Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation

Siersbæk, Rasmus, Madsen, Jesper Grud Skat, Javierre, Biola Maria, Nielsen, Ronni, Bagge, Emilie Kristine, Cairns, Jonathan, Wingett, Steven William, Traynor, Sofie +3 more·2017·Molecular Cell

Cited by (247)

Items 101–200 of 247

  1. Wnt3a disrupts GR-TEAD4-PPARγ2 positive circuits and cytoskeletal rearrangement in a β-catenin-dependent manner during early adipogenesis
    Bongju Park, Soojeong Chang, Gwan-Jun Lee, Byeongsoo Kang, Jong Kyoung Kim, Hyunsung Park · 2019 · Cell Death and Disease
  2. Loss of G protein pathway suppressor 2 in human adipocytes triggers lipid remodeling by upregulating ATP binding cassette subfamily G member 1
    Serena Barilla, Ning Liang, Enrichetta Mileti, Raphaëlle Ballaire, Marie Lhomme, Maharajah Ponnaiah, Sophie Lemoine, Antoine Soprani, Jean–François Gautier, Ez‐Zoubir Amri et al. · 2020 · Molecular Metabolism
  3. The development of a high throughput drug-responsive model of white adipose tissue comprising adipogenic 3T3-L1 cells in a 3D matrix
    Alexander D Graham, Rajesh Pandey, Viktoriya S Tsancheva, Alessia Candeo, Stanley W. Botchway, Alasdair J. Allan, Lydia Teboul, Kamel Madi, Tahkur S. Babra, Louisa Zolkiewski et al. · 2019 · Biofabrication
  4. Transcriptional and epigenetic control of adipocyte remodeling during obesity
    Serena Barilla, Eckardt Treuter, Nicolas Venteclef · 2021 · Obesity
  5. Characterization of Structural Variations in the Context of 3D Chromatin Structure.
    Kyukwang Kim, Junghyun Eom, Inkyung Jung · 2019 · PubMed Central
  6. Cis-regulatory chromatin loops analysis identifies GRHL3 as a master regulator of surface epithelium commitment
    Huaxing Huang, Jiafeng Liu, Mingsen Li, Huizhen Guo, Jin Zhu, Liqiong Zhu, Siqi Wu, Kunlun Mo, Ying Huang, Jieying Tan et al. · 2022 · Science Advances
  7. Three‐dimensional genome structure and function
    Hao Liu, Hsiangyu Tsai, Maoquan Yang, Guozhi Li, Qian Bian, Gang Ding, Dandan Wu, Jiewen Dai · 2023 · MedComm
  8. 3D FISH to analyse gene domain-specific chromatin re-modeling in human cancer cell lines
    Silvia Kocanova, Isabelle Goiffon, Kerstin Bystricky · 2018 · Methods
  9. New insights emerge as antibody repertoire diversification meets chromosome conformation
    Amy L. Kenter, Ann J. Feeney · 2019 · F1000Research
  10. Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data
    Tingting Qin, Christopher Lee, Shiting Li, Raymond G. Cavalcante, Peter Orchard, Heming Yao, Hanrui Zhang, Shuze Wang, Snehal B. Patil, Alan P. Boyle et al. · 2022 · Genome biology
  11. Regulatory network of metformin on adipogenesis determined by combining high-throughput sequencing and GEO database
    Zhicong Zhao, Chenxi Wang, Jue Jia, Zhaoxiang Wang, Lian Li, Xia Deng, Zhensheng Cai, Ling Yang, Dong Wang, Suxian Ma et al. · 2022 · Adipocyte
  12. Interplay between regulatory elements and chromatin topology in cellular lineage determination.
    Vallari Shukla, A. Cetnarowska, Mette Hyldahl, S. Mandrup · 2022 · Trends in Genetics
  13. Hi-C as a molecular rangefinder to examine genomic rearrangements
    Kyukwang Kim, Mooyoung Kim, Yubin Kim, Dong-Sung Lee, Inkyung Jung · 2021 · Seminars in Cell and Developmental Biology
  14. PAX fusion proteins deregulate gene networks controlling mitochondrial translation in pediatric rhabdomyosarcoma
    Bhargab Kalita, Gerard Martínez-Cebrián, Justina D. McEvoy, Melody Lyn Allensworth, Michelle Knight, Alessandro Magli, Rita C. R. Perlingeiro, Michael A. Dyer, Elizabeth A. Stewart, Brian David Dynlacht · 2024 · Cell
  15. Melatonin alleviates the toxic effect of di(2-ethylhexyl) phthalate on oocyte quality resulting from CEBPB suppression during primordial follicle formation
    Junjie Wang, Xiaoyuan Zhang, Yue Zeng, Qingchun Liu, Xin-Lei Feng, Jiamao Yan, Minghao Li, Russel Joseph Reiter, Wei Shen · 2023 · Journal of Hazardous Materials
  16. Using functional genomics to advance the understanding of psoriatic arthritis
    Chenfu Shi, Magnus Rattray, Anne C Barton, John Bowes, Gisela Orozco · 2020 · Rheumatology
  17. Molecular Basis of the Function of Transcriptional Enhancers
    Airat N. Ibragimov, Oleg V. Bylino, Yulii V. Shidlovskii · 2020 · Cells
  18. Potential roles of super enhancers in inflammatory gene transcription
    Yoshiki Higashijima, Yasuharu Kanki · 2021 · FEBS Journal
  19. Iron Oxide Nanoparticles with and without Cobalt Functionalization Provoke Changes in the Transcription Profile via Epigenetic Modulation of Enhancer Activity
    Federica Gamberoni, Marina Borgese, Christina Pagiatakis, Ilaria Armenia, Valeria Grazú, Rosalba Gornati, Simone Serio, Roberto Papait, Giovanni Bernardini · 2023 · Nano Letters
  20. Emerging perspectives on branched-chain amino acid metabolism during adipocyte differentiation
    Daniela Salinas‐Rubio, Armando Roberto Tovar, Lilia Guadalupe Noriega · 2017 · Current Opinion in Clinical Nutrition & Metabolic Care
  21. Epigenetic control of muscle stem cells: time for a new dimension
    Valeria Bianconi, Chiara Mozzetta · 2022 · Trends in Genetics
  22. Hierarchical role for transcription factors and chromatin structure in genome organization along adipogenesis
    Avital Sarusi-Portuguez, Michal Schwartz, Rasmus Siersbæk, Ronni Nielsen, Myong‐Hee Sung, Susanne Mandrup, Tommy Kaplan, Ofir Hakim · 2017 · FEBS Journal
  23. Critical roles of transcriptional coactivator MED1 in the formation and function of mouse adipose tissues
    Keiichi Ito, Marc Schneeberger, Alan Gerber, Miki Jishage, François Marchildon, Aarthi V. Maganti, Paul Cohen, Jeffrey M. Friedman, Robert G. Roeder · 2021 · Genes & Development
  24. The Placenta Regulates Intrauterine Fetal Growth via Exosomal PPARγ
    Xiaofang Luo, Biao Huang, Ping A. Xu, Hao Wang, Baozhen Zhang, Li Lin, Jiujiang Liao, Mingyu Hu, Xiyao Liu, Jiayu Huang et al. · 2025 · Advanced Science
  25. A global high-density chromatin interaction network reveals functional long-range and trans-chromosomal relationships
    Ruchi Lohia, Nathan Fox, Jesse A Gillis · 2022 · Genome biology
  26. Probabilistic establishment of speckle-associated inter-chromosomal interactions
    Jaegeon Joo, Sunghyun Cho, Sukbum Hong, Sunwoo Min, Kyukwang Kim, Rajeev Kumar, Jeong‐Mo Choi, Yongdae Shin, Inkyung Jung · 2023 · Nucleic Acids Research
  27. GOPHER: Generator Of Probes for capture Hi-C Experiments at high Resolution
    P. Hansen, Salaheddine Ali, Hannah Blau, D. Danis, Jochen Hecht, U. Kornak, D. G. Lupiáñez, S. Mundlos, Robin Steinhaus, P. Robinson · 2019 · BMC Genomics
  28. Regulation of adipogenesis by histone methyltransferases.
    Yuanxiang Zhao, Zachary Skovgaard, Qinyi Wang · 2024 · Differentiation; research in biological diversity
  29. Active enhancers: recent research advances and insights into disease
    Junyou Zhang, Qilin Wang, Jiaxin Liu, Yingying Duan, Zhaoshuo Liu, Ziyi Zhang, Chunyan Li · 2024 · Biology Direct
  30. KLF2 Orchestrates Pathological Progression of Infantile Hemangioma through Hemangioma Stem Cell Fate Decisions
    Qiming Chen, Hao Rong, Ling Zhang, Yanan Wang, Qian Bian, Jiawei Zheng · 2024 · Journal of Investigative Dermatology
  31. Structure and Functions of the Mediator Complex
    Egor V. Putlyaev, Airat N. Ibragimov, Lyubov A. Lebedeva, Pavel G Georgiev, Yulii V. Shidlovskii · 2018 · Biochemistry (Moscow)
  32. Integrated lipidomics and RNA sequencing analysis reveal novel changes during 3T3-L1 cell adipogenesis
    Yangli Pei, Yuxin Song, Bingyuan Wang, Chenghong Lin, Ying Yang, Hua Li, Zheng Feng · 2022 · PeerJ
  33. Biology and Model Predictions of the Dynamics and Heterogeneity of Chromatin-Nuclear Lamina Interactions
    Julia Madsen-Østerbye, A. Bellanger, N. Galigniana, P. Collas · 2022 · Frontiers in Cell and Developmental Biology
  34. Identification of a distal enhancer of Ucp1 essential for thermogenesis and mitochondrial function in brown fat
    Duo Su, Tingting Jiang, Yulong Song, Die Li, Siyuan Zhan, Tao Zhong, Jiazhong Guo, Li Li, Hongping Zhang, Linjie Wang · 2025 · Communications Biology
  35. Cell Fate Regulation During the Development of Infantile Hemangioma
    Qiming Chen, Jiawei Zheng, Qian Bian · 2024 · Journal of Investigative Dermatology
  36. SFPQ associated with a co-activator for PPARγ, HELZ2, regulates key nuclear factors for adipocyte differentiation
    Akiko Katano-Toki, Satoshi Yoshino, Yasuyo Nakajima, Takuya Tomaru, Ayaka Nishikido, Emi Ishida, Kazuhiko Horiguchi, Tsugumichi Saito, Atsushi Ozawa, Tetsurou Satoh et al. · 2021 · Biochemical and Biophysical Research Communications
  37. Spatial orchestration of the genome: topological reorganisation during X-chromosome inactivation
    Alexandra Martitz, Edda G. Schulz · 2024 · Current Opinion in Genetics & Development
  38. Histone deacetylation and cytosine methylation compartmentalize heterochromatic regions in the genome organization of Neurospora crassa
    Ashley W. Scadden, Alayne S. Graybill, Clayton Hull-Crew, Tiffany J. Lundberg, Nickolas M. Lande, Andrew D. Klocko · 2023 · Proceedings of the National Academy of Sciences
  39. Modelling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytes
    Mahmoud Ahmed, Deok Ryong Kim · 2019 · Adipocyte
  40. Single-nuclei chromatin profiling of ventral midbrain reveals cell identity transcription factors and cell-type-specific gene regulatory variation
    Yujuan Gui, Kamil Grzyb, Mélanie H. Thomas, Jochen Ohnmacht, Pierre Garcia, Manuel Buttini, Alexander Skupin, Thomas Sauter, Lasse Sinkkonen · 2021 · Epigenetics & Chromatin
  41. Exploring high-resolution chromatin interaction changes and functional enhancers of myogenic marker genes during myogenic differentiation
    Keren Long, Xiaokai Li, Duo Su, Sha Zeng, Hengkuan Li, Yu Zhang, Biwei Zhang, Wenying Yang, Penghao Li, Xuemin Li et al. · 2022 · Journal of Biological Chemistry
  42. Technologies, strategies, and cautions when deconvoluting genome‐wide association signals: FTO in focus
    Matthew C. Pahl, Struan F.A. Grant, Rudolph L. Leibel, George Stratigopoulos · 2023 · Obesity Reviews
  43. Regulatory elements can be essential for maintaining broad chromatin organization and cell viability
    Ying Liu, Bo Ding, Lina Zheng, Ping Xu, Zhiheng Liu, Zhao Chen, Peiyao Wu, Ying Zhao, Qian Pan, Yu Guo et al. · 2022 · Nucleic Acids Research
  44. Cellular reprogramming is driven by widespread rewiring of promoter-enhancer interactions
    Miao Wang, Bing He, Yueling Hao, Divyaa Srinivasan, Jatin Shrinet, Peter Fraser · 2023 · BMC Biology
  45. Gene activation and repression by the glucocorticoid receptor are mediated by sequestering Ep300 and two modes of chromatin binding
    Avital Sarusi-Portuguez, Ivana Grbeša, Moran Tal, Rachel Deitch, Dana Raz, Ran Weismann, Michal Schwartz, Olga Loza, Myong‐Hee Sung, Tommy Kaplan et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  46. Repair of DNA double-strand breaks leaves heritable impairment to genome function
    Susanne C. S. Bantele, Irene Mordini, Alva Biran, Nicolás Alcaraz, Alice Wenger, Nils Krietenstein, Anja Groth, Jiri Lukas · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  47. Comparative three-dimensional genome architectures of adipose tissues provide insight into human-specific regulation of metabolic homeostasis
    Pengliang Liu, Diyan Li, Jiaman Zhang, Mengnan He, Dengfeng Gao, Yujie Wang, Yu Lin, Dengke Pan, Penghao Li, Tao Wang et al. · 2023 · Journal of Biological Chemistry
  48. Hierarchical regulation of autophagy during adipocyte differentiation
    Mahmoud Ahmed, Trang Huyen Lai, Trang Minh Pham, Sahib Zada, Omar Elashkar, Jin Seok Hwang, Deok Ryong Kim · 2022 · PLoS ONE
  49. A Small Fraction of Progenitors Differentiate Into Mature Adipocytes by Escaping the Constraints on the Cell Structure
    Mahmoud Ahmed, Trang Huyen Lai, Deok Ryong Kim · 2021 · Frontiers in Cell and Developmental Biology
  50. Guiding the design of well-powered Hi-C experiments to detect differential loops
    Sarah M Parker, Eric S. Davis, Douglas H. Phanstiel · 2023 · Bioinformatics Advances
  51. LXRα Regulates ChREBPα Transactivity in a Target Gene-Specific Manner through an Agonist-Modulated LBD-LID Interaction
    Qiong Fan, Rikke C. Nørgaard, Ivar Grytten, Cecilie Maria Ness, Christin Lucas, Kristin Vekterud, Helen M. Soedling, Jason B. Matthews, Roza Berhanu Lemma, Odd S. Gabrielsen et al. · 2020 · Cells
  52. Citrinal B, natural 11 beta-hydroxysteroid dehydrogennase type 1 inhibitor identified from structure-based virtual screening
    Jie Cao, Limin Gao, Yizhan Chen, Weiguang Sun, Fuqian Wang, Hua Li, Yonghui Zhang · 2017 · Fitoterapia
  53. 3D Genome Architecture in Stem Cell Lineage Commitment: from Structural Organization to Precision Regulation
    Yong He, Wenrui Li, Lin Li, Ying Yang, Yutong Lu, Yufei Pan, Qīng Wáng, Yuqiang Sun, Yuxuan Xie, Mingyue Wu et al. · 2025 · Advanced Genetics
  54. Anti-obesity Effects of Panax ginseng-derived exosomes via AMPK-mediated inhibition of adipocyte differentiation and lipogenesis
    Moon Hi Han, Sunhye Lee, Youn Seon Hwang, Jong Hyun Oh, Jin Woo KIM · 2026 · Natural Products and Bioprospecting
  55. Inhibition of triglyceride metabolism‐associated enhancers alters lipid deposition during adipocyte differentiation
    Sha Zeng, Ziqi Li, Xiaokai Li, Qinjiao Du, Yu Zhang, Zhining Zhong, Haoming Wang, Songling Zhang, Penghao Li, Haohuan Li et al. · 2025 · The FASEB Journal
  56. Extensive enhancer crosstalk controls PPARG2 activation during adipogenesis
    Anna Cetnarowska, Mette Hyldahl, Marcus Nygård, Hesam Dashti, Bo Mølholm Hansen, Laura Kristine Holm, Kaja Madsen, Maria S. Madsen, Vallari Shukla, Esra Durmaz Mitchell et al. · 2026 · Nature Communications
  57. Long-range chromosomal interactions increase and mark repressed gene expression during adipogenesis
    Kristina M. Garske, Caroline Comenho, David Z. Pan, Marcus Alvarez, Karen L. Mohlke, Markku Laakso, Kirsi Hannele Pietiläinen, Päivi Pajukanta · 2022 · Epigenetics
  58. Morphological and molecular characterization of GALNT2-mediated adipogenesis
    Alessandra Antonucci, Antonella Marucci, Maria Giovanna Scarale, Concetta De Bonis, Davide Mangiacotti, Vincenzo Trischitta, Rosa Di Paola · 2021 · International Journal of Obesity
  59. Nuclear and chromatin rearrangement associate to epigenome and gene expression changes in a model of in vitro adipogenesis and hypertrophy
    Francesca Baldini, Lama Zeinab Zeaiter, Farah Diab, Hawraa Zbeeb, Lisa Cuneo, Aldo Pagano, Piero Portincasa, Alberto Diaspro, Laura Vergani · 2023 · Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids
  60. Nuclear receptor coregulator interactions: beyond the switch
    Fathima N. Cassim Bawa, Mitchell A. Lazar · 2025 · Genes & Development
  61. Integrated promoter-capture Hi-C and Hi-C analysis reveals fine-tuned regulation of the 3D chromatin architecture in colorectal cancer
    Ajay Kumar Saw, Ayush Madhok, Anupam Bhattacharya, Soumyadeep Nandi, Sanjeev Galande · 2025 · Frontiers in Genetics
  62. A distal enhancer of Pparα regulates thermogenesis and mitochondrial function in brown fat
    Tingting Jiang, Duo Su, Jing Ke, Xin Dai, Maohua Wang, Yan Wang, Siyuan Zhan, Tao Zhong, Jiazhong Guo, Li Li et al. · 2025 · PLoS Genetics
  63. Alterations to Genome Organisation in Stem Cells, Their Differentiation and Associated Diseases
    Joanna M. Bridger, Rita Torres Pereira, Cristina Pina, Sabrina Tosi, Annabelle Lewis · 2022 · Results and problems in cell differentiation
  64. Maintaining transcriptional homeostasis during cell cycle
    Lucía Ramos-Alonso, Pierre Chymkowitch · 2023 · Transcription
  65. 14-3-3ζ allows for adipogenesis by modulating chromatin accessibility during the early stages of adipocyte differentiation
    Sabri A. Rial, Zhipeng You, Alexis Vivoli, Fédéric Paré, Daphné Sean, A. Alkhoury, Geneviève Lavoie, Mete Civelek, Aida Martínez-Sánchez, Philippe P. Roux et al. · 2025 · Molecular Metabolism
  66. Enhancer-driven transcriptional regulation is a potential key determinant for human visceral and subcutaneous adipocytes
    Robert Liefke, Kristin Bokelmann, Β. Michael Ghadimi, Sebastian Dango · 2018 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
  67. Insights Into the Epigenetics of Retinal Development and Diseases
    Evgenya Y. Popova, Colin James Barnstable · 2019 · Elsevier eBooks
  68. Deciphering High-Resolution 3D Chromatin Organization via Capture Hi-C
    Antonia Hauth, Rafael Galupa, Nicolas Servant, Laura Villacorta, Kai Hauschulz, Joke Gerarda van Bemmel, Agnese Loda, Édith Heard · 2022 · Journal of Visualized Experiments
  69. Structure-Function Relationships of Nuclear Lamins
    Shalaka Patil, Kundan Sengupta · 2020 · Preprints.org
  70. The integration of Tgfβ and Egfr signaling programs confers the ability to lead heterogeneous collective invasion
    Apsra Nasir, Sharon Camacho, Alec T. McIntosh, Garrett T. Graham, Raneen Rahhal, Molly E. Huysman, Fahda Alsharief, Anna Tate Riegel, Gray W. Pearson · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  71. New enhancer-promoter interactions are gained during tissue differentiation and reflect changes in E/P activity
    Tim Pollex, Adam H. Rabinowitz, Maria Cristina Gambetta, Raquel Marco-Ferreres, Rebecca R. Viales, Aleksander Jankowski, Christoph Schaub, Eileen E. M. Furlong · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  72. High Immunohistochemical Expression of SETD5 as a Candidate Pathological Factor for Dedifferentiation and Prognosis in Liposarcoma
    Makoto Abe, Naoto Kubota, Ken Yamazaki, Eisuke Miura, Kaoru Hirabayashi, Masatsugu Ishii, Hirofumi Shirakawa, Kazutaka Kikuta, Yudai Murayama, Rumi Nakagawa et al. · 2025 · Pathology International
  73. Chromatin architecture and topology in pluripotent stem cells
    Angeliki Platania, Tom Sexton · 2020 · Elsevier eBooks
  74. An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations
    Llorenç Rovirosa, Laureano Tomás-Daza, Blanca Urmeneta, Alfonso Valencia, Biola M. Javierre · 2023 · Journal of Visualized Experiments
  75. ‘Enhancing’ skeletal muscle and stem cells in three-dimensions: genome regulation of skeletal muscle in development and disease
    Matthew A. Romero, April D. Pyle · 2023 · Current Opinion in Genetics & Development
  76. Enhancer contacts during embryonic development show diverse interaction modes and modest yet significant increases upon gene activation
    Daniel M. Ibrahim · 2024 · Nature Genetics
  77. β-Adrenergic Signal and Epigenomic Regulatory Process for Adaptive Thermogenesis
    Yoshihiro Matsumura, Timothy F. Osborne, Ryo Ito, Hiroki Takahashi, Juro Sakai · 2024 · Advances in experimental medicine and biology
  78. Reorganization of H3K9me2-modified chromatin regions during mouse embryonic development
    Diana B. Fulmer, Emily J. Shields, Andrey S. Poleshko, Jonathan A. Epstein, Cheryl L. Smith · 2025 · Developmental Biology
  79. Genome-wide Methylation Dynamics and Context-dependent Gene Expression Variability in Differentiating Preadipocytes
    Binduma Yadav, Dalwinder Singh, Shrikant Subhash Mantri, Vikas Rishi · 2024 · Journal of the Endocrine Society
  80. The Autism-Related Protein CHD8 Cooperates with C/EBPβ to Regulate Adipogenesis
    Yasuyuki Kita, Yuta Katayama, Taichi Shiraishi, Takeru Oka, Tetsuya Sato, Mikita Suyama, Yasuyuki Ohkawa, Keishi Miyata, Yuichi Oike, Michiko Shirane et al. · 2018 · Cell Reports
  81. 3D chromatin organization changes modulate adipogenesis and osteogenesis
    Ruo-Han Hao, Yan Guo, Jing Guo, Yu Rong, Shi Yao, Yi-Xiao Chen, Shan‐Shan Dong, Dong‐Li Zhu, Hao Chen, Tie-Lin Yang · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  82. Mitochondrial Biogenesis in White Adipose Tissue Mediated by JMJD1A-PGC-1 Axis Limits Age-Related Metabolic Disease
    Ryo Ito, Shiyu Xie, Myagmar Tumenjargal, Yuto Sugahara, Chaoran Yang, Hiroki Takahashi, Makoto Arai, Shinichi Inoue, Aoi Uchida, Kenji Nakano et al. · 2023 · SSRN Electronic Journal
  83. 14-3-3ζ regulates adipogenesis by modulating chromatin accessibility during the early stages of adipocyte differentiation
    Sabri A. Rial, Z You, Alexis Vivoli, Daphné Sean, A. Alkhoury, Geneviève Lavoie, Mete Civelek, Aida Martínez-Sánchez, Philippe P. Roux, Thomas M. Durcan et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  84. Deciphering High-Resolution 3D Chromatin Organization via Capture Hi-C
    Antonia Hauth, Rafael Galupa, Nicolas Servant, Laura Villacorta, Kai Hauschulz, Joke Gerarda van Bemmel, Agnese Loda, Édith Heard · 2022 · Journal of Visualized Experiments
  85. Iron‐Dependent JMJD1A ‐Mediated Demethylation of H3K9me2 Regulates Gene Expression During Adipogenesis in a Spatial Genome Organization‐Dependent Manner
    Shinnosuke Masuda, Tetsuro Komatsu, Safiya Atia, Tomohiro Suzuki, Mayuko Hayashi, Atsushi Toyoda, Hiroshi Kimurâ, Takeshi Inagaki · 2025 · Genes to Cells
  86. Genomic locus of lncRNA-Gm26793 forms an inter-chromosomal interaction with Cubn to ensure proper stem cell differentiation in vitro and in vivo
    Zhiwen Liu, Xin Wan, Jiehui Chen, Yongjian Ma, Yonggao Fu, Yingying Chen, Mingzhu Wen, Yun Yang, Yun Qian, Yong Zhang et al. · 2025 · Cell Discovery
  87. Dynamic Histone Modification Patterns in Key Transcription Factor Genes During Porcine Adipogenesis
    Mehmet Onur Aksoy, Jakub Wozniak, Monika Stachowiak, Izabela Szczerbal · 2026 · Genes
  88. Epigenetic effects induced by the ectopic expression of Pax7 in 3T3-L1
    Alaa Elgaabari, Atsuko Miyawaki‐Kuwakado, Kosuke Tomimatsu, Qianmei Wu, Kosuke Tokunaga, Wakana Izumi, Takahiro Suzuki, Ryuichi Tatsumi, Mako Nakamura · 2021 · The Journal of Biochemistry
  89. Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data
    Tingting Qin, Christopher Lee, Raymond G. Cavalcante, Peter Orchard, Heming Yao, Hanrui Zhang, Shuze Wang, Snehal B. Patil, Alan P. Boyle, Maureen A. Sartor · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  90. A YY1 phosphorylation switch in brown adipose tissue orchestrates energy homeostasis.
    Zyanya Díaz-Hirashi, Tian Gao, Chiara Scaffidi, Monika Fey, Susan Murray, Audrey Low, Olga Pushkareva, Raed Rizkallah, Bart Deplancke, Francisco Verdeguer · 2021 · Research Square
  91. Super-Enhancer-Associated TMEM44-AS1 Aggravated Glioma Progression by Forming a Positive Feedback Loop With Myc
    Erbao Bian, Xueran Chen, Li Cheng, Meng Cheng, Zhigang Chen, Xiaoyu Yue, Zhengwei Zhang, Jie Chen, Libo Sun, Kebing Huang et al. · 2021 · Research Square
  92. Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution
    Laureano Tomás-Daza, Llorenç Rovirosa, Paula López-Martí, Andrea Nieto-Aliseda, François Serra, Ainoa Planas‐Riverola, Òscar Molina, Rebecca McDonald, Cédric Ghevaert, Esther Cuatrecasas et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  93. Protein arginine methyltransferase 5 (Prmt5) localizes to chromatin loop anchors and modulates expression of genes at TAD boundaries during early adipogenesis
    Sabriya A. Syed, Kristina Shqillo, Ankita Nand, Ye Zhan, Job Dekker, Anthony N. Imbalzano · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  94. Rewiring of chromatin loops in adipogenesis reveals targets for obesity and diabetes intervention
    Ionel Sandovici, Borbála Mifsud, Katherine A. Kentistou, Amy Emery, Pawan Gulati, Ayesha Banu, Niamh Campbell, Bryn S. Hardwick, Alex T. Crooks, Denise S. Fernandez‐Twinn et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  95. The integration of Tgfβ and Egfr signaling programs confers the ability to lead heterogeneous collective invasion
    Apsra Nasir, Sharon Camacho, Alec T. McIntosh, Garrett T. Graham, Raneen Rahhal, Molly E. Huysman, Fahda Alsharief, Anna Tate Riegel, Gray W. Pearson · 2023
  96. Protein arginine methyltransferase 5 (Prmt5) localizes to chromatin loop anchors and modulates expression of genes at TAD boundaries during early adipogenesis
    Sabriya A. Syed, Kristina Shqillo, Ankita Nand, Ye Zhan, Job Dekker, Anthony N. Imbalzano · 2023
  97. CTCF depletion decouples enhancer-mediated gene activation from chromatin hub formation during cellular differentiation
    Magdalena A. Karpińska, Yi Zhu, Zahra Fakhraei Ghazvini, Shyam Ramasamy, Mariano Barbieri, T. B. Ngoc Cao, Natalie Varahram, Abrar Aljahani, Michael Lidschreiber, Argyris Papantonis et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  98. Hi-C sequencing data from cortex of laboratory rats
    Panjun Kim, Rachel R. Ward, Burt M. Sharp, Robert W. Williams, Hao Chen · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  99. The impact of endogenous retroviruses on nuclear organization and gene expression
    Ramya Raviram, Pedro P. Rocha, Vincent Mingyi Luo, Emily Swanzey, Emily R. Miraldi, Edward B. Chuong, Cédric Feschotte, Richard Bonneau, Jane A. Skok · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  100. Organizing Principles for the Spatial Folding of Chromosomes
    Nataša Josipović, Argyris Papantonis · 2019 · Elsevier eBooks