A strategy to discover genes that carry multi-allelic or mono-allelic risk for common diseases: A cohort allelic sums test (CAST)

Morgenthaler, Stephan, Thilly, William G.·2007·Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis

Cited by (508)

Items 401–500 of 508

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    Sinan Erten, Marzieh Ayati, Yu Liu, Mark R. Chance, Mehmet Koyutürk · 2012 · ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB)
  5. Analysis of Genetic Analysis Workshop 18 data with gene-based penalized regression
    Kristin L. Ayers, Heather Jane Cordell · 2014 · BMC Proceedings
  6. Assessing multivariate gene-metabolome associations with rare variants using Bayesian reduced rank
    Matti Pirinen, Antti‐Pekka Sarin, Jussi Gillberg, Johannes Kettunen, Samuli Ripatti, Samuel Kaski A · 2014
  7. Next-generation sequencing for complex disorders
    Ferrán Casals, Elena Bosch · 2015 · Cambridge University Press eBooks
  8. Weighted Transmission Disequilibrium Test for Family Trio Association Design
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  9. Estimation and hypothesis testing with additive kernel machines for high-dimensional data
    Clark, Jennifer · 2019 · Carolina Digital Repository (University of North Carolina at Chapel Hill)
  10. Rare variants confer shared susceptibility to gastrointestinal tract cancer risk
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  11. Nonparametric Bayes multiresolution testing for high-dimensional rare events
    Jyotishka Datta, Sayantan Banerjee, David B. Dunson · 2024 · Journal of nonparametric statistics
  12. A computational method for detecting the associations between multiple loci and phenotypes
    Zhongmeng Zhao, Jiali Huang, Mingzhe Xu, Ruo-Yu Liu, Siyu He, Xuanping Zhang, Jiayin Wang · 2018 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
  13. A nonparametric test for association with multiple loci in the retrospective case-control study
    Chan Wang, Shu-fang Deng, Leiming Sun, Liming Li, Yue‐Qing Hu · 2019 · Statistical Methods in Medical Research
  14. Methods for Association Studies
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  15. Grid-based Gaussian process models for longitudinal genetic data
    Wonil Chung · 2022 · Communications for Statistical Applications and Methods
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  17. A Generalized Similarity U Test for Multivariate Analysis of Sequencing Data
    Changshuai Wei, Qing Ling Lu · 2015 · arXiv (Cornell University)
  18. Computational Pipelines and Workflows in Bioinformatics
    Yosvany López, Piotr J. Kamola, Ronesh Sharma, Daichi Shigemizu, Tatsuhiko Tsunoda, Alok K. Sharma · 2018 · Elsevier eBooks
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    Alba Sanchis Juan · 2019
  20. Quantitative Genetic Scoring, or how to put a number on an arbitrary genetic region
    Gido Schoenmacker, Priscilla Vlaming, Jonatan Pallesen, MY Pikulina, AH Ghamarian, Ditte Demontis, Anders Dupont Børglum, Tessel E. Galesloot, Geert Poelmans, Barbara Franke et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  21. Spatial Multi-Omics Connect SHROOM3 and COL18A1 in Chronic Kidney Disease
    Pukhraj Singh Gaheer, Nikhil Uppal, Amy Paul, Pedrum Mohammadi‐Shemirani, Nicolas Perrot, Guillaume Paré, Darren J. Bridgewater, Matthew Bruce Lanktree · 2024 · medRxiv
  22. Meta-SAIGE: Scalable and Accurate Meta-Analysis for Rare Variants
    Eunjae Park, Kisung Nam, Seokho Jeong, Karl Keat, Dokyoon Kim, Vikas Bansal, Wei Zhou, Seunggeun Lee · 2024 · medRxiv
  23. Leveraging functional annotations to map rare variants associated with Alzheimer’s disease with gruyere
    Anjali Das, Chirag M. Lakhani, Chloé Terwagne, Jui-Shan T Lin, Tatsuhiko Naito, Towfique Raj, David A. Knowles · 2024 · medRxiv
  24. Kernel machine methods for analysis of genomic data from different sources
    Ni Zhao · 2019 · Carolina Digital Repository (University of North Carolina at Chapel Hill)
  25. Mixture and Mixed Models Analysis for Genetic Variants
    Haimao Zhan · 2013 · eScholarship (California Digital Library)
  26. The genetic associations of rhegmatogenous retinal detachment and ectopia lentis
    Aman Chandra · 2014 · UCL Discovery (University College London)
  27. Delineating Signals from Association Studies
    Benjamin F. Voight · 2010 · Elsevier eBooks
  28. Identification and Characterization of Rare Variants in Cholinergic Nicotinic Receptor Genes and their Contribution to Substance Dependence
    Gabriel Emanuel Haller · 2013 · Open Scholarship Institutional Repository (Washington University in St. Louis)
  29. Developing Computational Methods for Studying nonmodel Organism Genetics and Human Disease with Next-Generation Sequencing Data
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  30. Biological role and disease impact of copy number variation in complex disease
    Joseph Glessner · 2014 · ScholarlyCommons (University of Pennsylvania)
  31. Collapsing Approaches for the Association Analysis of Rare Variants
    Jennifer L. Asimit, Andrew P. Morris · 2015 · Springer eBooks
  32. A Robust GWSS Method to Simultaneously Detect Rare and Common Variants for Complex Disease
    Chung-Feng Kao, Jia‐Rou Liu, Hung Hung, Po‐Hsiu Kuo · 2015 · PLoS ONE
  33. Genomic Applications in Pharmacogenomics
    Rehan Qayyum · 2014 · Springer eBooks
  34. Identification of disease-related nsSNPs via the integration of protein sequence features and domain-domain interaction data
    Rui Jiang, Mingxin Gan, Jiaxin Wu · 2012 · International Journal of Computational Biology and Drug Design
  35. Quantitative Genetic Methods to Dissect Heterogeneity in Complex Traits
    Tim B. Bigdeli · 2012 · VCU Scholars Compass (Virginia Commonwealth University)
  36. A Mini Review for Aggregating Analyses for Genome-Wide Association Studies (GWAS)
    Caiyan Li · 2015 · Biometrics & Biostatistics International Journal
  37. METHOD Open Access
    Lasse Maretty, Jonas A. Sibbesen, Anders Krogh · 2014
  38. A Biologically Informed Method for Detecting Associations with Rare Variants
    Carrie C Buchanan, John R. Wallace, Alex Frase, Eric S. Torstenson, Sarah A. Pendergrass, Marylyn DeRiggi Ritchie · 2012 · Lecture notes in computer science
  39. Two Topics in Association Analysis of DNA Sequencing Data: Population Structure and Multivariate Traits
    Yiwei Zhang · 2013 · University of Minnesota Digital Conservancy (University of Minnesota)
  40. Combining exome and gene expression datasets in one graphical model of disease to empower the discovery of disease mechanisms
    Aziz M. Mezlini, Fabio Fuligni, Adam Shlien, Anna Goldenberg · 2015 · arXiv (Cornell University)
  41. Association Analysis of Rare Variants in Sequencing Studies
    Zheng-Zheng Tang · 2019 · Carolina Digital Repository (University of North Carolina at Chapel Hill)
  42. Quantitative methods for evaluating association between multiple rare genetic variants and complex human traits
    Andrea Byrnes · 2019 · Carolina Digital Repository (University of North Carolina at Chapel Hill)
  43. Statistical Analysis of GWAS
    Florian Frommlet, Małgorzata Bogdan, David Ramsey · 2016 · Computational biology
  44. Block-based association tests for rare variants using Kullback–Leibler divergence
    Degang Zhu, Yue‐Qing Hu, Shili Lin · 2016 · Journal of Human Genetics
  45. The statistical analysis of genetic sequencing and rare variant association studies
    Eugene Urrutia · 2019 · Carolina Digital Repository (University of North Carolina at Chapel Hill)
  46. Methods for genome interpretation: causal gene discovery and personal phenotype prediction
    Yunching Chen · 2014
  47. UTILIZING RARE AND X-LINKED VARIANTS FOR INFERENCE OF POPULATION SIZE HISTORY AND ASSOCIATION STUDIES OF COMPLEX DISEASES
    Gao, Feng · 2017 · eCommons (Cornell University)
  48. An adaptive strategy for association analysis of common or rare variants using entropy theory
    Yumei Li, Chao Xu, Yang Xiang, Cheng Peng, Hong‐Wen Deng · 2017 · Journal of Human Genetics
  49. Statistical Analysis for Next-Generation Sequencing data in Family-based designs
    최성경 · 2016 · Seoul National University Open Repository (Seoul National University)
  50. DiGeST: Distributed Computing for Scalable Gene and Variant Ranking with Hadoop/Spark
    Yann‐Aël Le Borgne, Raphaël Helaers, Tom Lenaerts, Marc Joel Abramowicz, Guillaume Smits, Gianluca Bontempi · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  51. From Hype to Hope: Genome-Wide Association Studies in Soybean
    Chengsong Zhu, Babu Valliyodan, Yan Li, Junyi Gai, Henry T. Nguyen · 2017 · Compendium of plant genomes
  52. Exploiting whole genome sequence variants in cattle breeding : Unraveling the distribution of genetic variants and role of rare variants in genomic evaluation
    Qianqian Zhang · 2017
  53. Human genomics of acute liver failure due to hepatitis B virus infection: an exome sequencing study in liver transplant recipients
    Samira Asgari, Nimisha Chaturvedi, Petar Šćepanović, Christian Hammer, Nasser Semmo, Emiliano Giostra, Beat Müllhaupt, Peter Angus, Alexander J. V. Thompson, Darius Moradpour et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  54. Novel Methods for Family-Based Genetic Studies
    Qi Yan · 2018 · Methods in molecular biology
  55. Statistical Methods for Analyzing Multivariate Phenotypes and Detecting Rare Variant Associations
    Huanhuan Zhu · 2018
  56. STATISTICAL METHODS FOR DETECTING CAUSAL RARE VARIANTS AND ANALYZING MULTIPLE PHENOTYPES
    Xinlan Yang · 2018
  57. Joint Analysis for Multiple Traits
    Zhenchuan Wang · 2018
  58. Association Analysis of Common and Rare SNVs using Adaptive Fisher Method to Detect Dense and Sparse Signals
    Xiaoyu Cai, Lo‐Bin Chang, Chi Wook Song · 2018 · arXiv (Cornell University)
  59. Deep sequencing across germline genome-wide association study signals relating to breast cancer events in women receiving aromatase inhibitors for adjuvant therapy of early breast cancer
    James N. Ingle, Krishna R. Kalari, Yukihide Momozawa, Michiaki Kubo, Yoichi Furukawa, Lois E. Shepherd, Matthew J. Ellis, Paul Edward Goss, Poulami Barman, Erin E. Carlson et al. · 2019 · Pharmacogenetics and Genomics
  60. A Powerful Retrospective Multiple Variant Association Test for Quantitative Traits by Borrowing Strength from Complex Genotypic Correlations
    Xiaowei Wu · 2019 · ICSA book series in statistics
  61. An Artificial Fish Swarm Algorithm for Identifying Associations between Multiple Variants and Multiple Phenotypes
    Ruoyu Liu, Xin Lai, Xiao Xiao, Xuanping Zhang, Xiaoyan Zhu, Jiayin Wang · 2019 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
  62. Statistical Method Development for Rare Variant Association Tests in Family-based Designs
    Longfei Wang · 2019
  63. Bayes Factor Approaches for Region-Based Analysis of Rare Variants from Next Generation Sequencing Studies
    Jingxiong Xu · 2019 · TSpace (University of Toronto)
  64. [An improved association analysis pipeline for tumor susceptibility variant in haplotype amplification area].
    Yu Geng, Rongrong Yang, Jing Zhang · 2020 · PubMed Central
  65. Rare Atg7 Genetic Variants Predispose to Severe Fatty Liver Disease
    Guido Baselli, Serena Pelusi, Ester Ciociola, Paola Dongiovanni, Marco Maggioni, Cristiana Bianco, Federica Tavaglione, Annalisa Cespiati, Rosellina Margherita Mancina, Francesco Malvestiti et al. · 2021 · SSRN Electronic Journal
  66. Bayesian mixture model for clustering rare-variant effects in human genetic studies
    Guhan Ram Venkataraman, Yosuke Tanigawa, Matti Pirinen, Manuel A. Rivas · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  67. Leveraging Summary Statistics and Integrative Analysis for Prediction and Inference in Genome-Wide Association Studies
    Jack W. Pattee · 2020 · University of Minnesota Digital Conservancy (University of Minnesota)
  68. Grid-based Gaussian process models for longitudinal genetic data
    Wonil Chung · 2022 · Communications for Statistical Applications and Methods
  69. References
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  70. A robust association test with multiple genetic variants and covariates
    Jen‐Yu Lee, Pao‐Sheng Shen, Kuang‐Fu Cheng · 2022 · Statistical Applications in Genetics and Molecular Biology
  71. Genetics in parkinson’s disease: From better disease understanding to machine learning based precision medicine
    Mohamed Aborageh, Peter Michael Krawitz, Holger Fröhlich · 2022 · Frontiers in Molecular Medicine
  72. A fast and efficient approach for gene-based association studies of ordinal phenotypes
    Nanxing Li, Lili Chen, Yajing Zhou, Qianran Wei · 2023 · Statistical Applications in Genetics and Molecular Biology
  73. Ravages: An R package for the simulation and analysis of rare variants in multicategory phenotypes
    Ozvan Bocher, Gaëlle Marenne, Emmanuelle Génin, Hervé Perdry · 2023 · Genetic Epidemiology
  74. Peer Review #1 of "Weighted multiple testing procedures in genome-wide association studies (v0.1)"
    2023 · PeerJ
  75. Peer Review #1 of "Weighted multiple testing procedures in genome-wide association studies (v0.2)"
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  76. Peer Review #2 of "Weighted multiple testing procedures in genome-wide association studies (v0.1)"
    2023 · PeerJ
  77. Cauchy combination methods for the detection of gene–environment interactions for rare variants related to quantitative phenotypes
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  78. Method of data generation for affected grandparent-grandchild pairs and its applications
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  79. Association detection between multiple traits and rare variants based on family data via a nonparametric method
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  80. Structured Compression of Genetic Information and Genome‐Wide Association Study by Additive Models
    Florent Guinot, Marie Szafranski, Christophe Ambroise · 2023
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    Diogo Maciel Duarte Mota · 2024
  82. Additional file 2 of A gene based combination test using GWAS summary data
    Jianjun Zhang, Xiaoyu Liang, Samantha Gonzales, Jianguo Liu, Xiaoyi Gao, Xuexia Wang · 2023 · Figshare
  83. Variant Selection and Aggregation of Genetic Association Studies in Precision Medicine
    Jianchang Hu, Shiying Wang, Heping Zhang D · 2024 · ICSA book series in statistics
  84. Métodos eficientes para colapsagem e seleção de SNPs raros em dados familiares
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  85. Isolated prolapse of the posterior mitral valve leaflet: phenotypic refinement, heritability and genetic etiology
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  86. Advances in Computational Pipelines and Workflows in Bioinformatics
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  87. O sequenciamento de nova geração no estudo de modelos de herança na perda auditiva não-sindrômica
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  88. Pathway-based genetic association analysis for overdispersed count data
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  89. Archipelago method for variant set association test statistics
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  90. Computationally efficient whole-genome signal region detection for quantitative and binary traits
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  91. Winner’s curse in rare variant analysis: effect size estimation bias depends on effect direction and the association method used
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  92. Rare variant association analysis in rheumatoid arthritis using sequence kernel association testing: A genome-wide study
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  99. Archipelago Method for Variant Set Association Test Statistics
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  100. A Transformation‐Based Direction Combination Association Test for GWAS Summary Statistics
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