Comparative Analysis of Single-Cell RNA Sequencing Methods

Ziegenhain, Christoph, Vieth, Beate, Parekh, Swati, Reinius, Björn, Guillaumet-Adkins, Amy, Smets, Martha, Leonhardt, Heinrich, Heyn, Holger +2 more·2017·Molecular Cell

DOI 10.1016/j.molcel.2017.01.023

Cited by (1,003)

Items 701–800 of 1,003

A comparison of computational methods for expression forecasting
Eric M. Kernfeld, Yunxiao Yang, Joshua S. Weinstock, Alexis J. Battle, Patrick Cahan · 2025 · Genome biology
From Omics to Applications: How Bioinformatics and Multi-Omics Approaches Are Revolutionizing Metal Bioleaching
Rosina Nkuna, Nikwando Mohlomi, Tonderayi Sylvester Matambo · 2026 · Minerals
Applying multi-omics techniques to the discovery of biomarkers for acute aortic dissection
Xin-Yu Hao, Shuai Cheng, Bo Jiang, Shi-Jie Xin · 2022 · Frontiers in Cardiovascular Medicine
Single-cell sequencing analysis of peripheral blood in patients with moyamoya disease
Qikai Tang, Wenjun Li, Jie Huang, Yuting Wu, Chenfeng Ma, Yiming Tu, Qianmiao Zhu, Jia‐Cheng Lu, Jiaheng Xie, Yu Shih Liu et al. · 2023 · Orphanet Journal of Rare Diseases
Integrating scRNA and bulk-RNA sequencing develops a cell senescence signature for analyzing tumor heterogeneity in clear cell renal cell carcinoma
Qiming Gong, Yan Jiang, Junfeng Xiong, Fahui Liu, Jikui Guan · 2023 · Frontiers in Immunology
Bacterial single-cell transcriptomics: Recent technical advances and future applications in dentistry
Ji-Hoi Moon, Dae‐Hyun Roh, Kyu Hwan Kwack, Jae‐Hyung Lee · 2023 · Japanese Dental Science Review
Unveiling the novel immune and molecular signatures of ovarian cancer: insights and innovations from single-cell sequencing
Zhongkang Li, Haihan Gu, Xiaotong Xu, Yanpeng Tian, Xianghua Huang, Yanfang Du · 2023 · Frontiers in Immunology
Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide
Guillermo Serrano, Nerea Berastegui, Aintzane Díaz-Mazkiaran, Paula García‐Olloqui, Carmen Rodriguez-Res, Sofía Huerga-Domínguez, Marina Ainciburu, Amaia Vilas‐Zornoza, Patxi San Martín‐Úriz, Paula Aguirre‐Ruiz et al. · 2024 · Nature Communications
Single-cell sequencing in diabetic retinopathy: progress and prospects
Tianshu Yang, Ningzhi Zhang, Ning Yang · 2025 · Journal of Translational Medicine
Transient power-law behaviour following induction distinguishes between competing models of stochastic gene expression
2025
Epigenetics factors in schizophrenia: future directions for etiologic and therapeutic study approaches
Haidong Yang, Wenxi Sun, Jin Li, Xiao‐Bin Zhang · 2025 · Annals of General Psychiatry
Application of single cell genomics to focal epilepsies: A call to action
Sattar Khoshkhoo, Dennis Lal, Christopher A. Walsh · 2021 · Brain Pathology
AdImpute: An Imputation Method for Single-Cell RNA-Seq Data Based on Semi-Supervised Autoencoders
Xu Li, Yin Xu, Tong Xue, Xinyu Zhang, Jin Li · 2021 · Frontiers in Genetics
Single-Cell Sequencing of Hepatocellular Carcinoma Reveals Cell Interactions and Cell Heterogeneity in the Microenvironment
Xinyao Li, Lei Wang, Liusong Wang, Zanjie Feng, Ci-Jun Peng · 2021 · International Journal of General Medicine
Identification of a CD4+ conventional T cells-related lncRNAs signature associated with hepatocellular carcinoma prognosis, therapy, and tumor microenvironment
Lin Zhu, Xiuping Zhang, Shuai Xu, Minggen Hu, Zhiming Zhao, Guodong Zhao, Zhaohui Xiao, Rong Liu · 2023 · Frontiers in Immunology
Unravelling the biological secrets of microchimerism by single-cell analysis
Anders Ståhlberg, Amin El Heliebi, Peter Sedlmayr, Thomas Kroneis · 2017 · Briefings in Functional Genomics
Single-Cell RNA Sequencing of Glioblastoma Cells
Rajeev Sen, Igor Dolgalev, Nermin Sumru Bayin, Adriana Heguy, Aristotelis Tsirigos, Dimitris G. Placantonakis · 2018 · Methods in molecular biology
Sparsity-Penalized Stacked Denoising Autoencoders for Imputing Single-Cell RNA-seq Data
Weilai Chi, Minghua Deng · 2020 · Genes
Characterization of iCell cardiomyocytes using single-cell RNA-sequencing methods
Christina Schmid, Christian T. Wohnhaas, Tobias Hildebrandt, Patrick Baum, Georg F. Rast · 2020 · Journal of Pharmacological and Toxicological Methods
Isoform cell type specificity in the mouse primary motor cortex
A. Sina Booeshaghi, Zizhen Yao, Cindy van Velthoven, Kimberly A. Smith, Bosiljka Tasic, Hongkui Zeng, Lior S. Pachter · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
Elucidating memory in the brain via single‐cell transcriptomics
Kaitlin E. Sullivan, Rennie M. Kendrick, Mark S. Cembrowski · 2020 · Journal of Neurochemistry
Resource: Scalable whole genome sequencing of 40,000 single cells identifies stochastic aneuploidies, genome replication states and clonal repertoires
Emma Laks, Hans Zahn, Daniel Lai, Andrew McPherson, Adi Steif, Jazmine Brimhall, Justina Biele, Beixi Wang, Tehmina Masud, Diljot S. Grewal et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
Intrinsic and extrinsic noise are distinguishable in a synthesis – export – degradation model of mRNA production
Gennady Gorin, Lior S. Pachter · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
Genome-wide molecular recording using Live-seq
Wanze Chen, Orane J. Guillaume-Gentil, Riccardo Dainese, Pernille Yde Rainer, Magda Zachara, Christoph G. Gäbelein, Julia A. Vorholt, Bart Deplancke · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
Consensus scHPF Identifies Cell Type-Specific Drug Responses in Glioma by Integrating Large-Scale scRNA-seq
Hanna Mendes Levitin, Wenting Zhao, Jeffrey N. Bruce, Peter Canoll, Peter A. Sims · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
Spatiotemporal Dynamics of Central Nervous System Diseases: Advancing Translational Neuropathology via Single‐Cell and Spatial Multiomics
Mingkai Xia, Quan Liu, Wenli Zhang, Jinwen Ge, Zhigang Mei · 2025 · MedComm
A guide to transcriptomic deconvolution in cancer
Yaoyi Dai, Shuai Guo, Yidan Pan, Carla Castignani, Matthew D. Montierth, Peter Van Loo, Wenyi Wang · 2025 · Nature reviews. Cancer
Application of single-cell RNA sequencing technology in liver diseases: a narrative review
Lian He, Anjing Lu, Lin Qin, Qianru Zhang, Hua Ling, Daopeng Tan, Yuqi He · 2021 · Annals of Translational Medicine
Advances in application of single-cell RNA sequencing in cardiovascular research
Yue Hu, Ying Zhang, Yutong Liu, Yan Gao, Tiantian San, Xiaoying Li, Sensen Song, Binglong Yan, Zhuo Zhao · 2022 · Frontiers in Cardiovascular Medicine
Transcriptome-Powered Pluripotent Stem Cell Differentiation for Regenerative Medicine
Derek A. Ogi, Sha Jin · 2023 · Cells
Development of a versatile LCM-Seq method for spatial transcriptomics of fluorescently tagged cholinergic neuron populations
Éva Rumpler, Balázs Göcz, Katalin Skrapits, Miklós Sárvári, Szabolcs Takács, Imre Farkas, Szilárd Póliska, Márton Papp, Norbert Solymosi, Erik Hrabovszky · 2023 · Journal of Biological Chemistry
Applications of single-cell analysis in immunotherapy for lung cancer: Current progress, new challenges and expectations
Nan Xiao, Hongyang Liu, Chenxing Zhang, Huanxiang Chen, Yang Li, Yang Li, Hongchun Liu, Junhu Wan · 2024 · Journal of Advanced Research
Novel insights into kidney disease: the scRNA-seq and spatial transcriptomics approaches: a literature review
Mingming Ma, Qiao Luo, Liangmei Chen, Fanna Liu, Lianghong Yin, Baozhang Guan · 2025 · BMC Nephrology
Single‐Cell Sequencing in Normal and Malignant Hematopoiesis
Nicola K. Wilson, Berthold Göttgens · 2018 · HemaSphere
Screen technical noise in single cell RNA sequencing data
Yu-Long Bai, Melody Baddoo, Erik K. Flemington, Hani N. Nakhoul, Yaozhong Liu · 2019 · Genomics
The Application of Single-Cell RNA Sequencing in Mammalian Meiosis Studies
Yiheng Peng, Huanyu Qiao · 2021 · Frontiers in Cell and Developmental Biology
A cell-cell atlas approach for understanding symbiotic interactions between microbes.
E. Alacid, T. Richards · 2021 · Current Opinion in Microbiology
Microphysiological stem cell models of the human heart
Ulgu Arslan, Alessia Moruzzi, Joanna Nowacka‐Woszuk, Christine L. Mummery, Dominik Eckardt, Peter Loskill, Valeria V. Orlova · 2022 · Materials Today Bio
Bulk and single-cell RNA-sequencing analyses along with abundant machine learning methods identify a novel monocyte signature in SKCM
Yuyao Liu, Haoxue Zhang, Yan Mao, Yangyang Shi, Xu Wang, Shaomin Shi, Delin Hu, Shengxiu Liu · 2023 · Frontiers in Immunology
Single-Cell RNA Sequencing of the Adult Mouse Kidney: From Molecular Cataloging of Cell Types to Disease-Associated Predictions
Nils O. Lindström, Guilherme De Sena Brandine, Andrew Ransick, Andrew P. McMahon · 2018 · American Journal of Kidney Diseases
Biological significance of RNA-seq and single-cell genomic research in woody plants
Wei Tang, Anna Y. Tang · 2019 · Journal of Forestry Research
Lessons from single cell sequencing in CNS cell specification and function
Zhen Li, William A. Tyler, Tarik F. Haydar · 2020 · Current Opinion in Genetics & Development
Application of single-cell transcriptomics to kinetoplastid research
Emma M. Briggs, Felix Warren, Keith R. Matthews, Richard McCulloch, Thomas D. Otto · 2021 · Parasitology
Single-Cell Sequencing, an Advanced Technology in Lung Cancer Research
Hao Wang, Die Meng, Haoyue Guo, Chenglong Sun, Peixin Chen, Minlin Jiang, Yi Xu, Jia Yu, Qiyu Fang, Jun Zhu et al. · 2021 · OncoTargets and Therapy
Deciphering cell-fate trajectories using spatiotemporal single-cell transcriptomic data
Zhenyi Zhang, Zihan Wang, Yuhao Sun, Jiantao Shen, Qiangwei Peng, Tiejun Li, Peijie Zhou · 2025 · npj Systems Biology and Applications
Exploring specialized metabolic pathways in medicinal plants with single-cell and spatial omics
Li Guo, Miaomiao Cai, Xinhao Liao, Guang‐Lei Ma, Xiaohui Fan · 2025 · Acta Pharmaceutica Sinica B
Scalable single-cell total RNA sequencing unifies coding and noncoding transcriptomics
Alina Isakova, Daniel Dan Liu, Ivana Cvijović, Rahul Sinha, Anna E. Eastman, Sirle Saul, Angela M. Detweiler, Norma F Neff, Shirit Einav, Irving L. Weissman et al. · 2026 · Nature Biotechnology
Single cell RNA sequencing techniques and applications in research of ovary development and related diseases
Zheng‐Hui Zhao, Xiaoyu Wang, Heide Schatten, Qing‐Yuan Sun · 2021 · Reproductive Toxicology
Single-nuclei transcriptomics enable detection of somatic variants in patient brain tissue
Sydney E. Townsend, Jesse J. Westfall, Jason B. Navarro, Daniel C. Koboldt, Elaine R. Mardis, Katherine E. Miller, Tracy A. Bedrosian · 2023 · Scientific Reports
Single-cell RNA sequencing technology in human spermatogenesis: Progresses and perspectives
Hanbo Jia, Wei Wang, Zhaowen Zhou, Zhiyi Chen, Zijun Lan, Hao Bo, Liqing Fan · 2023 · Molecular and Cellular Biochemistry
Single-cell RNA sequencing to understand host-virus interactions
Jia-Tong Chang, Libo Liu, Peigang Wang, Jing An · 2023 · Virologica Sinica
COPD basal cells are primed towards secretory to multiciliated cell imbalance driving increased resilience to environmental stressors
Mircea Gabriel Stoleriu, Meshal Ansari, Maximilian Strunz, Andrea C. Schamberger, Motaharehsadat Heydarian, Yaobo Ding, Carola Voss, J J Schneider, Michael Gerckens, Gerald Burgstaller et al. · 2024 · Thorax
Metacell-based differential expression analysis identifies cell type specific temporal gene response programs in COVID-19 patient PBMCs
Kevin O’Leary, Deyou Zheng · 2024 · npj Systems Biology and Applications
New genetic insights into immunotherapy outcomes in gastric cancer via single-cell RNA sequencing and random forest model
Dajun Yu, Jie Yang, BinBin Wang, Zhixiang Li, Kai Wang, Jing Li, Chao Zhu · 2024 · Cancer Immunology Immunotherapy
Single-nucleus analysis reveals microenvironment-specific neuron and glial cell enrichment in Alzheimer’s disease
Jie-Qiong Xie, Yating Lan, C. Zou, Jingfeng He, Qi Huang, Jingyi Zeng, Mika Pan, Yujia Mei, Jie-Feng Luo, D. Zou · 2024 · BMC Genomics
Advances in Single‐Cell Sequencing for Infectious Diseases: Progress and Perspectives
Mengyuan Lyu, Yang Liu, Jian Feng Zhou, Hongli Lai, Hongxia Ruan, Dongsheng Wu, Zhu Shun, Xudong Zhou, Wananqi Ma, Yuchen Huang et al. · 2025 · Advanced Science
Evaluating the practical aspects and performance of commercial single-cell RNA sequencing technologies
Anna Elz, Derrik Gratz, Annalyssa Long, David Sowerby, Azi Hadadianpour, Evan William Newell · 2025 · NAR Genomics and Bioinformatics
Studying Cancer Heterogeneity by Single-Cell RNA Sequencing
Johannes Bagnoli, Lucas Esteban Wange, Aleksandar Janjic, Wolfgang Enard · 2019 · Methods in molecular biology
Looking at the developing lung in single-cell resolution
Ivana Mižíková, Bernard Thébaud · 2020 · American Journal of Physiology-Lung Cellular and Molecular Physiology
Optimization of library preparation based on SMART for ultralow RNA-seq in mice brain tissues
Erteng Jia, Huajuan Shi, Ying Wang, Ying Zhou, Zhiyu Liu, Min Pan, Yunfei Bai, Xiangwei Zhao, Qinyu Ge · 2021 · BMC Genomics
Improved downstream functional analysis of single-cell RNA-sequence data using DGAN
Diksha Pandey, Onkara Perumal · 2023 · Scientific Reports
Immune cell type ‘fingerprints’ at the basis of outcome diversity of human infection
Shelly Hen‐Avivi, Roi Avraham · 2017 · Current Opinion in Microbiology
Using single cell analysis for translational studies in immune mediated diseases: Opportunities and challenges
Siddhartha M. Sharma, Louis Gioia, Brian T. Abe, Marie Holt, Anne E. Costanzo, Lisa Kain, Andrew I. Su, Luc Teyton · 2018 · Molecular Immunology
Evolving Clinical Applications of Tissue Transcriptomics in Kidney Disease
Andrea L. Oliverio, Tiffany R. Bellomo, Laura H. Mariani · 2019 · Frontiers in Pediatrics
Contribution of Single-Cell Transcriptomics to the Characterization of Human Spermatogonial Stem Cells: Toward an Application in Male Fertility Regenerative Medicine?
Anne‐Sophie Gille, Clémentine Lapoujade, Jean‐Philippe Wolf, Pierre Fouchet, Virginie Barraud‐Lange · 2019 · International Journal of Molecular Sciences
Single-Cell Transcriptional Profiling of the Intestinal Epithelium
Claudia Capdevila, Ruben I. Calderon, Erin C. Bush, Kismet Sheldon-Collins, Peter A. Sims, Kelley S. Yan · 2020 · Methods in molecular biology
Single Cell Sequencing in Cancer Diagnostics
Frederik Otzen Bagger, Victoria Probst · 2020 · Advances in experimental medicine and biology
Single-cell transcriptomics uncover distinct innate and adaptive cell subsets during tissue homeostasis and regeneration
Yi Yang, Manching Ku, Kathy O. Lui · 2020 · Journal of Leukocyte Biology
Single-Cell RNA Sequencing Reveals that the Switching of the Transcriptional Profiles of Cysteine-Related Genes Alters the Virulence of Entamoeba histolytica
Meng Feng, Yuhan Zhang, Hang Zhou, Xia Li, Yongfeng Fu, Hiroshi Tachibana, Xunjia Cheng · 2020 · mSystems
Resolving Transcriptional States and Predicting Lineages in the Annelid Capitella teleta Using Single-Cell RNAseq
Abhinav Sur, Néva P. Meyer · 2021 · Frontiers in Ecology and Evolution
TAMEP are brain tumor parenchymal cells controlling neoplastic angiogenesis and progression
Roland E. Kälin, Linzhi Cai, Yuping Li, Dongxu Zhao, Huabin Zhang, Jiying Cheng, Wenlong Zhang, Yingxi Wu, Katharina Eisenhut, Philipp Janssen et al. · 2021 · Cell Systems
SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data
Imad Abugessaisa, Akira Hasegawa, Shuhei Noguchi, Mélissa Cardon, Kazuhide Watanabe, Masataka Takahashi, Harukazu Suzuki, Shintaro Katayama, Juha Kere, Takeya Kasukawa · 2022 · iScience
XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples
Arif O. Harmanci, Akdes Serin Harmancı, Tiemo Jürgen Klisch, Akash J. Patel · 2022 · BMC Genomics
Signals trigger state-specific transcriptional programs to support diversity and homeostasis in immune cells
Cornelius Fischer, Maria Metsger, Sophia Bauch, Ramon Oliveira Vidal, Michael E. Böttcher, Phillip Grote, Magdalena Kliem, Sascha Sauer · 2019 · Science Signaling
FASTGenomics: An analytical ecosystem for single-cell RNA sequencing data
Claus Jürgen Scholz, Paweł Biernat, Matthias Becker, Kevin E. Bassler, Patrick S. Günther, Jenny Balfer, Henning Dickten, Lars Flöer, Kathrin Heikamp, Philipp Angerer et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
matchSCore: Matching Single-Cell Phenotypes Across Tools and Experiments
Elisabetta Mereu, Giovanni Lo Iacono, Amy Guillaumet-Adkins, Cátia Moutinho, Giulia Lunazzi, Catarina P. Santos, Irene Miguel-Escalada, Jorge P. Ferrer, Francisco X. Real, Ivo Glynne Gut et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
starmap: Immersive visualisation of single cell data using smartphone-enabled virtual reality
Andrian Yang, Yu Yao, Jianfu Li, Joshua W. K. Ho · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
Transcriptome Informatics
Liang Chen, Garry Wong · 2017 · Elsevier eBooks
CloneSeq: A highly sensitive analysis platform for the characterization of 3D-cultured single-cell-derived clones
Danny Bavli, Xue Sun, Chen Kozulin, Dena Ennis, Alex Motzik, Alva Biran, Shlomi Brielle, Adi Alajem, Eran Meshorer, Amnon Buxboim et al. · 2021 · Developmental Cell
Single-cell Technologies Provide Novel Insights into Liver Physiology and Pathology
Guanzi Chen, Wenli Xu, Zhicong Long, Yutian Chong, Bingliang Lin, Yusheng Jie · 2023 · Journal of Clinical and Translational Hepatology
scGIR: deciphering cellular heterogeneity via gene ranking in single-cell weighted gene correlation networks
Fei Xu, Huan Hu, Hai Lin, Jun Lu, Feng Cheng, Jiqian Zhang, Xiang Li, Jianwei Shuai · 2024 · Briefings in Bioinformatics
Multiple transcriptome analyses reveal mouse testis developmental dynamics
Anqi Chen, Chaoneng Ji, Chengtao Li, Beate Brand‐Saberi, Suhua Zhang · 2024 · BMC Genomics
Integration of single-cell sequencing and bulk RNA-seq to identify and develop a prognostic signature related to colorectal cancer stem cells
Jiale Wu, Wanyu Li, Junyu Su, Jiamin Zheng, Yanwen Liang, Jiansuo Lin, Bilian Xu, Yi Liu · 2024 · Scientific Reports
Systematic evaluation with practical guidelines for single-cell and spatially resolved transcriptomics data simulation under multiple scenarios
Hongrui Duo, Yinghong Li, Lan Yang, Jingxin Tao, Qingxia Yang, Yingxue Xiao, Jing Sun, Lei Li, Xiner Nie, Xiaoxi Zhang et al. · 2024 · Genome biology
From whole bodies to single cells: A guide to transcriptomic approaches for ecology and evolutionary biology
Katja M. Hoedjes, Sonja Grath, Nico Posnien, Michael Gordon Ritchie, Christian Schlötterer, Jessica K. Abbott, Isabel Almudí, Marta Coronado‐Zamora, Esra Durmaz Mitchell, Thomas Flatt et al. · 2024 · Molecular Ecology
FIND-seq: high-throughput nucleic acid cytometry for rare single-cell transcriptomics
Seung Won Shin, Prakriti Mudvari, Shravan Thaploo, Michael A. Wheeler, Daniel C. Douek, Francisco Javier Quintana, Eli Boritz, Adam R. Abate, Iain C. Clark · 2024 · Nature Protocols
Single-cell transcriptome landscape of the kidney reveals potential innate immune regulation mechanisms in hybrid yellow catfish after Aeromonas hydrophila infection
Shengtao Guo, Mengsha Zeng, Zhongyi Wang, Chenhao Zhang, Yuxin Fan, Miling Ran, Qiong Shi, Zhaobin Song · 2024 · Fish & Shellfish Immunology
Synergistic potential of stem cells and microfluidics in regenerative medicine
Resmi Rajalekshmi, Devendra K. Agrawal · 2024 · Molecular and Cellular Biochemistry
The advance of single cell transcriptome to study kidney immune cells in diabetic kidney disease
Mengjia Wang, Fang Yao, Ning Chen, Ting Wu, Jiaxin Yan, Lei Du, Shijie Zeng, Chunyang Du · 2024 · BMC Nephrology
Single-cell sequencing of full-length transcripts and T-cell receptors with automated high-throughput Smart-seq3
Hsiu-Chun Chuang, Ruidong Li, Huang Huang, Szu-Wen Liu, Christine Wan, Subhra Chaudhuri, Lili Yue, Terence C. Wong, Venina Marcela Dominical, Randy Yen et al. · 2024 · BMC Genomics
Analyze the Diversity and Function of Immune Cells in the Tumor Microenvironment From the Perspective of Single‐Cell RNA Sequencing
Lujuan Ma, Yu Luan, Lin Lü · 2025 · Cancer Medicine
Identification of Cell Subpopulations and Interactive Signaling Pathways From a Single-Cell RNA Sequencing Dataset in Osteosarcoma: A Comprehensive Bioinformatics Analysis
Rong Wu, Xiaojie Dou, Haidong Li, Zhenguo Sun, Heng Li, Yuxin Shen, Wei Weng, Jikang Min · 2022 · Frontiers in Oncology
Oncogenic signaling pathways in pancreatic ductal adenocarcinoma
Rahul Agrawal, Kedar Nath Natarajan · 2023 · Advances in cancer research
Inferring cell diversity in single cell data using consortium-scale epigenetic data as a biological anchor for cell identity
Yuliangzi Sun, Woo Jun Shim, Sophie Shen, Enakshi Sinniah, Duy Pham, Zezhuo Su, Dalia Mizikovsky, Melanie D. White, Joshua W. K. Ho, Quan Hoang Nguyen et al. · 2023 · Nucleic Acids Research
Integration of scRNA-seq data by disentangled representation learning with condition domain adaptation
Renjing Liu, Kun Qian, Xinwei He, Hongwei Li · 2024 · BMC Bioinformatics
Cell-Specific RNA Quantification in Human SN DA Neurons from Heterogeneous Post-mortem Midbrain Samples by UV-Laser Microdissection and RT-qPCR
Johanna Duda, Michael Fauler, Jan Gründemann, Birgit Liss · 2018 · Methods in molecular biology
Comparative analysis of single-cell parallel sequencing approaches in oocyte application
Yan Qian, Jinyue Liao, Ashley Hoi Ching Suen, Annie Wing-Tung Lee, Hoi Sze Chung, Nelson L.S. Tang, King Lau Chow, Qin Cao, Yuk Lap Yip, Tak Yeung Leung et al. · 2018 · The International Journal of Biochemistry & Cell Biology
Cholesterol Sulfotransferase SULT2B1b Modulates Sensitivity to Death Receptor Ligand TNFα in Castration-Resistant Prostate Cancer
Renee E. Vickman, Jiang Yang, Nadia A. Lanman, Gregory M. Cresswell, Faye Zheng, Chi Zhang, Rebecca W. Doerge, Scott A. Crist, Andrew D. Mesecar, Chang‐Deng Hu et al. · 2019 · Molecular Cancer Research
Targeted transcript quantification in single disseminated cancer cells after whole transcriptome amplification
Franziska C. Durst, Ana Grujovic, Iris Ganser, Martin Hoffmann, Péter Ugocsai, Christoph A. Klein, Zbigniew T. Czyż · 2019 · PLoS ONE
M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data
Yu Zhang, Changlin Wan, Pengcheng Wang, Wennan Chang, Yan Huo, Jian Chen, Qin Ma, Sha Cao, Chi Zhang · 2019 · BMC Bioinformatics