Tissue-Specific Splicing of Disordered Segments that Embed Binding Motifs Rewires Protein Interaction Networks

Buljan, Marija, Chalancon, Guilhem, Eustermann, Sebastian, Wagner, Gunter P., Fuxreiter, Monika, Bateman, Alex, Babu, M. Madan·2012·Molecular Cell

Cited by (397)

Items 201–300 of 397

  1. Regulated splicing of large exons is linked to phase‐separation of vertebrate transcription factors
    Toshihiko Kawachi, Akio Masuda, Yoshihiro Yamashita, Jun‐ichi Takeda, Bisei Ohkawara, Mikako Ito, Kinji Ohno · 2021 · The EMBO Journal
  2. Activation-induced Tumor Necrosis Factor Receptor-associated Factor 3 (Traf3) Alternative Splicing Controls the Noncanonical Nuclear Factor κB Pathway and Chemokine Expression in Human T Cells
    Monika Michel, Ilka Wilhelmi, Astrid-Solveig Schultz, Marco Preußner, Florian Heyd · 2014 · Journal of Biological Chemistry
  3. Compartment Proteomics Analysis of White Perch (Morone americana) Ovary Using Support Vector Machines
    Justin Schilling, Angelito I. Nepomuceno, Jennifer E. Schaff, David C. Muddiman, Harry V. Daniels, Benjamin J. Reading · 2014 · Journal of Proteome Research
  4. Co-Evolution of Intrinsically Disordered Proteins with Folded Partners Witnessed by Evolutionary Couplings
    Rita Pancsa, Fruzsina Zsolyomi, Péter Tompa · 2018 · International Journal of Molecular Sciences
  5. Dissecting physical structure of calreticulin, an intrinsically disordered Ca2+-buffering chaperone from endoplasmic reticulum
    Anna Ritá Migliaccio, Vladimir Nikolaevich Uversky · 2017 · Journal of Biomolecular Structure and Dynamics
  6. From single splicing events to thousands: the ambiguous step forward in splicing research
    Emanuele Buratti, Marco Baralle, Francisco Ernesto Baralle · 2012 · Briefings in Functional Genomics
  7. Predominant patterns of splicing evolution on human, chimpanzee and macaque evolutionary lineages
    Jieyi Xiong, Xi Jiang, Angeliki Ditsiou, Yang Gao, Jing Sun, Elijah David Lowenstein, Shuyun Huang, Philipp Khaitovich · 2018 · Human Molecular Genetics
  8. Intrinsic Disorder in the BK Channel and Its Interactome
    Zhenling Peng, Yoshihisa Sakai, Lukasz Kurgan, Bernd H. A. Sokolowski, Vladimir Nikolaevich Uversky · 2014 · PLoS ONE
  9. The Intrinsically Disordered Regions of the Drosophila melanogaster Hox Protein Ultrabithorax Select Interacting Proteins Based on Partner Topology
    Hao‐Ching Hsiao, Kim L. Gonzalez, Daniel J. Catanese, Kristopher E. Jordy, Kathleen Shive Matthews, Sarah E. Bondos · 2014 · PLoS ONE
  10. System-wide Analysis Reveals Intrinsically Disordered Proteins Are Prone to Ubiquitylation after Misfolding Stress
    Alex H. M. Ng, Nancy N. Fang, Sophie A. Comyn, Jörg A. Gsponer, Thibault Mayor · 2013 · Molecular & Cellular Proteomics
  11. Reconstruction of composite regulator-target splicing networks from high-throughput transcriptome data
    Panagiotis Papasaikas, Arvind U.K. Rao, Peter M. Huggins, Juan Valcárcel, A. Javier Lopez · 2015 · BMC Genomics
  12. Where protein structure and cell diversity meet
    Jorge A. Holguin-Cruz, Leonard J. Foster, Jörg A. Gsponer · 2022 · Trends in Cell Biology
  13. Alternative splicing shapes transcriptome but not proteome diversity in Physcomitrella patens
    Igor A. Fesenko, Regina Khazigaleeva, Ilya V. Kirov, Andrey Kniazev, Oksana E Glushenko, Konstantin Babalyan, Georgij P. Arapidi, Tatiana Shashkova, Ivan Butenko, Victor Gavrilovich Zgoda et al. · 2017 · Scientific Reports
  14. The developmental transcriptome landscape of receptive endometrium during embryo implantation in dairy goats
    Lei Zhang, Xiaorui Liu, JunZe Liu, Li Ma, Zhan-qin Zhou, Yuxuan Song, Binyun Cao · 2017 · Gene
  15. An intrinsically disordered proteins community for ELIXIR
    Norman E. Davey, M. Madan Babu, Martin J Blackledge, Alan James Bridge, Salvador Capella-Gutiérrez, Zsuzsanna Dosztányi, Rachel Drysdale, Richard J. Edwards, Arne Elofsson, Isabella C. Felli et al. · 2019 · F1000Research
  16. Taurine Induces an Ordered but Functionally Inactive Conformation in Intrinsically Disordered Casein Proteins
    Mohd Younus Bhat, Laishram Rajendrakumar Singh, Tanveer Ali Dar · 2020 · Scientific Reports
  17. Exon-phase symmetry and intrinsic structural disorder promote modular evolution in the human genome
    Éva Schád, Lajos Kalmár, Péter Tompa · 2013 · Nucleic Acids Research
  18. At the Interface of Three Nucleic Acids: The Role of RNA-Binding Proteins and Poly(ADP-ribose) in DNA Repair
    Elizaveta E. Alemasova, Olga I. Lavrik · 2017 · Acta Naturae
  19. Functionality of intrinsic disorder in tumor necrosis factor‐α and its receptors
    Vladimir Nikolaevich Uversky, Nawal Abd El‐Baky, Esmail M. El‐Fakharany, Amira Sabry, Ehab H. Mattar, Alexey V. Uversky, Elrashdy M Moustafa Mohamed Redwan · 2017 · FEBS Journal
  20. Multi-omics approach to identifying isoform variants as therapeutic targets in cancer patients
    Timothy I. Shaw, Bi Zhao, Yuxin Li, Hong Wang, Liang Wang, Brandon J. Manley, Paul A. Stewart, Aleksandra M. Karolak · 2022 · Frontiers in Oncology
  21. Splice junctions are constrained by protein disorder
    Ben Smithers, Matt E. Oates, Julian Gough · 2015 · Nucleic Acids Research
  22. Alternative Splicing Enhances the Transcriptome Complexity of Liriodendron chinense
    Zhonghua Tu, Yufang Shen, Shaoying Wen, Yaxian Zong, Huogen Li · 2020 · Frontiers in Plant Science
  23. LARP1 isoform expression in human cancer cell lines
    Hagen Schwenzer, Mai Abdel Mouti, Pia Neubert, Josephine Morris, Joanne Stockton, Sarah Bonham, Martin Fellermeyer, James Chettle, Román Fischer, Andrew David Beggs et al. · 2020 · RNA Biology
  24. Network-based method for drug target discovery at the isoform level
    Jun Ma, Jenny Wang, Laleh Soltan Ghoraie, Xin Men, Linna Liu, Penggao Dai · 2019 · Scientific Reports
  25. Phosphorylation mediated regulation of RNA splicing in plants
    Maria Camila Rodriguez Gallo, R. Glen Uhrig · 2023 · Frontiers in Plant Science
  26. A convex optimization approach for identification of human tissue-specific interactomes
    Shahin Mohammadi, Ananth Y. Grama · 2016 · Bioinformatics
  27. Evolution of a G protein-coupled receptor response by mutations in regulatory network interactions
    Raphaël B. Di Roberto, Belinda S. W. Chang, Ala Trusina, Sergio G. Peisajovich · 2016 · Nature Communications
  28. Proteomic Validation of Transcript Isoforms, Including Those Assembled from RNA-Seq Data
    Aidan P. Tay, Chi Nam Ignatius Pang, Natalie A. Twine, Gene Hart‐Smith, Linda Harkness, Moustapha S Kassem, Marc Ronald Wilkins · 2015 · Journal of Proteome Research
  29. Integrative avenues for exploring the dynamics and evolution of protein interaction networks
    Guillaume Diss, Marie Filteau, Luca Freschi, Jean‐Baptiste Leducq, Samuel Rochette, Francisco Torres‐Quiroz, Christian R. Landry · 2013 · Current Opinion in Biotechnology
  30. Networks of mRNA Processing and Alternative Splicing Regulation in Health and Disease
    Peter Jordan, Vânia Gonçalves, Sara Fernandes, Tânia Monteiro Marques, Marcelo Henrique Neves Pereira, Margarida Gama‐Carvalho · 2019 · Advances in experimental medicine and biology
  31. Detecting Rewiring Events in Protein-Protein Interaction Networks Based on Transcriptomic Data
    Markus Hollander, Trang Do, Thorsten Will, Volkhard Helms · 2021 · Frontiers in Bioinformatics
  32. Alternatively spliced exon regulates context-dependent MEF2D higher-order assembly during myogenesis
    Mónika Gönczi, João M. C. Teixeira, Susana Barrera-Vilarmau, Laura Mediani, Francesco Antoniani, Tamás Milán Nagy, Krisztina Fehér, Zsolt Ráduly, Viktor Ambrus, József Tőzsér et al. · 2023 · Nature Communications
  33. Gene Duplication and Alternative Splicing as Evolutionary Drivers of Proteome Specialization
    Federica Mantica, Manuel Irimia · 2025 · BioEssays
  34. Tissue-specific mouse mRNA isoform networks
    Gaurav Kandoi, Julie A. Dickerson · 2019 · Scientific Reports
  35. Prediction of Disordered Regions and Their Roles in the Anti-Pathogenic and Immunomodulatory Functions of Butyrophilins
    Elrashdy M Moustafa Mohamed Redwan, Ahmed Mahmoud Al-Hejin, Hussein A. Almehdar, Abdelrahman Elsaway, Vladimir Nikolaevich Uversky · 2018 · Molecules
  36. Transient antibody-antigen interactions mediate the strain-specific recognition of a conserved malaria epitope
    Bankala Krishnarjuna, Toshihiko Sugiki, Rodrigo A. V. Morales, Jeffrey Seow, Toshimichi Fujiwara, Karyn L. Wilde, Raymond S. Norton, Christopher A. MacRaild · 2018 · Communications Biology
  37. An Atlas of Protein-Protein Interactions Across Mammalian Tissues
    Michael A. Skinnider, Nichollas E. Scott, Anna Prudova, Nikolay Stoynov, Richard Greg Stacey, Joerg Gsponer, Leonard J. Foster · 2018 · SSRN Electronic Journal
  38. Splicing in 4D
    Panagiotis Papasaikas, Juan Valcárcel · 2012 · Science
  39. Unreported intrinsic disorder in proteins: Building connections to the literature on IDPs
    Vladimir Nikolaevich Uversky · 2014 · Intrinsically Disordered Proteins
  40. Cell-type-resolved alternative splicing patterns in mouse liver
    Peng Wu, Donghu Zhou, Weiran Lin, Yanyan Li, Handong Wei, Xiaohong Qian, Ying Jiang, Fuchu He · 2017 · DNA Research
  41. Transcripts’ Evolutionary History and Structural Dynamics Give Mechanistic Insights into the Functional Diversity of the JNK Family
    Adel Ait-Hamlat, Diego Javier Zea, Antoine Labeeuw, Lélia Polit, Hugues Richard, Élodie Laine · 2020 · Journal of Molecular Biology
  42. Enhancers are genes that express organizational RNAs
    John S. Mattick · 2023 · Frontiers in RNA Research
  43. DoChaP: the domain change presenter
    Shani Talia Gal-Oz, Nimrod Haiat, Dana Eliyahu, Guy Shani, Tal Shay · 2021 · Nucleic Acids Research
  44. mRNA isoform balance in neuronal development and disease
    Geneva R. LaForce, Polyxeni Philippidou, Ashleigh E. Schaffer · 2022 · Wiley Interdisciplinary Reviews - RNA
  45. Human genes with a greater number of transcript variants tend to show biological features of housekeeping and essential genes
    Jae Yong Ryu, Hyun Uk Kim, Sang Yup Lee · 2015 · Molecular BioSystems
  46. (Intrinsically disordered) splice variants in the proteome: implications for novel drug discovery
    Vladimir Nikolaevich Uversky · 2016 · Genes & Genomics
  47. Intrinsic disorder in spondins and some of their interacting partners
    Oluwole Alowolodu, Gbemisola Johnson, Lamis Alashwal, Iqbal Addou, Irina V. Zhdanova, Vladimir Nikolaevich Uversky · 2016 · Intrinsically Disordered Proteins
  48. Regulating Divergent Transcriptomes through mRNA Splicing and Its Modulation Using Various Small Compounds
    Ken‐ichi Fujita, Takaki Ishizuka, Mizuki Mitsukawa, Masashi Kurata, Seiji Masuda · 2020 · International Journal of Molecular Sciences
  49. Disordered clock protein interactions and charge blocks turn an hourglass into a persistent circadian oscillator
    Jankowski, Meaghan S., Griffith, Daniel, Shastry, Divya G., Pelham, Jacqueline F., Ginell, Garrett M., Thomas, Joshua, Karande, Pankaj, Holehouse, Alex S., Hurley, Jennifer M. · 2024 · Nature Communications
  50. Splicing complexity as a pivotal feature of alternative exons in mammalian species
    Feiyang Zhao, Yubin Yan, Yaxi Wang, Yuan Liu, Ruolin Yang · 2023 · BMC Genomics
  51. Pushing the annotation of cellular activities to a higher resolution: Predicting functions at the isoform level
    Wenyuan Li, Chun-Chi Liu, Shuli Kang, Jianrong Li, Yu‐Ting Tseng, Xianghong Jasmine Zhou · 2015 · Methods
  52. Identification and Analysis of Micro-Exon Genes in the Rice Genome
    Qi Song, Fang Lv, Muhammad Tahir ul Qamar, Xing Feng, Run Zhou, Huan Li, Ling‐Ling Chen · 2019 · International Journal of Molecular Sciences
  53. Systematic analysis of the effects of splicing on the diversity of post-translational modifications in protein isoforms using PTM-POSE
    Crowl, Sam, Coleman, Maeve Bella, Chaphiv, Andrew, Jordan, Ben T., Naegle, Kristen M. · 2025 · Cell Systems
  54. Nodes occupying central positions in human tissue specific PPI networks are enriched with many splice variants
    Anupam Sinha, Hampapathalu Adimurthy Nagarajaram · 2014 · PROTEOMICS
  55. DeepIII: Predicting Isoform-Isoform Interactions by Deep Neural Networks and Data Fusion
    Jun Wang, Long Zhang, An Zeng, Dawen Xia, Jiantao Yu, Guoxian Yu · 2021 · IEEE Transactions on Computational Biology and Bioinformatics
  56. Identifying and characterising key alternative splicing events in Drosophila development
    Jonathan Gill Lees, Juan A. G. Ranea, Christine Anne Orengo · 2015 · BMC Genomics
  57. Intrinsically disordered proteins: administration not executive
    Mike P. Williamson, Jennifer R. Potts · 2012 · Biochemical Society Transactions
  58. Extracting reaction networks from databases—opening Pandora’s box
    Fearnley, L. G., Davis, M. J., Ragan, M. A., Nielsen, L. K. · 2014 · Briefings in Bioinformatics
  59. Toward a comprehensive profiling of alternative splicing proteoform structures, interactions and functions
    Élodie Laine, María Inés Freiberger · 2025 · Current Opinion in Structural Biology
  60. Probing Isoform Switching Events in Various Cancer Types: Lessons From Pan-Cancer Studies
    Tülay Karakulak, Holger Moch, Christian von Mering, Abdullah Kahraman · 2021 · Frontiers in Molecular Biosciences
  61. The C-Terminus of the PSMA3 Proteasome Subunit Preferentially Traps Intrinsically Disordered Proteins for Degradation
    Assaf Biran, Nadav Myers, Shirel Steinberger, Julia Adler, Marianna Riutin, Karin Broennimann, Nina Bacher Reuven, Yosef Shaul · 2022 · Cells
  62. The variable domain from dynamin‐related protein 1 promotes liquid–liquid phase separation that enhances its interaction with cardiolipin‐containing membranes
    Ammon E. Posey, Kyle A. Ross, Mehran Bagheri, Elizabeth N. Lanum, M. Adil Khan, Christine E. Jennings, Megan Cleland Harwig, Nolan W. Kennedy, Vincent J. Hilser, James L. Harden et al. · 2023 · Protein Science
  63. Mapping the Multiscale Proteomic Organization of Cellular and Disease Phenotypes
    Anthony J. Cesnik, Leah V. Schaffer, Ishan Gaur, Mayank Jain, Trey Ideker, Emma K. Lundberg · 2024 · Annual Review of Biomedical Data Science
  64. Three reasons protein disorder analysis makes more sense in the light of collagen
    Ben Smithers, Matt E. Oates, Péter Tompa, Julian Gough · 2016 · Protein Science
  65. Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare
    Thorsten Will, Volkhard Helms · 2017 · BMC Systems Biology
  66. Alternative splicing of DSP1 enhances snRNA accumulation by promoting transcription termination and recycle of the processing complex
    Weili Wang, Xuepiao Pu, Siyu Yang, Yujie Feng, Chan Lin, Mu Li, Xi Li, Huali Li, Chunmei Meng, Qingjun Xie et al. · 2020 · Proceedings of the National Academy of Sciences
  67. Are all of the human exons alternatively spliced?
    F.-C. Chen · 2013 · Briefings in Bioinformatics
  68. A subset of functional adaptation mutations alter propensity for α-helical conformation in the intrinsically disordered glucocorticoid receptor tau1core activation domain
    Evdokiya Salamanova, Joana Costeira-Paulo, Kyou‐Hoon Han, DoHyoung Kim, Lennart Nilsson, Anthony P. H. Wright · 2018 · Biochimica et Biophysica Acta (BBA) - General Subjects
  69. Alternative splicing in autism spectrum disorder: Recent insights from mechanisms to therapy
    Mixue Zheng, Nengcheng Bao, Zhechao Wang, Chao Song, Yongfeng Jin · 2025 · Asian Journal of Psychiatry
  70. Tools and tactics for studying alternative splicing
    Rui Sousa‐Luís, Maria Carmo‐Fonseca · 2026 · Nature Reviews Genetics
  71. The TFE-induced transient native-like structure of the intrinsically disordered $$\varvec\sigma_{ 4}^{ 70}$$ σ 4 70 domain of Escherichia coli RNA polymerase
    Piotr Kaczka, Maria Winiewska‐Szajewska, Igor Zhukov, Bozenna Rempoła, Krystyna Bolewska, Tomasz Łoziński, Andrzej Ejchart, Anna Poznańska, Kazimierz Lech Wierzchowski, Jarosław T. Poznański · 2014 · European Biophysics Journal
  72. Broad regulation of gene isoform expression by Wnt signaling in cancer
    Muhammad Idris, Nathan Harmston, Enrico G. Petretto, Babita Madan, David M. Virshup · 2019 · RNA
  73. CYP11B1 variants influence skeletal maturation via alternative splicing
    Olja Grgić, Matthew R. Gazzara, Alessandra Chesi, Carolina Medina‐Gómez, Diana L. Cousminer, Jonathan A. Mitchell, Vid Prijatelj, Jard de Vries, Enisa Shevroja, Shana Erin McCormack et al. · 2021 · Communications Biology
  74. Global Analysis of Alternative Splicing Difference in Peripheral Immune Organs between Tongcheng Pigs and Large White Pigs Artificially Infected with PRRSV In Vivo
    Yu Zhang, Liyao Xue, Hang Xu, Wan Liang, Qingqing Wu, Qingde Zhang, Xiang Zhou, Bang Liu · 2020 · BioMed Research International
  75. Droplet-based Single-cell Total RNA-seq Reveals Differential Non-Coding Expression and Splicing Patterns during Mouse Development
    Fredrik Salmén, Joachim De Jonghe, Tomasz S. Kamiński, Anna Alemany, Guillermo E. Parada, Joe Verity-Legg, Ayaka Yanagida, Timo N. Kohler, Nicholas Battich, Floris van den Brekel et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  76. Proteomic rewiring through transcriptomic diversity
    Darren J. Burgess · 2012 · Nature Reviews Genetics
  77. Biosurfer for systematic tracking of regulatory mechanisms leading to protein isoform diversity
    Mayank Murali, Jamie Saquing, Senbao Lu, Ziyang Gao, Emily F. Watts, Ben T. Jordan, Zachary Peters Wakefield, Ana Fiszbein, David R. Cooper, Peter J. Castaldi et al. · 2025 · Genome Research
  78. Alternative splicing in stem cells and development: research progress and emerging technologies
    Yan Jin, Xiaolin Liang, Xiangting Wang · 2025 · Cell Regeneration
  79. Proteoforms: Methods of Analysis and Clinical Prospects
    Olga I. Kiseleva, А.В. Лисица, Ekaterina Vladimirovna Poverennaya · 2018 · Molecular Biology
  80. Proteogenomics Integrating Novel Junction Peptide Identification Strategy Discovers Three Novel Protein Isoforms of Human NHSL1 and EEF1B2
    Cuitong He, Jiangtao Guo, Wenmin Tian, Catherine C. L. Wong · 2021 · Journal of Proteome Research
  81. Alternative RNA Structure-Coupled Gene Regulations in Tumorigenesis
    Feng‐Chi Chen · 2014 · International Journal of Molecular Sciences
  82. Characterisation of protein isoforms encoded by the Drosophila Glycogen Synthase Kinase 3 gene shaggy
    Dagmara Korona, Daniel J. H. Nightingale, Bertrand Fabre, Michael G. Nelson, Bettina Fischer, Glynnis Johnson, Jonathan Lees, Simon J. Hubbard, Kathryn Susan Lilley, Steven R. H. Russell · 2020 · PLoS ONE
  83. A 20S proteasome receptor for degradation of intrinsically disordered proteins
    Assaf Biran, Nadav Myers, Julia Adler, Karin Broennimann, Nina Bacher Reuven, Yosef Shaul · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  84. Extensive alternative splicing transitions during postnatal skeletal muscle development are required for calcium handling functions
    Amy E. Brinegar, Zheng Xia, James A. Loehr, Wei Li, George G. Rodney, Thomas A. Cooper · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  85. Reads meet rotamers: structural biology in the age of deep sequencing
    Anurag Sethi, Declan Clarke, Jieming Chen, Sushant Kumar, Timur R. Galeev, Lynne Regan, Mark Gerstein · 2015 · Current Opinion in Structural Biology
  86. Improved prediction of protein-protein interactions by a modified strategy using three conventional docking software in combination
    Sungwoo Choi, Seung Han Son, Min Young Kim, Insung Na, Vladimir Nikolaevich Uversky, Chul Geun Kim · 2023 · International Journal of Biological Macromolecules
  87. Structural role of exon-coded fragment of polypeptide chains in selected enzymes
    Monika Weronika Piwowar, Mateusz Banach, Leszek Konieczny, Irena Roterman · 2013 · Journal of Theoretical Biology
  88. Comprehensive Analyses of Tissue-Specific Networks with Implications to Psychiatric Diseases
    Guan Ning Lin, Roser Corominas, Hyun-Jun Nam, Jorge Urresti, Lilia M. Iakoucheva · 2017 · Methods in molecular biology
  89. VUS next in rare diseases? Deciphering genetic determinants of biomolecular condensation
    María Heredia-Torrejón, Raúl Montañez, Antonio González‐Meneses, Atilano Carcavilla, Miguel Ángel Medina, Alfonso Maria Lechuga-Sancho · 2024 · Orphanet Journal of Rare Diseases
  90. Characterization of alternative splicing during mammalian brain development reveals the extent of isoform diversity and potential effects on protein structural changes
    Leila Haj Abdullah Alieh, Beatriz Cardoso de Toledo, Anna Hadarovich, Ágnes Tóth-Petróczy, Federico Calegari · 2024 · Biology Open
  91. Structural disorder: a tool for housekeeping proteins performing tissue-specific interactions
    Sanghita Banerjee, Rajat Kumar De · 2015 · Journal of Biomolecular Structure and Dynamics
  92. Alternative splicing in Atlantic salmon head kidney and SHK-1 cell line during the Piscirickettsia salmonis infection: A comparative transcriptome survey
    Yeny Leal, Valentina Valenzuela‐Muñoz, Cristian Gallardo‐Escárate · 2023 · Fish & Shellfish Immunology
  93. The impact of genetically controlled splicing on exon inclusion and protein structure
    Jonah E. Einson, Mariia Minaeva, Faiza Rafi, Tuuli Lappalainen · 2024 · PLoS ONE
  94. The Relationship between Gene Isoform Multiplicity, Number of Exons and Protein Divergence
    Jordi Morata, Santi Béjar, David Talavera, Casandra Riera, Sergio Lois, Gemma Mas de Xaxars, Xavier de la Cruz · 2013 · PLoS ONE
  95. Alternative splicing tends to avoid partial removals of protein-protein interaction sites
    Alessio Colantoni, Valerio Bianchi, Pier Federico Gherardini, Gianpaolo Scalia Tomba, Gabriele Ausiello, Manuela Helmer‐Citterich, Fabrizio Ferrè · 2013 · BMC Genomics
  96. Development and tissue specific expression of RAPGEF1 (C3G) transcripts having exons encoding disordered segments with predicted regulatory function
    2024
  97. Phosphorus starvation-induced alternative splicing landscape of rice confirms the regulatory function of Pup1 QTL
    Ratna Prabha, Karishma Seem, Amrender Kumar, K. K. Vinod, Trilochan Mohapatra, Suresh Kumar · 2025 · BMC Plant Biology
  98. Molecular regulation of PGC-1α: from protein-protein interactions and post-translational modifications to pharmacological modulation
    William Q. Rios, Carlos M. Silva, Rita M. Ferreira, José R. B. Gomes · 2026 · Journal of Molecular Medicine
  99. Tissue Usage Preference and Intrinsically Disordered Region Remodeling of Alternative Splicing Derived Proteoforms in the Heart
    Boomathi Pandi, Stella Brenman, Alexander Black, Dominic C. M. Ng, Edward Lau, Maggie P. Y. Lam · 2024 · Journal of Proteome Research
  100. Identification of an Intrinsically Disordered Region (IDR) in Arginyltransferase 1 (ATE1)
    Cartwright, Misti, Parakra, Rinky, Oduwole, Ayomide, Zhang, Fangliang, Deredge, Daniel J., Smith, Aaron T. · 2024 · Biochemistry