Comparative Analysis of Single-Cell RNA Sequencing Methods
Ziegenhain, Christoph, Vieth, Beate, Parekh, Swati, Reinius, Björn, Guillaumet-Adkins, Amy, Smets, Martha, Leonhardt, Heinrich, Heyn, Holger +2 more·2017·Molecular Cell
Cited by (1,003)
Items 101–200 of 1,003
- Library preparation for next generation sequencing: A review of automation strategiesJacob Friedrich Hess, Thomas Andreas Kohl, Michaela Kotrová, Kerstin Rönsch, Tobias Paprotka, Vanessa Mohr, Tobias Hutzenlaub, Monika Brüggemann, Roland Zengerle, Stefan Niemann et al. · 2020 · Biotechnology Advances
- Single-cell sequencing to multi-omics: technologies and applicationsWu, Xiangyu, Yang, Xin, Dai, Yunhan, Zhao, Zihan, Zhu, Junmeng, Guo, Hongqian, Yang, Rong · 2024 · Biomarker Research
- Introduction to Single‐Cell RNA SequencingThale Kristin Olsen, Ninib Baryawno · 2018 · Current Protocols in Molecular Biology
- Single-cell transcriptomics in cancer: computational challenges and opportunitiesJean Fan, Kamil Slowikowski, Fan Zhang · 2020 · Experimental & Molecular Medicine
- A Single-Cell Sequencing Guide for ImmunologistsPeter See, Josephine Lum, Jinmiao Chen, Florent Ginhoux · 2018 · Frontiers in Immunology
- Single-cell transcriptomic analysis of somatosensory neurons uncovers temporal development of neuropathic painKaikai Wang, Sashuang Wang, Yan Chen, Dan Wu, Xinyu Hu, Ying‐Jin Lu, Liping Wang, Lan Bao, Changlin Li, Xu Zhang · 2021 · Cell Research
- Network Medicine in the Age of Biomedical Big DataAbhijeet R. Sonawane, Scott T. Weiss, Kimberly Glass, Amitabh Sharma · 2019 · Frontiers in Genetics
- Single-Cell RNA-Seq of Mouse Olfactory Bulb Reveals Cellular Heterogeneity and Activity-Dependent Molecular Census of Adult-Born NeuronsTepe, Burak, Hill, Matthew C., Pekarek, Brandon T., Hunt, Patrick J., Martin, Thomas J., Martin, James F., Arenkiel, Benjamin R. · 2018 · Cell Reports
- scAI: an unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profilesSuoqin Jin, Lihua Zhang, Qing Hua Nie · 2020 · Genome biology
- Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiersYu Fu, Pei‐Hsuan Wu, Timothy Jason Beane, Phillip D. Zamore, Zhiping Weng · 2018 · BMC Genomics
- Technological advances in cancer immunity: from immunogenomics to single‐cell analysis and artificial intelligenceXu, Ying, Su, Guan-Hua, Ma, Ding, Xiao, Yi, Shao, Zhi-Ming, Jiang, Yi-Zhou · 2021 · Signal Transduction and Targeted Therapy
- Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stressAudrey P. Gasch, Feiqiao Brian Yu, James Hose, Leah E. Escalante, Michael Place, Rhonda L. Bacher, Jad N. Kanbar, Doina Ciobanu, Laura Sandor, Igor V. Grigoriev et al. · 2017 · PLoS Biology
- Fibroblasts: Immunomodulatory factors in refractory diabetic wound healingYe Liu, Yiqiu Liu, Wenjie He, Xingrui Mu, Xingqian Wu, Junyu Deng, Xuqiang Nie · 2022 · Frontiers in Immunology
- GATA2/3-TFAP2A/C transcription factor network couples human pluripotent stem cell differentiation to trophectoderm with repression of pluripotencyChristian Krendl, Dmitry Shaposhnikov, Valentyna M. Rishko, Chaido Ori, Christoph Ziegenhain, Steffen Sass, Lukas Mikolaj Simon, Nikola S. Müller, Tobias Straub, Kelsey E. Brooks et al. · 2017 · Proceedings of the National Academy of Sciences
- Platforms for Single-Cell Collection and AnalysisLukáš Valihrach, Peter Androvic, Mikael Kubista · 2018 · International Journal of Molecular Sciences
- Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell TypesLeonard Cheung, Akima S George, Stacey R McGee, Alexandre Z. Daly, Michelle Lynn Brinkmeier, Buffy Sue Ellsworth, Sally Ann Camper · 2018 · Endocrinology
- Exploring functional protein covariation across single cells using nPOPAndrew Leduc, R. Gray Huffman, Joshua Cantlon-Bruce, Saad Khan, Nikolai Slavov · 2022 · Genome biology
- Next-generation computational tools for interrogating cancer immunityFrancesca Finotello, Dietmar Rieder, Hubert Hackl, Zlatko Trajanoski · 2019 · Nature Reviews Genetics
- Single Cell T Cell Receptor Sequencing: Techniques and Future ChallengesMarco Claudio De Simone, Grazisa Rossetti, Massimiliano Pagani · 2018 · Frontiers in Immunology
- powsimR: power analysis for bulk and single cell RNA-seq experimentsVieth, Beate, Ziegenhain, Christoph, Parekh, Swati, Enard, Wolfgang, Hellmann, Ines · 2017 · Bioinformatics
- CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing dataAkdes Serin Harmancı, Arif O. Harmanci, Xiaobo Zhou · 2020 · Nature Communications
- Single-Cell RNA Sequencing: Unraveling the Brain One Cell at a TimeDimitry Ofengeim, Νικόλαος Γιαγτζόγλου, Dann Huh, Chengyu Zou, Junying Yuan · 2017 · Trends in Molecular Medicine
- Realizing the potential of full-length transcriptome sequencingAshley Byrne, Charles Cole, Roger Volden, Christopher Vollmers · 2019 · Philosophical Transactions of the Royal Society B Biological Sciences
- Microfluidics applications for high-throughput single cell sequencingWen-min Zhou, Yan‐yan Yan, Qiao-ru Guo, Hong Ji, Hui Wang, Tian-tian Xu, Bolat Makabel, Christian P. Pilarsky, Gen He, Xi-Yong Yu et al. · 2021 · Journal of Nanobiotechnology
- Single-cell RNAseq for the study of isoforms—how is that possible?Ángeles Arzalluz-Luque, Ana Conesa · 2018 · Genome biology
- Single Cell RNA Sequencing in Atherosclerosis ResearchJesse W. Williams, Holger Winkels, Christopher P. Durant, Konstantin Zaitsev, Yanal Ghosheh, Klaus F. Ley · 2020 · Circulation Research
- Impact of similarity metrics on single-cell RNA-seq data clusteringKim, Taiyun, Chen, Irene Rui, Lin, Yingxin, Wang, Andy Yi-Yang, Yang, Jean Yee Hwa, Yang, Pengyi · 2019 · Briefings in Bioinformatics
- Classification and experimental identification of plant long non-coding RNAsMuneeza I. Rai, Maheen Alam, David A. Lightfoot, Priyatansh Gurha, Ahmed Jawaad Afzal · 2018 · Genomics
- A Public BCR Present in a Unique Dual-Receptor-Expressing Lymphocyte from Type 1 Diabetes Patients Encodes a Potent T Cell AutoantigenRizwan Ahmed, Zahra Omidian, Adebola Giwa, Benjamin Cornwell, Neha Majety, David R. Bell, Sangyun Lee, Hao Zhang, Aaron W. Michels, Stephen V. Desiderio et al. · 2019 · Cell
- Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence readsYohei Sasagawa, Hiroki Danno, Hitomi Takada, Masashi Ebisawa, Kaori Y. Tanaka, Tetsutaro Hayashi, Akira Kurisaki, Itoshi Nikaido · 2018 · Genome biology
- The Coordination of Ethylene and Other Hormones in Primary Root DevelopmentHua Qin, Lina He, Rongfeng Huang · 2019 · Frontiers in Plant Science
- Deep-joint-learning analysis model of single cell transcriptome and open chromatin accessibility dataChunman Zuo, Luonan Chen · 2020 · Briefings in Bioinformatics
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq dataFlorian Wagner, Yun Yan, Itai Yanai · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
- VIPER: variability-preserving imputation for accurate gene expression recovery in single-cell RNA sequencing studiesMengjie Chen, Xiang Zhou · 2018 · Genome biology
- Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISHEduardo A. Torre, Hannah Dueck, Sydney M. Shaffer, Janko Gospočić, Rohit K. Gupte, Roberto Bonasio, Junhyong Kim, John I. Murray, Arjun Raj · 2018 · Cell Systems
- Simulating multiple faceted variability in single cell RNA sequencingXiuwei Zhang, Chenling A. Xu, Nir Yosef · 2019 · Nature Communications
- Fibroblasts – the cellular choreographers of wound healingSamuel A. Knoedler, Sonja Broichhausen, Ruiji Guo, Ruoxuan Dai, Leonard Knoedler, Martin Kauke‐Navarro, Fortunay H. Diatta, Bohdan Pomahač, Hans‐Günther Machens, Dongsheng Jiang et al. · 2023 · Frontiers in Immunology
- Single-cell transcriptomics identifies Mcl-1 as a target for senolytic therapy in cancerMartina Troiani, Manuel Colucci, Mariantonietta D’Ambrosio, Ilaria Guccini, Emiliano Pasquini, Angelica Varesi, Aurora Valdata, Simone Mosole, Ajinkya Revandkar, Giuseppe Attanasio et al. · 2022 · Nature Communications
- Immune cell profiling in atherosclerosis: role in research and precision medicineDawn M. Fernandez, Chiara Giannarelli · 2021 · Nature Reviews Cardiology
- Droplet control technologies for microfluidic high throughput screening (μHTS)Muhsincan Şeşen, Tuncay Alan, Adrian Neild · 2017 · Lab on a Chip
- Single Cell RNA Sequencing of Rare Immune Cell PopulationsAkira Nguyen, Weng Hua Khoo, Imogen Moran, Peter Ian Croucher, Tri Giang Phan · 2018 · Frontiers in Immunology
- Advancements in single-cell RNA sequencing and spatial transcriptomics: transforming biomedical researchGetnet Molla Desta, Alemayehu Godana Birhanu · 2025 · Acta Biochimica Polonica
- UMI-count modeling and differential expression analysis for single-cell RNA sequencingChen, Wenan, Li, Yan, Easton, John, Finkelstein, David, Wu, Gang, Chen, Xiang · 2018 · Genome Biology
- Power in Numbers: Single-Cell RNA-Seq Strategies to Dissect Complex TissuesKenneth D. Birnbaum · 2018 · Annual Review of Genetics
- Single-Cell RNA-Seq of the Pancreatic Islets––a Promise Not yet Fulfilled?Yue Julia Wang, Klaus H. Kaestner · 2018 · Cell Metabolism
- Comparative analysis of sequencing technologies for single-cell transcriptomicsKedar Nath Natarajan, Zhichao Miao, Miaomiao Jiang, Xiaoyun Huang, Hongpo Zhou, Jiarui Xie, Chunqing Wang, Shishang Qin, Zhikun Zhao, Liang Li Wu et al. · 2019 · Genome biology
- Image-Based Single Cell Sorting Automation in Droplet MicrofluidicsMuhsincan Şeşen, Graeme Whyte · 2020 · Scientific Reports
- FGF21 suppresses alcohol consumption through an amygdalo-striatal circuitKyle H. Flippo, Samuel A.J. Trammell, Matthew Paul Gillum, İltan Aklan, Misty B. Perez, Yavuz Yavuz, Nicholas K. Smith, Sharon O. Jensen-Cody, Bolu Zhou, Kristin E. Claflin et al. · 2022 · Cell Metabolism
- XYZeq: Spatially resolved single-cell RNA sequencing reveals expression heterogeneity in the tumor microenvironmentYoujin Lee, Derek Bogdanoff, Yutong Wang, George C. Hartoularos, Jonathan M. Woo, Cody T. Mowery, Hunter M. Nisonoff, David S. Lee, Yang Sun, James Lee et al. · 2021 · Science Advances
- Single-cell RNA sequencing reveals B cell–related molecular biomarkers for Alzheimer’s diseaseXiong, Liu-Lin, Xue, Lu-Lu, Du, Ruo-Lan, Niu, Rui-Ze, Chen, Li, Chen, Jie, Hu, Qiao, Tan, Ya-Xin, Shang, Hui-Fang, Liu, Jia et al. · 2021 · Experimental & Molecular Medicine
- A multicenter study benchmarking single-cell RNA sequencing technologies using reference samplesChen, Wanqiu, Zhao, Yongmei, Chen, Xin, Yang, Zhaowei, Xu, Xiaojiang, Bi, Yingtao, Chen, Vicky, Li, Jing, Choi, Hannah, Ernest, Ben et al. · 2021 · Nature Biotechnology
- From tissues to cell types and back: single-cell gene expression analysis of tissue architectureChen, Xi, Teichmann, Sarah A., Meyer, Kerstin B. · 2018 · Annual Review of Biomedical Data Science
- A distinct D1-MSN subpopulation down-regulates dopamine to promote negative emotional stateZhiyuan Liu, Qiumin Le, Yanbo Lv, Xi Chen, Jian Cui, Yiming Zhou, Deqin Cheng, Chaonan Ma, Xiujuan Su, Lei Xiao et al. · 2021 · Cell Research
- Circulating Tumor Cells as a Tool for Assessing Tumor HeterogeneityMarta Tellez Gabriel, Marie‐Françoise Heymann, Dominique Heymann · 2019 · Theranostics
- Single-Cell Transcriptome Analysis of Uniparental Embryos Reveals Parent-of-Origin Effects on Human Preimplantation DevelopmentLizhi Leng, Jiya Sun, Jinrong Huang, Fei Gong, Ling Mei Yang, Shuoping Zhang, Xuye Yuan, Fang Fang, Xun Xu, Yonglun Luo et al. · 2019 · Cell stem cell
- Single-cell RNA sequencing reveals the mesangial identity and species diversity of glomerular cell transcriptomesBing He, Ping Chen, Sonia S. Zambrano, Dina Dabaghie, Yizhou Hu, Katja Möller‐Hackbarth, David Unnersjö‐Jess, Gül Gizem Korkut, Emmanuelle Charrin, Marie Jeansson et al. · 2021 · Nature Communications
- scDesign2: a transparent simulator that generates high-fidelity single-cell gene expression count data with gene correlations capturedTianyi Sun, Dongyuan Song, Wei Vivian Li, Jingyi Jessica Li · 2021 · Genome biology
- Single cell RNA-seq reveals the CCL5/SDC1 receptor-ligand interaction between T cells and tumor cells in pancreatic cancerKai Chen, Yazhou Wang, Yuting Hou, Qi Wang, Di Long, Xinxin Liu, Xiaodong Tian, Yinmo Yang · 2022 · Cancer Letters
- Towards Building a Plant Cell AtlasSeung Y. Rhee, Kenneth D. Birnbaum, David W. Ehrhardt · 2019 · Trends in Plant Science
- netNMF-sc: leveraging gene–gene interactions for imputation and dimensionality reduction in single-cell expression analysisRebecca Elyanow, Bianca Dumitrascu, Barbara Elizabeth Engelhardt, Benjamin J. Raphael · 2020 · Genome Research
- Droplet-based single cell RNAseq tools: a practical guideSalomon, Robert, Kaczorowski, Dominik, Valdes-Mora, Fatima, Nordon, Robert E., Neild, Adrian, Farbehi, Nona, Bartonicek, Nenad, Gallego-Ortega, David · 2019 · Lab on a Chip
- Single-cell genomic approaches for developing the next generation of immunotherapiesIdo Yofe, Rony Dahan, Ido Amit · 2020 · Nature Medicine
- miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing dataAriel A. Hippen, Matías Marín Falco, Lukas M. Weber, Erdoğan Pekcan Erkan, Kaiyang Zhang, Jennifer A. Doherty, Anna Vähärautio, Casey S. Greene, Stephanie C. Hicks · 2021 · PLoS Computational Biology
- scPower accelerates and optimizes the design of multi-sample single cell transcriptomic studiesSchmid, Katharina T., Höllbacher, Barbara, Cruceanu, Cristiana, Böttcher, Anika, Lickert, Heiko, Binder, Elisabeth B., Theis, Fabian J., Heinig, Matthias · 2021 · Nature Communications
- Computational approaches for interpreting sc<scp>RNA</scp>‐seq dataRostom, Raghd, Svensson, Valentine, Teichmann, Sarah A., Kar, Gozde · 2017 · FEBS Letters
- De novo gene signature identification from single‐cell RNA‐seq with hierarchical Poisson factorizationHanna Mendes Levitin, Jinzhou Yuan, Yim Ling Cheng, Francisco J. R. Ruiz, Erin C. Bush, Jeffrey N. Bruce, Peter Canoll, Antonio Iavarone, Anna Lasorella, David M. Blei et al. · 2019 · Molecular Systems Biology
- Systematic comparative analysis of single cell RNA-sequencing methodsJiarui Ding, Xian Adiconis, Sean Simmons, Monika S. Kowalczyk, Cynthia C. Hession, Nemanja Despot Marjanovic, Travis K. Hughes, Marc H. Wadsworth, Tyler Burks, Lan Nguyễn et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Molecular Profiling of Resident and Infiltrating Mononuclear Phagocytes during Rapid Adult Retinal Degeneration Using Single-Cell RNA SequencingRonning, Kaitryn E., Karlen, Sarah J., Miller, Eric B., Burns, Marie E. · 2019 · Scientific Reports
- SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq dataTao Peng, Qin Zhu, Peng-Hang Yin, Kai Tan · 2019 · Genome Biology
- Spatial organization of transcribed eukaryotic genesSusanne Leidescher, Johannes Ribisel, Simon Ullrich, Yana N. Feodorova, Erica M. Hildebrand, Aleksandra A. Galitsyna, Sebastian Bultmann, Stephanie Link, Katharina Thanisch, Christopher B. Mulholland et al. · 2022 · Nature Cell Biology
- Understanding tumour cell heterogeneity and its implication for immunotherapy in liver cancer using single-cell analysisSophia Heinrich, Amanda J. Craig, Lichun Ma, Bernd Heinrich, Tim F. Greten, Xin Wei Wang · 2020 · Journal of Hepatology
- Single-cell RNA-seq analysis of mouse preimplantation embryos by third-generation sequencingXiaoying Fan, Dong Tang, Yuhan Liao, Pidong Li, Yu Zhang, Minxia Wang, Fan Liang, Xiao Wang, Yun Gao, Lu Wen et al. · 2020 · PLoS Biology
- Patch-seq: Past, Present, and FutureMarcela Lipovsek, Cédric Bardy, Cathryn René Cadwell, Kristen Hadley, Dmitry Kobak, Shreejoy J. Tripathy · 2021 · Journal of Neuroscience
- Diversity of satellite glia in sympathetic and sensory gangliaAurelia A Mapps, Michael B Thomsen, Erica D. Boehm, Haiqing Zhao, Samer S Hattar, Rejji Kuruvilla · 2022 · Cell Reports
- The role of tumor microenvironment in drug resistance: emerging technologies to unravel breast cancer heterogeneityVincenzo Salemme, Giorgia Centonze, Lidia Avalle, Dora Natalini, Alessio Piccolantonio, Pietro Arina, Alessandro Morellato, Ugo Ala, Daniela Taverna, Emilia Turco et al. · 2023 · Frontiers in Oncology
- Dux-Mediated Corrections of Aberrant H3K9ac during 2-Cell Genome Activation Optimize Efficiency of Somatic Cell Nuclear TransferGuang Yang, Linfeng Zhang, Wenqiang Liu, Zhibin Qiao, Shijun Shen, Qianshu Zhu, Rui Gao, Mengting Wang, Mingzhu Wang, Chong Li et al. · 2020 · Cell stem cell
- Prime-seq, efficient and powerful bulk RNA sequencingAleksandar Janjic, Lucas Esteban Wange, Johannes Bagnoli, Johanna Geuder, Phong Nguyen, Daniel Richter, Beate Vieth, Binje Vick, Irmela Jeremias, Christoph Ziegenhain et al. · 2022 · Genome biology
- Profiling gene expression in the human dentate gyrus granule cell layer reveals insights into schizophrenia and its genetic riskAndrew E. Jaffe, Daniel J. Hoeppner, Takeshi Saito, Lou T. Blanpain, Joy Ukaigwe, Emily E. Burke, Leonardo Collado‐Torres, Ran Tao, Katsunori Tajinda, Kristen R. Maynard et al. · 2020 · Nature Neuroscience
- Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicineYunjin Li, Lu Ma, Duojiao Wu, Geng Chen · 2021 · Briefings in Bioinformatics
- Single-cell RNA sequencing in cancer: Applications, advances, and emerging challengesGuangshun Sun, Zhouxiao Li, Dawei Rong, Hao Zhang, Xuesong Shi, Weijun Yang, Wubin Zheng, Guoqiang Sun, Fan Wu, Hongyong Cao et al. · 2021 · Molecular Therapy — Oncolytics
- The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune DiseasesJuan Antonio Vizcaíno, Peter Kubiniok, Kevin A. Kovalchik, Qing Ma, Jérôme D. Duquette, Ian Mongrain, Eric W. Deutsch, Bjoern Peters, Alessandro Sette, Isabelle Sirois et al. · 2019 · Molecular & Cellular Proteomics
- Guidelines for bioinformatics of single-cell sequencing data analysis in Alzheimer’s disease: review, recommendation, implementation and applicationMinghui Wang, Won‐Min Song, Ming Chen, Qian Wang, Xianxiao Zhou, Peng Xu, Azra Krek, Yonejung Yoon, Lap Ho, Miranda E. Orr et al. · 2022 · Molecular Neurodegeneration
- Non-templated addition and template switching by Moloney murine leukemia virus (MMLV)-based reverse transcriptases co-occur and compete with each otherMadalee G. Wulf, Sean Maguire, Paul Humbert, Nan Dai, Yanxia Bei, Nicole M. Nichols, Ivan Reis Correa Junior, Shengxi Guan · 2019 · Journal of Biological Chemistry
- Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studiesMa, Ying, Sun, Shiquan, Shang, Xuequn, Keller, Evan T., Chen, Mengjie, Zhou, Xiang · 2020 · Nature Communications
- Translational opportunities of single-cell biology in atherosclerosisMenno P.J. de Winther, Magnus Bäck, Paul Charles Evans, Delphine A Gomez, Isabel Gonçalves, Helle Færk Jørgensen, Rory R. Koenen, Esther Lutgens, Giuseppe Danilo Norata, Elena Osto et al. · 2022 · European Heart Journal
- Systematic comparison of high-throughput single-cell RNA-seq methods for immune cell profilingTracy Yamawaki, Daniel Lu, Daniel Christian Ellwanger, Dev M. Bhatt, Paolo S. Manzanillo, Vanessa Arias, Hong Zhou, Oh Kyu Yoon, Oliver R. Homann, Songli Wang et al. · 2021 · BMC Genomics
- How to design a single-cell RNA-sequencing experiment: pitfalls, challenges and perspectivesAlessandra Dal Molin, Barbara Di Camillo · 2018 · Briefings in Bioinformatics
- Single-cell sequencing: a promising approach for uncovering the mechanisms of tumor metastasisYingying Han, Dan Wang, Lushan Peng, Tao Huang, Xiaoyun He, Junpu Wang, Chunlin Ou · 2022 · Journal of Hematology & Oncology
- Unravelling glioblastoma heterogeneity by means of single-cell RNA sequencingAna Hernández Martínez, Rodrigo Madurga, Noemí Garcia‐Romero, Ángel Ayuso‐Sacido · 2021 · Cancer Letters
- Single-cell immunology: Past, present, and futureFlorent Ginhoux, Adam Yalin, Charles‐Antoine Dutertre, Ido Amit · 2022 · Immunity
- Integrative Multi-Omics Approaches for Identifying and Characterizing Biological Elements in Crop Traits: Current Progress and Future ProspectsBing-Liang Fan, Lin-Hua Chen, Lingling Chen, Hao Guo · 2025 · International Journal of Molecular Sciences
- Single-Cell RNA Sequencing in Lung Cancer: Revealing Phenotype Shaping of Stromal Cells in the MicroenvironmentJianhong Zhang, Chengyang Song, Ye F. Tian, Xueying Yang · 2022 · Frontiers in Immunology
- Machine learning: its challenges and opportunities in plant system biologyMohsen Hesami, Milad Alizadeh, Andrew Maxwell Phineas Jones, Davoud Torkamaneh · 2022 · Applied Microbiology and Biotechnology
- EndoDB: a database of endothelial cell transcriptomics dataShawez Khan, Federico Taverna, Kateřina Rohlenová, Lucas Treps, Vincent Geldhof, Laura P. M. H. de Rooij, Liliana Sokol, Andreas Pircher, Lena‐Christin Conradi, Joanna Maria Kalucka et al. · 2018 · Nucleic Acids Research
- Isoform cell-type specificity in the mouse primary motor cortexA. Sina Booeshaghi, Zizhen Yao, Cindy T. J. van Velthoven, Kimberly A. Smith, Bosiljka Tasic, Hongkui Zeng, Lior S. Pachter · 2021 · Nature
- Systems Immunology: Learning the Rules of the Immune SystemAlexandra–Chloé Villani, Siranush Sarkizova, Nir Hacohen · 2018 · Annual Review of Immunology
- Single-cell transcriptome-based multilayer network biomarker for predicting prognosis and therapeutic response of gliomasJi Zhang, Meige Guan, Qianliang Wang, Jiajun Zhang, Tianshou Zhou, Xiaoqiang Sun · 2019 · Briefings in Bioinformatics
- Single cell approaches to address adipose tissue stromal cell heterogeneityElizabeth Ann Rondini, James G. Granneman · 2020 · Biochemical Journal
- FTH1- and SAT1-Induced Astrocytic Ferroptosis Is Involved in Alzheimer’s Disease: Evidence from Single-Cell Transcriptomic AnalysisYini Dang, Qing Hua He, Siyu Yang, Huaiqing Sun, Yin Liu, Wanting Li, Yi Tang, Yu Zheng, Ting Wu · 2022 · Pharmaceuticals
- Integrating the “Immunome” in the Stratification of Myelodysplastic Syndromes and Future Clinical Trial DesignSusann Winter, Saeed Shoaie, Shahram Y. Kordasti, Uwe Platzbecker · 2020 · Journal of Clinical Oncology