Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks

Cited by (397)

Items 101–200 of 397

1. Molecular Principles of Gene Fusion Mediated Rewiring of Protein Interaction Networks in Cancer
   Natasha S. Latysheva, Matt E. Oates, Louis Maddox, Tilman Flock, Julian Gough, Marija Buljan, Robert J. Weatheritt, M. Madan Babu · 2016 · Molecular Cell
2. RNA splicing programs define tissue compartments and cell types at single-cell resolution
   Julia Eve Olivieri, Roozbeh Dehghannasiri, Peter Lincoln Wang, SoRi Jang, Antoine de Morrée, Serena Y. Tan, Jingsi Ming, Angela Ruohao Wu, Stephen R. Quake, Mark A. Krasnow et al. · 2021 · eLife
3. Acquired resistance to KRAS G12C small-molecule inhibitors via genetic/nongenetic mechanisms in lung cancer
   Mohanty, Atish, Nam, Arin, Srivastava, Saumya, Jones, Jeff, Lomenick, Brett, Singhal, Sharad S., Guo, Linlin, Cho, Hyejin, Li, Aimin, Behal, Amita et al. · 2023 · Science Advances
4. The Pathophysiological Significance of Fibulin-3
   Imogen Livingstone, Vladimir Nikolaevich Uversky, Dominic Furniss, Akira Wiberg · 2020 · Biomolecules
5. The landscape of human mutually exclusive splicing
   Klas Hatje, Raza‐Ur Rahman, Ramon Oliveira Vidal, Dominic Simm, Björn Hammesfahr, Vikas Bansal, Ashish Rajput, Michel‐Edwar Mickael, Ting Sun, Stefan Bonn et al. · 2017 · Molecular Systems Biology
6. Identification of DNA-Methylated CpG Islands Associated With Gene Silencing in the Adult Body Tissues of the Ogye Chicken Using RNA-Seq and Reduced Representation Bisulfite Sequencing
   Won-Jun Lim, Kyoung Hyoun Kim, Jae‐Yoon Kim, Seongmun Jeong, Namshin Kim · 2019 · Frontiers in Genetics
7. MTSplice predicts effects of genetic variants on tissue-specific splicing
   Jun Cheng, Muhammed Hasan Çelik, Anshul Bharat Kundaje, Julien Gagneur · 2021 · Genome biology
8. Distinct Types of Disorder in the Human Proteome: Functional Implications for Alternative Splicing
   Recep Çolak, Taehyung P. Kim, Magali Michaut, Mark Sun, Manuel Irimia, Jeremy Bellay, Chad L. Myers, Benjamin J. Blencowe, Philip M. Kim · 2013 · PLoS Computational Biology
9. An overview of recent advances in structural bioinformatics of protein–protein interactions and a guide to their principles
   Govindarajan Sudha, Ruth Nussinov, Narayanaswamy Srinivasan · 2014 · Progress in Biophysics and Molecular Biology
10. Conserved functional antagonism of CELF and MBNL proteins controls stem cell-specific alternative splicing in planarians
    Jordi Solana, Manuel Irimia, Salah Ayoub, Marta Rodriguez Orejuela, Vera Zywitza, Marvin Jens, Javier Tapial, Debashish Ray, Quaid Morris, Timothy R. Hughes et al. · 2016 · eLife
11. tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing
    Lorena de la Fuente, Ángeles Arzalluz-Luque, Manuel Tardáguila, Héctor del Risco, Cristina Martí, Sonia Tarazona, Pedro Salguero, Raymond Scott, Alberto Lerma-Aguilera, Ana Alastrue‐Agudo et al. · 2020 · Genome biology
12. Signaling Pathways Driving Aberrant Splicing in Cancer Cells
    Vânia Gonçalves, Joana Pereira, Peter Jordan · 2017 · Genes
13. A survey of software for genome-wide discovery of differential splicing in RNA-Seq data
    Joan E. Hooper · 2014 · Human Genomics
14. RNA Binding Protein Ptbp2 Is Essential for Male Germ Cell Development
    Leah L. Zagore, Sarah E. Grabinski, Thomas J. Sweet, Molly M. Hannigan, R. Michael Sramkoski, Qin Li, Donny D. Licatalosi · 2015 · Molecular and Cellular Biology
15. The Role of RNA Splicing Factors in Cancer: Regulation of Viral and Human Gene Expression in Human Papillomavirus-Related Cervical Cancer
    Andrea Cerasuolo, Luigi Buonaguro, Luigi Buonaguro, Maria Lina Tornesello · 2020 · Frontiers in Cell and Developmental Biology
16. Identification of protein features encoded by alternative exons using Exon Ontology
    Léon-Charles Tranchevent, Fabien Aubé, Louis Dulaurier, Clara Benoit‐Pilven, Amandine Rey, Arnaud Poret, Émilie Chautard, Hussein Mortada, François-Olivier Desmet, Fatima Zahra Chakrama et al. · 2017 · Genome Research
17. The function of alternative splicing in the proteome: rewiring protein interactomes to put old functions into new contexts
    Peter Kjer-Hansen, Robert J. Weatheritt · 2023 · Nature Structural & Molecular Biology
18. Evolutionary Constraint and Disease Associations of Post-Translational Modification Sites in Human Genomes
    Jüri Reimand, Omar Wagih, Gary D. Bader · 2015 · PLoS Genetics
19. Conserved Sequence Preferences Contribute to Substrate Recognition by the Proteasome
    Houqing Yu, Amit Kumar Singh Gautam, Shameika R. Wilmington, Dennis Wylie, Kirby Martinez‐Fonts, Grace Kago, Marie Warburton, Sreenivas Chavali, Tomonao Inobe, Ilya J. Finkelstein et al. · 2016 · Journal of Biological Chemistry
20. Uncovering the impacts of alternative splicing on the proteome with current omics techniques
    Marina Reixachs‐Solé, Eduardo Eyras · 2022 · Wiley Interdisciplinary Reviews - RNA
21. Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad
    Toby J. Gibson, Holger Dinkel, Kim Van Roey, Francesca Diella · 2015 · Cell Communication and Signaling
22. Intrinsic disorder in proteins involved in amyotrophic lateral sclerosis
    Nikolas Santamaria, Marwa Alhothali, Maria Belen Harreguy Alfonso, Leonid Breydo, Vladimir Nikolaevich Uversky · 2016 · Cellular and Molecular Life Sciences
23. Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins
    Wenguang Shao, Tiannan Guo, Nora C. Toussaint, Peng Xue, Ulrich Wagner, Li Li, Konstantina Charmpi, Yi Zhu, Jianmin Wu, Marija Buljan et al. · 2019 · Nature Communications
24. Computational Prediction of Short Linear Motifs from Protein Sequences
    Richard J. Edwards, Nicolás Palópoli · 2014 · Methods in molecular biology
25. High-resolution functional annotation of human transcriptome: predicting isoform functions by a novel multiple instance-based label propagation method
    Wenyuan Li, Shuli Kang, Chun-Chi Liu, Shihua Zhang, Yi Shi, Yan Liu, Xianghong Jasmine Zhou · 2013 · Nucleic Acids Research
26. Evolution at protein ends: major contribution of alternative transcription initiation and termination to the transcriptome and proteome diversity in mammals
    Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Nikolay A. Spiridonov, Eugene V. Koonin · 2014 · Nucleic Acids Research
27. Intrinsically disordered proteins and conformational noise
    Gita Mahmoudabadi, Krithika Rajagopalan, Robert H. Getzenberg, Sridhar S. Hannenhalli, Govindan Rangarajan, Prakash Kulkarni · 2012 · Cell Cycle
28. Revealing the Determinants of Widespread Alternative Splicing Perturbation in Cancer
    Yongsheng Li, Nidhi Sahni, Rita Pancsa, Daniel James McGrail, Juan Xu, Hua Xu, Jasmin Coulombe‐Huntington, Michaël Ryan, Boranai Tychhon, Dhanistha Sudhakar et al. · 2017 · Cell Reports
29. Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome
    Marina Reixachs‐Solé, Jorge Ruiz‐Orera, M. Mar Albà, Eduardo Eyras · 2020 · Nature Communications
30. Towards Decoding the Sequence-Based Grammar Governing the Functions of Intrinsically Disordered Protein Regions
    Shasha Chong, Mustafa Mir · 2020 · Journal of Molecular Biology
31. Neuronal activity-regulated alternative mRNA splicing
    Guido Hermey, Nils Blüthgen, Dietmar Kuhl · 2017 · The International Journal of Biochemistry & Cell Biology
32. FuzDB: a new phase in understanding fuzzy interactions
    András Hatos, Alexander Miguel Monzón, Silvio C. E. Tosatto, Damiano Piovesan, Mónika Fuxreiter · 2021 · Nucleic Acids Research
33. Assessing the functional relevance of splice isoforms
    Fernando Campo del Pozo, Laura Martínez Gómez, Thomas Walsh, José Manuel Rodrı́guez, Tomás Di Domenico, Federico Abascal, Jesús Vázquez, Michael L. Tress · 2021 · NAR Genomics and Bioinformatics
34. The contribution of intrinsic disorder prediction to the elucidation of protein function
    Domenico Cozzetto, David T. Jones · 2013 · Current Opinion in Structural Biology
35. The PTEN Long N-tail is intrinsically disordered: increased viability for PTEN therapy
    Prerna Malaney, Vladimir Nikolaevich Uversky, Vrushank Davé · 2013 · Molecular BioSystems
36. How do disordered regions achieve comparable functions to structured domains?
    Natasha S. Latysheva, Tilman Flock, Robert J. Weatheritt, Sreenivas Chavali, M. Madan Babu · 2015 · Protein Science
37. Computational Identification of MoRFs in Protein Sequences Using Hierarchical Application of Bayes Rule
    Nawar Malhis, Eric T. C. Wong, Roy Nassar, Jörg A. Gsponer · 2015 · PLoS ONE
38. Protein diversification through post-translational modifications, alternative splicing, and gene duplication
    Yonathan Goldtzvik, Neeladri Sen, Su Datt Lam, Christine Anne Orengo · 2023 · Current Opinion in Structural Biology
39. Structural Disorder Provides Increased Adaptability for Vesicle Trafficking Pathways
    Natalia Pietrosemoli, Rita Pancsa, Péter Tompa · 2013 · PLoS Computational Biology
40. Roles of RNA-binding Proteins and Post-transcriptional Regulation in Driving Male Germ Cell Development in the Mouse
    Donny D. Licatalosi · 2016 · Advances in experimental medicine and biology
41. Identification of RBPMS as a mammalian smooth muscle master splicing regulator via proximity of its gene with super-enhancers
    Erick E Nakagaki-Silva, Clare Gooding, Miriam Llorian, Aishwarya G. Jacob, Frederick Richards, Adrian Buckroyd, Sanjay Sinha, Christopher W. J. Smith · 2019 · eLife
42. Tools to Covisualize and Coanalyze Proteomic Data with Genomes and Transcriptomes: Validation of Genes and Alternative mRNA Splicing
    Chi Nam Ignatius Pang, Aidan P. Tay, Carlos Aya, Natalie A. Twine, Linda Harkness, Gene Hart‐Smith, Samantha Z. Chia, Zhiliang Chen, Nandan Deshpande, Nadeem Omar Kaakoush et al. · 2013 · Journal of Proteome Research
43. Alternative Splicing of Four Trafficking Genes Regulates Myofiber Structure and Skeletal Muscle Physiology
    Jimena Giudice, James Anthony Loehr, George Gerald Rodney, Thomas A. Cooper · 2016 · Cell Reports
44. The impact of splicing on protein domain architecture
    Sara Light, Arne Elofsson · 2013 · Current Opinion in Structural Biology
45. Domain-based prediction of the human isoform interactome provides insights into the functional impact of alternative splicing
    Ghadie, Mohamed Ali, Lambourne, Luke, Vidal, Marc, Xia, Yu · 2017 · PLOS Computational Biology
46. Protein intrinsic disorder and network connectivity. The case of 14-3-3 proteins
    Marina Uhart, Diego M. Bustos · 2014 · Frontiers in Genetics
47. Pathogenic impact of transcript isoform switching in 1,209 cancer samples covering 27 cancer types using an isoform-specific interaction network
    Abdullah Kahraman, Tülay Karakulak, Damian Szklarczyk, Christian von Mering · 2020 · Scientific Reports
48. Liver RBFOX2 regulates cholesterol homeostasis via Scarb1 alternative splicing in mice
    Helen A.B. Paterson, Sijia Yu, Natalia Artigas, Miguel A. Prado, Nejc Haberman, Yi-Fang Wang, Andrew M Jobbins, Eleni Pahita, João Benhur Mokochinski, Zoe Hall et al. · 2022 · Nature Metabolism
49. Cryo-EM structure of hnRNPDL-2 fibrils, a functional amyloid associated with limb-girdle muscular dystrophy D3
    Javier García‐Pardo, Andrea Bartolomé-Nafría, Antonio Chaves-Sanjuán, Marcos Gil-García, Cristina Visentin, Martino Bolognesi, Stéfano Ricagno, Salvador Ventura · 2023 · Nature Communications
50. Taxonomic Landscape of the Dark Proteomes: Whole‐Proteome Scale Interplay Between Structural Darkness, Intrinsic Disorder, and Crystallization Propensity
    Gang Hu, Kui Wang, Jiangning Song, Vladimir Nikolaevich Uversky, Lukasz Kurgan · 2018 · PROTEOMICS
51. Computational prediction of functions of intrinsically disordered regions
    Akila Katuwawala, Sina Ghadermarzi, Lukasz Kurgan · 2019 · Progress in molecular biology and translational science
52. Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases
    Zakaria Louadi, Maria L. Elkjaer, Melissa Klug, Chit Tong Lio, Amit M. Fenn, Zsolt Illés, Dario Bongiovanni, Jan Baumbach, Tim Kacprowski, Markus List et al. · 2021 · Genome biology
53. In heart failure reactivation of RNA-binding proteins is associated with the expression of 1,523 fetal-specific isoforms
    Matteo D’Antonio, Jennifer Nguyen, Timothy D. Arthur, Hiroko Matsui, Margaret K. R. Donovan, Agnieszka D’Antonio‐Chronowska, Kelly A. Frazer · 2022 · PLoS Computational Biology
54. Identifying common transcriptome signatures of cancer by interpreting deep learning models
    Jha, Anupama, Quesnel-Vallières, Mathieu, Wang, David, Thomas-Tikhonenko, Andrei, Lynch, Kristen W, Barash, Yoseph · 2022 · Genome Biology
55. ChiPPI: a novel method for mapping chimeric protein–protein interactions uncovers selection principles of protein fusion events in cancer
    Milana Frenkel‐Morgenstern, Alessandro Gorohovski, Somnath Tagore, Vaishnovi Sekar, Miguél Vázquez, Alfonso Valencia · 2017 · Nucleic Acids Research
56. Muscle-Specific Mis-Splicing and Heart Disease Exemplified by RBM20
    Maimaiti Rexiati, Mingming Sun, Wei Guo · 2018 · Genes
57. Zooming into the Dark Side of Human Annexin-S100 Complexes: Dynamic Alliance of Flexible Partners
    Judith Weisz, Vladimir Nikolaevich Uversky · 2020 · International Journal of Molecular Sciences
58. ESRP1-regulated isoform switching of LRRFIP2 determines metastasis of gastric cancer
    Ji Hee Lee, Kyoungwha Pang, Junil Kim, Eunji Hong, Jeeyun Lee, Hee Jin Cho, Jinah Park, Min‐Jung Son, Sihyun Park, Minjung Lee et al. · 2022 · Nature Communications
59. Cancer/Testis Antigens: “Smart” Biomarkers for Diagnosis and Prognosis of Prostate and Other Cancers
    Prakash Kulkarni, Vladimir Nikolaevich Uversky · 2017 · International Journal of Molecular Sciences
60. Human Proteins with Target Sites of Multiple Post-Translational Modification Types Are More Prone to Be Involved in Disease
    Qianli Huang, Jinhui Chang, Man Kit Cheung, Wenyan Nong, Lei Li, Ming-Tsung Lee, Hoi Shan Kwan · 2014 · Journal of Proteome Research
61. Predominant contribution of cis‐regulatory divergence in the evolution of mouse alternative splicing
    Qingsong Gao, Wei Sun, Marlies Ballegeer, Claude Libert, Wei Chen · 2015 · Molecular Systems Biology
62. MIR retroposon exonization promotes evolutionary variability and generates species-specific expression of IGF-1 splice variants
    Giosuè Annibalini, Pamela Bielli, Mauro De Santi, Deborah Agostini, Michele Guescini, Davide Sisti, Serena Contarelli, Giorgio Brandi, Anna Villarini, Vilberto Stocchi et al. · 2016 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
63. The variation game: Cracking complex genetic disorders with NGS and omics data
    Hongzhu Cui, Andi Dhroso, Nathan T. Johnson, Dmitry Korkin · 2015 · Methods
64. Ensemble allosteric model: energetic frustration within the intrinsically disordered glucocorticoid receptor
    Jordan T. White, Jing Li, Emily M. Grasso, James O. Wrabl, Vincent J. Hilser · 2018 · Philosophical Transactions of the Royal Society B Biological Sciences
65. Re-evaluating the impact of alternative RNA splicing on proteomic diversity
    Jeru Manoj Manuel, Noé Guilloy, Inès Khatir, Xavier Roucou, Benoît Laurent · 2023 · Frontiers in Genetics
66. Protein Abundance Biases the Amino Acid Composition of Disordered Regions to Minimize Non-functional Interactions
    Benjamin Dubreuil, Or Matalon, Emmanuel D. Levy · 2019 · Journal of Molecular Biology
67. How alternative splicing affects membrane-trafficking dynamics
    R. Eric Blue, Ennessa G. Curry, Nichlas M. Engels, Eunice Y. Lee, Jimena Giudice · 2018 · Journal of Cell Science
68. Role of duplicate genes in determining the tissue-selectivity of hereditary diseases
    Ruth Barshir, Idan Hekselman, Netta Shemesh, Moran Sharon, Lena Novack, Esti Yeger‐Lotem · 2018 · PLoS Genetics
69. Alternative splicing is a Sorghum bicolor defense response to fungal infection
    Lanxiang Wang, Mo‐Xian Chen, Fu‐Yuan Zhu, Tao T. Fan, Jianhua Zhang, Clive Lo · 2019 · Planta
70. Bridging the splicing gap in human genetics with long-read RNA sequencing: finding the protein isoform drivers of disease
    Peter J. Castaldi, Abdullah Abood, Charles R. Farber, Gloria Sheynkman · 2022 · Human Molecular Genetics
71. CLUMSY VEIN , the Arabidopsis DEAH ‐box Prp16 ortholog, is required for auxin‐mediated development
    Ryuji Tsugeki, Nana Tanaka‐Sato, Nozomi Maruyama, Shiho Terada, Mikiko Kojima, Hitoshi Sakakibara, Kiyotaka Okada · 2014 · The Plant Journal
72. Esrp1-Regulated Splicing of Arhgef11 Isoforms Is Required for Epithelial Tight Junction Integrity
    Sungkyoung Lee, Benjamin Walter Cieply, Yueqin Yang, Natoya J. Peart, Carl Glaser, Patricia Chan, Russ P. Carstens · 2018 · Cell Reports
73. Alternative splicing in prostate cancer progression and therapeutic resistance
    Chitra Rawat, Hannelore V. Heemers · 2024 · Oncogene
74. Intrinsically Disordered Regions in Serum Albumin: What Are They For?
    Литус Екатерина Андреевна, Sergei E. Permyakov, Vladimir Nikolaevich Uversky, Eugene A. Permyakov · 2017 · Cell Biochemistry and Biophysics
75. Orchestration of signaling by structural disorder in class 1 cytokine receptors
    Pernille Seiffert, Katrine Bugge, Mads Mørup Nygaard, Gitte W. Haxholm, Jacob H. Martinsen, Martin Nors Pedersen, Lise Arleth, Wouter Boomsma, Birthe Brandt Kragelund · 2020 · Cell Communication and Signaling
76. Systems-wide Identification of cis-Regulatory Elements in Proteins
    Ju Hun Yeon, Florian Heinkel, Minhui Sung, Dokyun Na, Jörg A. Gsponer · 2016 · Cell Systems
77. Pathway perturbations in signaling networks: Linking genotype to phenotype
    Yongsheng Li, Daniel James McGrail, Natasha S. Latysheva, S. Stephen Yi, M. Madan Babu, Nidhi Sahni · 2018 · Seminars in Cell and Developmental Biology
78. Intrinsic Disorder in Tetratricopeptide Repeat Proteins
    Nathan W Van Bibber, Cornelia Haerle, Roy Khalife, Bin Xue, Vladimir Nikolaevich Uversky · 2020 · International Journal of Molecular Sciences
79. Global regulatory features of alternative splicing across tissues and within the nervous system of C. elegans
    Bina Koterniak, Pallavi P. Pilaka, Xicotencatl Gracida, Lisa-Marie Schneider, Iva Pritišanac, Yun Zhang, John A. Calarco · 2020 · Genome Research
80. Evolutionary analyses of intrinsically disordered regions reveal widespread signals of conservation
    Marc D. Singleton, Michael B. Eisen · 2024 · PLoS Computational Biology
81. Transcriptional divergence plays a role in the rewiring of protein interaction networks after gene duplication
    Isabelle Gagnon‐Arsenault, François-Christophe Marois-Blanchet, Samuel Rochette, Guillaume Diss, Alexandre K. Dubé, Christian R. Landry · 2012 · Journal of Proteomics
82. Expansion of DUB functionality generated by alternative isoforms – USP35, a case study
    Paweł Leźnicki, Jayaprakash Natarajan, Gerd Bader, Walter Spevak, Andreas Schlattl, S.A. Abdul Rehman, Deepika Pathak, Simone Weidlich, Andreas Zoephel, Marie C. Bordone et al. · 2018 · Journal of Cell Science
83. Quantifying transcriptome diversity: a review
    Emma F. Jones, Anisha Haldar, Vishal H. Oza, Brittany N. Lasseigne · 2023 · Briefings in Functional Genomics
84. Coding Regions of Intrinsic Disorder Accommodate Parallel Functions
    Rita Pancsa, Péter Tompa · 2016 · Trends in Biochemical Sciences
85. Biological impact of mutually exclusive exon switching
    Su Datt Lam, M. Madan Babu, Jonathan Gill Lees, Christine Anne Orengo · 2021 · PLoS Computational Biology
86. Systematic exploration of dynamic splicing networks reveals conserved multistage regulators of neurogenesis
    Hong Ryul Han, Andrew J. Best, Ulrich Braunschweig, Nicholas Mikolajewicz, Jack Daiyang Li, Jonathan F. Roth, Fuad Chowdhury, Federica Mantica, Syed Nabeel‐Shah, Guillermo E. Parada et al. · 2022 · Molecular Cell
87. Systematic analysis of alternative exon-dependent interactome remodeling reveals multitasking functions of gene regulatory factors
    Jonathan F. Roth, Ulrich Braunschweig, Mingkun Wu, Jack Daiyang Li, Zhen‐Yuan Lin, Brett G. Larsen, Robert J. Weatheritt, Anne‐Claude Gingras, Benjamin J. Blencowe · 2023 · Molecular Cell
88. Erythropoietin and co.: intrinsic structure and functional disorder
    Vladimir Nikolaevich Uversky, Elrashdy M Moustafa Mohamed Redwan · 2016 · Molecular BioSystems
89. The intrinsically disordered E-domains regulate the IGF-1 prohormones stability, subcellular localisation and secretion
    Giosuè Annibalini, Serena Contarelli, Mauro De Santi, Roberta Saltarelli, Laura Di Patria, Michele Guescini, Anna Villarini, Giorgio Brandi, Vilberto Stocchi, Elena Barbieri · 2018 · Scientific Reports
90. Towards a Stochastic Paradigm: From Fuzzy Ensembles to Cellular Functions
    Mónika Fuxreiter · 2018 · Molecules
91. Genome annotation with long RNA reads reveals new patterns of gene expression and improves single-cell analyses in an ant brain
    Emily J. Shields, Masato Sorida, Lihong Sheng, Bogdan Sieriebriennikov, Long Ding, Roberto Bonasio · 2021 · BMC Biology
92. PPIXpress: construction of condition-specific protein interaction networks based on transcript expression
    Thorsten Will, Volkhard Helms · 2015 · Bioinformatics
93. Neuronal-specific microexon splicing of TAF1 mRNA is directly regulated by SRRM4/nSR100
    Simona Capponi, Nadja Stöffler, Manuel Irimia, Frederik M. A. van Schaik, Mercedes M. Ondik, Martin Lothar Biniossek, Lisa Lehmann, Julia Mitschke, Marit Willemijn Vermunt, Menno P. Creyghton et al. · 2019 · RNA Biology
94. Functions of short lifetime biological structures at large: the case of intrinsically disordered proteins
    Vladimir Nikolaevich Uversky · 2018 · Briefings in Functional Genomics
95. Extramembranous Regions in G Protein-Coupled Receptors: Cinderella in Receptor Biology?
    Sreetama Pal, Amitabha Chattopadhyay · 2019 · The Journal of Membrane Biology
96. Proteoform medicine: characterizing and targeting protein forms in human disease
    Jennifer A. Korchak, S. Stephen Yi, Neil L. Kelleher, Nidhi Sahni, Gloria Sheynkman · 2026 · Nature Reviews Genetics
97. Computational analysis of translational readthrough proteins in Drosophila and yeast reveals parallels to alternative splicing
    Rita Pancsa, Mauricio Macossay-Castillo, Simone Kosol, Péter Tompa · 2016 · Scientific Reports
98. Genome-scale exon perturbation screens uncover exons critical for cell fitness
    Mei‐Sheng Xiao, Arun Prasath Damodaran, Bandana Kumari, Ethan Dickson, Kun Xing, Tyler A. On, Nikhil Parab, Helen E. King, Alexendar R. Perez, Wilfried M. Guiblet et al. · 2024 · Molecular Cell
99. The Evolution of Human Cells in Terms of Protein Innovation
    Adam J. Sardar, Matt E. Oates, Hai Fang, Alistair R. R. Forrest, Hideya Kawaji, Julian Gough, Owen J. L. Rackham · 2014 · Molecular Biology and Evolution
100. Prostate-associated gene 4 (PAGE4), an intrinsically disordered cancer/testis antigen, is a novel therapeutic target for prostate cancer
     Prakash Kulkarni, John P. Orban, A. Keith Dunker, Keith Weninger · 2016 · Asian Journal of Andrology