academy of Sciences
- RecJ nuclease is required for SOS induction after introduction of a double-strand break in a RecA loading deficient recB mutant of Escherichia coliIgnacija Vlašić, Ivana Ivančić-Baće, Mirna Imešek, Boris Mihaljević, Krunoslav Brčić-Kostić · 2008 · Biochimie
- Bacterial Stress Responses as Determinants of Antimicrobial ResistanceMichael Fruci, Keith Poole · 2016
- Adaptive Resistance Mutations at Suprainhibitory Concentrations Independent of SOS MutagenesisRicardo Gutiérrez, Yoav Ram, Judith G. Berman, Keyla Carstens Marques de Sousa, Yaarit Nachum‐Biala, Malka Britzi, D. Elad, Gad Glaser, Shay Covo, Shimon Harrus · 2021 · Molecular Biology and Evolution
- Stress, genomes, and evolutionDavid Mittelman, John H. Wilson · 2010 · Cell Stress and Chaperones
- Migrating bubble synthesis promotes mutagenesis through lesions in its templateBeth Osia, Jerzy M. Twarowski, Tyler Jackson, Kirill S. Lobachev, Liping Liu, Anna Malkova · 2022 · Nucleic Acids Research
- What Have Studies of Genomic Disorders Taught Us About Our Genome?Alexandra D. Simmons, Claudia M.B. Carvalho, James R. Lupski · 2011 · Methods in molecular biology
- Role for DNA double strand end-resection activity of RecBCD in control of aberrant chromosomal replication initiation in Escherichia coliSayantan Goswami, Jayaraman Gowrishankar · 2022 · Nucleic Acids Research
- Escherichia coli DinB inhibits replication fork progression without significantly inducing the SOS responseTetsuya Mori, Tatsuro Nakamura, Naoto Okazaki, Asako Furukohri, Hisaji Maki, Masahiro Tatsumi Akiyama · 2012 · Genes & Genetic Systems
- Mfd and transcriptional derepression cause genetic diversity in Bacillus subtilisA. Robleto Eduardo · 2011 · Frontiers in Bioscience-Elite
- Atypical Role for PhoU in Mutagenic Break Repair under Stress in Escherichia coliJanet L. Gibson, Mary‐Jane Lombardo, Ildiko Aponyi, Diana Vera Cruz, Mellanie P. Ray, Susan M. Rosenberg · 2015 · PLoS ONE
- Mfd and transcriptional derepression cause genetic diversity in Bacillus subtilisEduardo A. Robleto · 2012 · Frontiers in Bioscience-Elite
- Single-Strand-Specific Exonucleases Prevent Frameshift Mutagenesis by Suppressing SOS Induction and the Action of DinB/DNA Polymerase IV in Growing CellsMegan N. Hersh, Liza D. Morales, Kimberly J. Ross, Susan M. Rosenberg · 2006 · Journal of Bacteriology
- Oxygen and RNA in stress-induced mutationRaul Correa, Philip C. Thornton, Susan M. Rosenberg, P. J. Hastings · 2018 · Current Genetics
- Stress‐induced cellular adaptive strategies: Ancient evolutionarily conserved programs as new anticancer therapeutic targetsArcadi Cipponi, David Morgan Thomas · 2014 · BioEssays
- Clay-induced DNA breaks as a path for genetic diversity, antibiotic resistance, and asbestos carcinogenesisEnrique González-Tortuero, Jerónimo Rodríguez-Beltrán, Renate Radek, Jesús Blázquez, Alexandro Rodríguez-Rojas · 2018 · Scientific Reports
- Essential Role for an Isoform of Escherichia coli Translation Initiation Factor IF2 in Repair of Two-Ended DNA Double-Strand BreaksJillella Mallikarjun, Jayaraman Gowrishankar · 2022 · Journal of Bacteriology
- Direct visualization of translesion DNA synthesis polymerase IV at the replisomePham Minh Tuan, Neville S. Gilhooly, Kenneth J. Marians, Stephen C. Kowalczykowski · 2022 · Proceedings of the National Academy of Sciences
- DNA double-strand breaks induced by reactive oxygen species promote DNA polymerase IV activity in Escherichia coliSarah S. Henrikus, Camille Henry, John P. McDonald, Yvonne Hellmich, Elizabeth Anne Wood, Roger Woodgate, Michael Matthew Cox, Antoine M. van Oijen, Harshad B. Ghodke, Andrew Robinson · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Zinc Regulates the Stability of Repetitive Minisatellite DNA Tracts During Stationary PhaseMaire K. Kelly, Peter A. Jauert, Linnea E Jensen, Christine L. Chan, Chinh S Truong, David T. Kirkpatrick · 2007 · Genetics
- Integration Host Factor IHF facilitates homologous recombination and mutagenic processes in Pseudomonas putidaKatren Mikkel, Mari Tagel, Kärt Ukkivi, Heili Ilves, Maia Kivisaar · 2019 · DNA repair
- Genotoxic Agents Produce Stressor-Specific Spectra of Spectinomycin Resistance Mutations Based on Mechanism of Action and Selection in Bacillus subtilisBenjamin J. Korry, Stella Ye Eun Lee, Amit K. Chakrabarti, Ashley H Choi, Collin Ganser, Jason T. Machan, Peter A. Belenky · 2021 · Antimicrobial Agents and Chemotherapy
- Genome instability in bacteria: Causes and consequencesAndrey Golubov · 2021 · Elsevier eBooks
- Monotonicity of fitness landscapes and mutation rate controlRoman V. Belavkin, Alastair Channon, Elizabeth Aston, John A. D. Aston, Rok Krašovec, Knight Cg · 2016 · Journal of Mathematical Biology
- Extreme Genome RepairRodrigo S. Galhardo, Susan M. Rosenberg · 2009 · Cell
- Colibactin leads to a bacteria-specific mutation pattern and self-inflicted DNA damageEmily Lowry, Yiqing Wang, Tal Dagan, Amir Mitchell · 2024 · Genome Research
- Minisatellite alterations in ZRT1 mutants occur via RAD52-dependent and RAD52-independent mechanisms in quiescent stationary phase yeast cellsMaire K. Kelly, Bonnie Alver, David T. Kirkpatrick · 2011 · DNA repair
- The origin of genetic and metabolic systems: Evolutionary structuralinsightsShaojie Deng · 2023 · Heliyon
- Nitrogen starvation reveals the mitotic potential of mutants in the S/MAPK pathwaysRostyslav Makarenko, Claire Denis, Stefania Francesconi, Serge Gangloff, Benoı̂t Arcangioli · 2020 · Nature Communications
- Evolutionary dynamics and information hierarchies in biological systemsSara Imari Walker, Benjamin J. Callahan, Gaurav Arya, J. David Barry, Tanmoy Bhattacharya A, Sergei A. Grigoryev, Matteo A. Pellegrini, Karsten Rippe, Susan M. Rosenberg · 2013 · Annals of the New York Academy of Sciences
- Selective Inbreeding: Genetic Crosses Drive Apparent Adaptive Mutation in the Cairns-Foster System of Escherichia coliAmanda Nguyen, Sophie Maisnier‐Patin, Itsugo Yamayoshi, Eric Kofoid, John R. Roth · 2019 · Genetics
- The Bacillus Subtilis K-State Promotes Stationary-Phase Mutagenesis via Oxidative DamageHolly Anne Martin, Amanda A. Kidman, Jillian N. Socea, Carmen Vallin, Mario Pedraza‐Reyes, Eduardo A. Robleto · 2020 · Genes
- Bioinvaders: The acquisition of new genetic variationJulio Eduardo Pérez, Carmen Alfonsi, Mauro Nirchio, Sinatra K. Salazar · 2008 · Interciencia
- Accelerating cancer evolution: a dark side of SIRT1 in genome maintenanceWenyong Chen · 2012 · Oncotarget
- An Approximate Algorithm Combining P Systems and Active Evolutionary Algorithms for Traveling Salesman ProblemsXiaoxiao Song, Jun Wang · 2014 · International Journal of Computers Communications & Control
- Selection-Enhanced Mutagenesis of lac Genes Is Due to Their Coamplification with dinB Encoding an Error-Prone DNA PolymeraseItsugo Yamayoshi, Sophie Maisnier‐Patin, John R. Roth · 2018 · Genetics
- Repurposing the Homing Endonuclease I-SceI for Positive Selection and Development of Gene-Editing TechnologiesKok Zhi Lee, Michael A. Mechikoff, Mrugesh Krishna Parasa, Tyler J. Rankin, Paula Pandolfi, Kevin Fitzgerald, Ethan T. Hillman, Kevin Solomon · 2022 · ACS Synthetic Biology
- Gross chromosomal rearrangement mediated by DNA replication in stressed cells: evidence from Escherichia coliJessica M. Moore, Hallie Wimberly, Philip C. Thornton, Susan M. Rosenberg, P. J. Hastings · 2012 · Annals of the New York Academy of Sciences
- Quantum Coherence in Biological SystemsElisabeth Rieper · 2011
- Is Natural Selection still have to be Regarded A Foundation Stone of Evolutionary Process?Andrei I. Granovitch · 2018 · Journal of Evolutionary Science
- Fluorescent fusions of the N protein of phage Mu label DNA damage in living cellsMatthew V. Kotlajich, Jun Xia, Yin Zhai, Hsin-Yu Lin, Catherine C. Bradley, Xi Hua Shen, Qian Mei, Anthony Z. Wang, Erica J. Lynn, Chandan Shee et al. · 2018 · DNA repair