Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation

Siersbæk, Rasmus, Madsen, Jesper Grud Skat, Javierre, Biola Maria, Nielsen, Ronni, Bagge, Emilie Kristine, Cairns, Jonathan, Wingett, Steven William, Traynor, Sofie +3 more·2017·Molecular Cell

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  4. Peer Review #1 of "Integrated lipidomics and RNA sequencing analysis reveal novel changes during 3T3-L1 cell adipogenesis (v0.1)"
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  10. Protein arginine methyltransferase 5 (Prmt5) localizes to chromatin loop anchors and modulates expression of genes at TAD boundaries during early adipogenesis
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  11. WGBS of Differentiating Adipocytes Reveals Variations in DMRs and Context-Dependent Gene Expression
    Binduma Yadav, Dalwinder Singh, Shrikant Subhash Mantri, Vikas Rishi · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  12. Additional file 2 of Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data
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  15. HDAC3 prevents enhancer hyperactivation to enable developmental transitions
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  17. Myogenic enhancer snatching promotes adipogenic differentiation during epigenetic reprogramming mediated by lineage-specific transcription factors
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  19. Additional file 1 of Local euchromatin enrichment in lamina-associated domains anticipates their repositioning in the adipogenic lineage
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  20. Additional file 4 of Cellular reprogramming is driven by widespread rewiring of promoter-enhancer interactions
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  21. Additional file 2 of Cellular reprogramming is driven by widespread rewiring of promoter-enhancer interactions
    Wang, Miao, Bing He, Yueling Hao, Divyaa Srinivasan, Jatin Shrinet, Peter Fraser · 2024 · Figshare
  22. Additional file 3 of Local euchromatin enrichment in lamina-associated domains anticipates their repositioning in the adipogenic lineage
    Julia Madsen‐Østerbye, Mohamed Abdelhalim, Marie-Odile Baudement, Philippe Collas · 2022 · Figshare
  23. Additional file 3 of Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data
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  24. Additional file 3 of Super-enhancer-associated TMEM44-AS1 aggravated glioma progression by forming a positive feedback loop with Myc
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  25. Additional file 7 of Super-enhancer-associated TMEM44-AS1 aggravated glioma progression by forming a positive feedback loop with Myc
    Bian, Erbao, Chen, Xueran, Li Cheng, Cheng, Meng, Zhigang Chen, Xiaoyu Yue, Zhang, Zhengwei, Chen, Jie, Sun, Libo, Kebing Huang et al. · 2021 · Figshare
  26. Additional file 5 of Super-enhancer-associated TMEM44-AS1 aggravated glioma progression by forming a positive feedback loop with Myc
    Bian, Erbao, Chen, Xueran, Li Cheng, Cheng, Meng, Chen, Zhigang, Xiaoyu Yue, Zhang, Zhengwei, Chen, Jie, Sun, Libo, Kebing Huang et al. · 2021 · Figshare
  27. Additional file 2 of Dynamic changes in chromatin accessibility, altered adipogenic gene expression, and total versus de novo fatty acid synthesis in subcutaneous adipose stem cells of normal-weight polycystic ovary syndrome (PCOS) women during adipogenesis: evidence of cellular programming
    Leung, Karen L., Smriti Sanchita, Catherine T. Pham, Brett A. Davis, Mariam Okhovat, Ding, Xiangming, Phillip A. Dumesic, Grogan, Tristan R., Kevin J. Williams, Marco Morselli et al. · 2020 · Figshare
  28. Additional file 1 of Mechanisms of enhancer action: the known and the unknown
    Panigrahi, Anil, Bert W. O’Malley · 2021 · Figshare
  29. Additional file 1 of Cellular reprogramming is driven by widespread rewiring of promoter-enhancer interactions
    Wang, Miao, Bing He, Hao, Yueling, Divyaa Srinivasan, Jatin Shrinet, Peter Fraser · 2024 · Figshare
  30. Additional file 1 of Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data
    Qin, Tingting, Lee, Christopher, Shiting Li, Raymond G. Cavalcante, Orchard, Peter, Yao, Heming, Zhang, Hanrui, Shuze Wang, Patil, Snehal, Alan P. Boyle et al. · 2022 · Figshare
  31. Additional file 1 of Super-enhancer-associated TMEM44-AS1 aggravated glioma progression by forming a positive feedback loop with Myc
    Bian, Erbao, Chen, Xueran, Li Cheng, Cheng, Meng, Zhigang Chen, Xiaoyu Yue, Zhang, Zhengwei, Chen, Jie, Sun, Libo, Kebing Huang et al. · 2021 · Figshare
  32. Additional file 3 of Cellular reprogramming is driven by widespread rewiring of promoter-enhancer interactions
    Wang, Miao, Bing He, Yueling Hao, Divyaa Srinivasan, Jatin Shrinet, Peter Fraser · 2024 · Figshare
  33. Additional file 2 of Super-enhancer-associated TMEM44-AS1 aggravated glioma progression by forming a positive feedback loop with Myc
    Bian, Erbao, Chen, Xueran, Li Cheng, Cheng, Meng, Zhigang Chen, Xiaoyu Yue, Zhang, Zhengwei, Chen, Jie, Sun, Libo, Kebing Huang et al. · 2021 · Figshare
  34. Additional file 6 of Super-enhancer-associated TMEM44-AS1 aggravated glioma progression by forming a positive feedback loop with Myc
    Bian, Erbao, Chen, Xueran, Li Cheng, Cheng, Meng, Chen, Zhigang, Xiaoyu Yue, Zhang, Zhengwei, Chen, Jie, Sun, Libo, Kebing Huang et al. · 2021 · Figshare
  35. Additional file 4 of Super-enhancer-associated TMEM44-AS1 aggravated glioma progression by forming a positive feedback loop with Myc
    Bian, Erbao, Chen, Xueran, Li Cheng, Cheng, Meng, Chen, Zhigang, Xiaoyu Yue, Zhang, Zhengwei, Chen, Jie, Sun, Libo, Kebing Huang et al. · 2021 · Figshare
  36. Additional file 1 of Dynamic changes in chromatin accessibility, altered adipogenic gene expression, and total versus de novo fatty acid synthesis in subcutaneous adipose stem cells of normal-weight polycystic ovary syndrome (PCOS) women during adipogenesis: evidence of cellular programming
    Leung, Karen L., Smriti Sanchita, Catherine T. Pham, Brett A. Davis, Mariam Okhovat, Ding, Xiangming, Phillip A. Dumesic, Grogan, Tristan R., Kevin J. Williams, Marco Morselli et al. · 2020 · Figshare
  37. Additional file 1 of Single-nuclei chromatin profiling of ventral midbrain reveals cell identity transcription factors and cell-type-specific gene regulatory variation
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  39. The functional and spatial organization of chromatin during Thymocyte development
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  46. A cardiac-related, promoter-proximal, regulatory element shapes chromatin and JAG1 transcription
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  47. Glucocorticoid signalling exerts distinct lineage-permissive and dose-dependent disruptive actions during human osteoblast differentiation
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