Cell-Type-Based Analysis of MicroRNA Profiles in the Mouse Brain

He, Miao, Liu, Yu, Wang, Xiaowo, Zhang, Michael Q., Hannon, Gregory J., Huang, Z. Josh·2012·Neuron
DOI 10.1016/j.neuron.2011.11.010

Cited by (279)

Items 201–279 of 279

  1. Freedom of expression: cell‐type‐specific gene profiling
    Leo Otsuki, Seth W. Cheetham, Andrea H. Brand · 2014 · Wiley Interdisciplinary Reviews Developmental Biology
  2. MiR-128, a key regulator of oncogenic properties
    Deqiang Huang, P. Guo, Nonghua Lv, L. -Y. Luo · 2015 · Molecular Biology
  3. Neurodegenerative disease-associated microRNAs acting as signaling molecules modulate CNS neuron structure and viability
    Kumbol, Victor, Ivanov, Andranik, McGurran, Hugo, Schüler, Jutta, Zhai, Yuanyuan, Ludwik, Katarzyna, Hinkelmann, Lukas, Brehm, Mariam, Krüger, Christina, Küchler, Judit et al. · 2025 · Cell Communication and Signaling
  4. Is there a role for microRNAs in epilepsy diagnostics?
    Sebastian Bauer, Vanessa Schütz, Adam Strzelczyk, Felix Rosenow · 2020 · Expert Review of Molecular Diagnostics
  5. Mime-seq 2.0: a method to sequence microRNAs from specific mouse cell types
    Ariane Mandlbauer, Qiong Sun, Niko P. Popitsch, Tanja A. Schwickert, Miroslava Spanova, Jingkui Wang, Stefan Ludwig Ameres, Meinrad Busslinger, Luisa Cochella · 2024 · The EMBO Journal
  6. The lemur tail kinase family in neuronal function and disfunction in neurodegenerative diseases
    Angelique Larose, Christopher C.J. Miller, Gábor M. Mórotz · 2024 · Cellular and Molecular Life Sciences
  7. Construction of Polymeric DNA Network and Application for Cell Manipulation
    Lele Chang, Rui Zhang, Jing Wang, Chi Yao, Dayong Yang · 2023 · Chinese Journal of Chemistry
  8. Advances in RNA therapeutics for modulation of ‘undruggable’ targets
    Emily Martinsen, Tasmia Jinnurine, Saranya Subramani, Marie Rogne · 2024 · Progress in molecular biology and translational science
  9. Patient-derived neuron model: Capturing age-dependent adult-onset degenerative pathology in Huntington’s disease
    Young Mi Oh, Seong Won Lee · 2024 · Molecules and Cells
  10. DMF-DM-seq: Digital-Microfluidics Enabled Dual-Modality Sequencing of Single-Cell mRNA and microRNA with High Integration, Sensitivity, and Automation
    Yingwen Chen, Xuanqun Wang, Na Xing, Yingkun Zhang, Linfeng Cai, Jia Tao Song, Chaoyong James Yang · 2024 · Analytical Chemistry
  11. A cell-based probabilistic approach unveils the concerted action of miRNAs
    Shelly Mahlab-Aviv, Nathan Linial, Michal Linial · 2019 · PLoS Computational Biology
  12. miR-128 как ключевой регулятор онкогенности
    Deqiang Huang, P. Guo, Nonghua Lv, L.-Y. Luo · 2015 · Molecular Biology
  13. Site-blocking antisense oligonucleotides as a mechanism to fine-tune MeCP2 expression
    Amanda M. Vanderplow, Grace E. Dodis, Yewon Rhee, Jakub Cikowski, Sonia Gonzalez, Mackenzie L. Smith, Rocco G. Gogliotti · 2024 · RNA
  14. Circulating microRNAs and isomiRs as biomarkers for the initial insult and epileptogenesis in four experimental epilepsy models: The EPITARGET study
    Erwin Alexander van Vliet, Mirte Scheper, James Dominic Mills, Noora Puhakka, Kinga Szydłowska, Manuela Ferracin, Francesca Lovisari, Marie Soukupovà, Silvia Zucchini, Prashant Kumar Srivastava et al. · 2024 · Epilepsia
  15. Neuron type-specific translatomes in dorsal hippocampus during early memory consolidation
    Mauricio Martins Oliveira, Olivia Mosto, Robert Carney, Wendy J. Liu, Maggie Mamcarz, Emmanuel Makinde, Emily H. Lu, Karen San Agustin Ruiz, Carson C. Schultz, Catherine Leckie et al. · 2026 · Nature Communications
  16. Agomir-331 Suppresses Reactive Gliosis and Neuroinflammation after Traumatic Brain Injury
    Jin‐Xing Wang, Xiao Xiao, Xuan‐Cheng He, Bao‐Dong He, Chang‐Mei Liu, Zhao‐Qian Teng · 2023 · Cells
  17. Comprehensive Identification of mRNA Polyadenylation Sites by PAPERCLIP
    Hun‐Way Hwang, Robert B. Darnell · 2017 · Methods in molecular biology
  18. 2R,4R-APDC, a Metabotropic Glutamate Receptor Agonist, Reduced Neuronal Apoptosis by Upregulating MicroRNA-128 in a Rat Model After Seizures
    Ya-bo Feng, Youting Lin, Yuxiang Han, Yuejiu Pang, Jingjing Xu, Yuan Xue, Hong Yao · 2018 · Neurochemical Research
  19. MicroRNA-Based Separation of Cortico-Fugal Projection Neuron-Like Cells Derived From Embryonic Stem Cells
    Tadashi Sunohara, Asuka Morizane, Satoshi Matsuura, Susumu Miyamoto, Hirohide Saito, Jun B. Takahashi · 2019 · Frontiers in Neuroscience
  20. R3HDM1 haploinsufficiency is associated with mild intellectual disability
    Daisuke Fukushi, Mie Inaba, Kimiko Katoh, Y. Suzuki, Yasushi Enokido, Noriko Nomura, Yoshihito Tokita, Shin Hayashi, Seiji Mizuno, Kenichiro Yamada et al. · 2021 · American Journal of Medical Genetics Part A
  21. Spinocerebellar ataxia: miRNAs expose biological pathways underlying pervasive Purkinje cell degeneration
    Rogier van der Stijl, Sebo Withoff, Dineke S. Verbeek · 2017 · Neurobiology of Disease
  22. Vector-Mediated Delivery of Transgenes and RNA Interference-Based Gene Silencing Sequences to Astrocytes for Disease Management: Advances and Prospectives
    Deepika Yadav, Rishabha Malviya · 2023 · Current Gene Therapy
  23. New Players in the Neuroendocrine System
    Yongping Wang, Edward A. Mead, Austin P. Thekkumthala, Andrzej Zbigniew Pietrzykowski · 2016 · Wiley eBooks
  24. Shared and distinct microRNA profiles between HT22, N2A and SH-SY5Y cell lines and primary mouse hippocampal neurons
    Murphy, Ronan, Villegas-Salmerón, Javier, Sanz-Rodriguez, Amaya, Engel, Tobias, Mooney, Catherine, Henshall, David C., Jimenez-Mateos, Eva M. · 2025 · PLOS One
  25. Aberrant MicroRNA-124 expression and methylation in the dorsolateral prefrontal cortex of depressed subjects
    Yu Funahashi, Shinichiro Ochi, Bhaskar Roy, Yogesh Dwivedi · 2025 · Journal of Psychiatric Research
  26. miRNA in Neuronal Networks Maturation and Plasticity
    Debora Napoli, Tommaso Pizzorusso · 2017 · Elsevier eBooks
  27. GABAergic miR-34a regulates Dorsal Raphè inhibitory transmission in response to aversive, but not rewarding, stimuli
    Donald Ielpo, Serafina Manila Guzzo, Giovanni Francesco Porcheddu, Maria Teresa Viscomi, Clarissa Catale, Ingrid Reverte, Simona Cabib, Carlo Cifani, Gabriella Antonucci, Rossella Ventura et al. · 2023 · Proceedings of the National Academy of Sciences
  28. Potential Disease‐Modifying Effects of Ganglioside GM1 Pulse Treatment on Spinocerebellar Ataxia Type 3, a Parallel‐Group, Double‐Blind, Randomized, Controlled Trial
    Y. Chen, Hai‐Yan Tian, Qing‐Yong Zhu, Rui Zhang, Dongxiao Liang, Jiu-Qi Wang, Renyi Feng, Chi Qin, Mingming Ma, Hong Feng Jiang et al. · 2024 · Movement Disorders
  29. MicroRNA‐138‐5p suppresses excitatory synaptic strength at the cerebellar input layer
    Delvendahl, Igor, Daswani, Reetu, Winterer, Jochen, Germain, Pierre‐Luc, Uhr, Nora Maria, Schratt, Gerhard, Müller, Martin · 2025 · The Journal of Physiology
  30. Genome-wide and cell-type-selective profiling of in vivo small noncoding RNA:target RNA interactions by chimeric RNA sequencing
    Xinbei Li, William T. Mills, Daniel S. Jin, Mollie K. Meffert · 2024 · Cell Reports Methods
  31. Keys for microRNA expression profiling of single rat hypothalamic nuclei and multiplex sequencing strategies
    Anne Baroin‐Tourancheau, Xavier Benigni, C. Benoit, Soraya Doubi-Kadmiri, Claire‐Marie Vacher, Mohammed Taouis, Lahouari Amar · 2013 · Experimental Physiology
  32. miRNA Tagging and Affinity-purification (miRAP)
    Miao He · 2012 · BIO-PROTOCOL
  33. A synthetic circular RNA targeting miR-340-5p promotes optic nerve regeneration and retinal ganglion cell survival following axotomy
    Matthew A Hintermayer, Elizabeth M.-L. Hua, Mohammed Noor, Isabel Rambaldi, Alyson E. Fournier · 2025 · Experimental Neurology
  34. Epilepsy Treatment through Genetic Intervention of GABAergic Interneurons: Promises and Challenges
    Oleg V. Podgorny, Elena O. Petukhova, Vsevolod Vadimovich Belousov · 2025 · ACS Chemical Neuroscience
  35. Distinct Argonaute2-associated small RNA profiles in microglia and neurons drive cell-specific responses in a mouse model of temporal lobe epilepsy
    Leticia Villalba‐Benito, Justine Mathoux, Theresa Auer, Kaushik Narasimhan, Ruth Colbert, James R. Reynolds, Elizabeth Brindley, Aasia Batool, Thomas D. M. Hill, Mairéad Diviney et al. · 2026 · Neurobiology of Disease
  36. The Role of MicroRNAs in Stress-Induced Psychopathologies
    Orna Issler, Alon Chen · 2017 · Elsevier eBooks
  37. miRNA-mediated inhibition of an actomyosin network in hippocampal pyramidal neurons restricts sociability in adult male mice
    Ramanathan Narayanan, Brunno Rocha Levone, Jochen Winterer, Prakruti Nanda, Alexander Müller, Thomas Lobriglio, Roberto Fiore, Pierre‐Luc Germain, Marija Mihailovich, Giuseppe Testa et al. · 2024 · Cell Reports
  38. Cell type-specific transcriptomic analysis by thiouracil tagging in zebrafish
    Timothy Erickson, Teresa A. Nicolson · 2016 · Methods in cell biology
  39. Optimization of production and transgene expression of a retrogradely transported pseudotyped lentiviral vector
    Marcus Lockowandt, Dorothee M. Günther, Luís Quintino, Ludivine S. Breger, Christina Isaksson, Cecilia Lundberg · 2020 · Journal of Neuroscience Methods
  40. Striatal neuronal models of Huntington's disease via direct conversion: Modeling age-dependent disease phenotypes
    Young Mi Oh, Seong Won Lee, Andrew S.J. Yoo · 2024 · Elsevier eBooks
  41. Gene Therapy for Neurological Disorders
    Rishabha Malviya, Arun Kumar Singh, Priyanshi Goyal, Sonali Sundram · 2024 · Apple Academic Press eBooks
  42. Dynamic regulation of cortical interneuron wiring
    Claudia Rosés-Novella, Clémence Bernard · 2025 · Current Opinion in Neurobiology
  43. miR-146a is a pleiotropic regulator of motor neuron degeneration
    Dylan A. Galloway, Hunter L. Patterson, Mariah L. Hoye, Tao Shen, Mark Shabsovich, Kathleen M. Schoch, Cindy V. Ly, Jonathan S. Mill · 2026 · Proceedings of the National Academy of Sciences
  44. Genetic inactivation of Translin/Trax RNase disrupts miRNAs, hippocampal synaptic plasticity, and memory
    Mahesh Shivarama Shetty, Junko Kasuya, Xiuping Fu, Marisol Lauffer, Satya Murthy Tadinada, Tania Chatterjee Chowdhury, Zeru J. Peterson, Knute D. Carter, Jay M. Baraban, Ted G. Abel · 2026 · iScience
  45. miR155, triplicated in Down syndrome, regulates the development of neural stem cells and GABAergic interneurons in Alzheimer's disease mouse and human iPSC models
    Xiaodong Zhu, Jean‐Vianney Haure‐Mirande, Mesude Bicak, Pengfei Dong, Ilya Kruglikov, Aiqun Li, Aisha Al‐subaie, Valentina Fossati, Scott Noggle, Sam Gandy et al. · 2026 · Alzheimer s & Dementia
  46. Transcriptional Profiling of Identified Circuit Elements in Invertebrates
    Marta Morey · 2017 · Springer eBooks
  47. Resolving CNS mRNA Heterogeneity: Examining mRNA Alternative Polyadenylation at a Cell-Type-Specific Level
    Martine Therrien, Myriam Heiman · 2017 · Neuron
  48. miR-644a is a tumor cell-intrinsic mediator of sex bias in glioblastoma
    Ellen S. Hong, Sabrina Z. Wang, András K. Ponti, Nicole Hajdari, Juyeun Lee, Erin E. Mulkearns-Hubert, Josephine Volovetz, Kristen E. Kay, Justin Durla Lathia, Andrew Dhawan · 2024 · Neuro-Oncology Advances
  49. A personal journey on cracking the genomic codes
    Michael Q. Zhang · 2021 · Quantitative Biology
  50. Biomarkers in Gynecologic Tumors
    Selim Afşar · 2022 · BENTHAM SCIENCE PUBLISHERS eBooks
  51. Human brain microRNAs exhibit cell-type specificity and age dependence
    Dubnov, Serafima, Laski, Lihen, Zchut, Ido, Avidan, Ofek, Bennett, Estelle R., Greenberg, David S., Turjeman, Adi, Nitzan, Mor, Paldor, Iddo, Soreq, Hermona · 2026
  52. microRNA and Neurodegenerative Diseases
    Josephine Malmevik, Malin Åkerblom, Johan Jakobsson · 2013 · Wiley eBooks
  53. Tuning of Neuronal Excitation by a Brain Specific Microrna MIR-128: From Targets to Behavior
    Chan Lek Tan · 2025 · Digital Commons - RU (Rockefeller University)
  54. RNAi-mediated knockdown of mouse melanocortin-4 receptor in vitro and in vivo, using an siRNA expression construct based on the mir-187 precursor
    Minoru Kato, Yiying Huang, Mina Matsuo, Yoko Takashina, Kazuyo Sasaki, Yasushi Horai, Aya Juni, Shin‐ichi Kamijo, Kaoru Saigo, Kumiko Ui‐Tei et al. · 2016 · EXPERIMENTAL ANIMALS
  55. Cutting Edge Approaches for the Identification and the Functional Investigation of miRNAs in Brain Science
    Emanuela de Luca, Federica Marinaro, Francesco Niola, Davide De Pietri Tonelli · 2017 · Wiley eBooks
  56. Epigenetic Regulation of Neurogenesis by microRNAs
    Yangjian Liu, Daniel G. Abernathy, Andrew S.J. Yoo · 2017 · Elsevier eBooks
  57. Targeting Transgene and RNA Interference-Based Gene Silencing Sequences to Astrocytes Using Viral Vector-Mediated Approaches
    Dahna M. Fong, Angela J. Wu, Deborah Young · 2018 · Elsevier eBooks
  58. Using cell type-specific methods to understand molecular processes in the brain
    Rajput, Ashish · 2019
  59. The Synaptic RNAome - identification, interactions and intercellular transfer
    Epple, Robert · 2021
  60. Emerging Roles of Non-Coding RNA in Neuronal Function and Dysfunction
    Steven G. Fagan, Shona Pfeiffer · 2022 · IntechOpen eBooks
  61. Viral vectors with cluster of differentiation gene promoters to target specific cell types in the brain
    Naofumi Uesaka, Mariko Sekiguchi, Atsuya Takeuchi, Ryo Masumura · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  62. WTR: An Anterograde Tracing Toolkit for Neural Circuits Mapping
    Chao Chen, Aijia Yi-Luo, Ruogu Liu, Xiaoyan Cao, Siyuan Chang, Shikang Guan, Xiaoli Cui, Junting Hu, Wei Jia Zhou, Fei Zhao et al. · 2024 · SSRN Electronic Journal
  63. Selective abundance of miR-290-295 in the adult Substantia Nigra dopamine neurons is neuroprotective via preservation of protein synthesis
    Zixuan Li, Yang Xu, Nicola Murgia, Rongpu Liu, Ece Taşcı, Nikolay Kovzel, Dick San Ng, Haixia Jiang, Yu Liu, Xuejia Kang et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  64. Detection and quantification of MicroRNAs (miRNAs) and high-throughput miRNAs profiling
    Zixun Wang, Peng Shi · 2025 · Elsevier eBooks
  65. GABAergic MicroRNA-34a in the Dorsal Raphe Nuclei Contributes to Circulating MicroRNA-34a Levels
    Serafina Manila Guzzo, Donald Ielpo, Claudia Palazzo, Sofia Nutarelli, Elena Fiori, Elena Tittarelli, Carlo Cifani, Tiziana Pascucci, Cristina Marchetti, Maria Teresa Viscomi et al. · 2025 · Molecular Neurobiology
  66. NOVEL MECHANISMS IN DEPRESSION: FOCUS ON TELOMERE BIOLOGY AND EPIGENETIC REGULATION
    Ya Bin Wei · 2015 · Figshare
  67. Additional file 1 of miR-129-5p as a biomarker for pathology and cognitive decline in Alzheimer’s disease
    Han, Sang-Won, Pyun, Jung-Min, Paula J. Bice, Bennett, David A., Andrew J. Saykin, Kim, Sang Yun, Young Ho Park, Kwangsik T. Nho · 2024 · Figshare
  68. Additional file 2 of miR-129-5p as a biomarker for pathology and cognitive decline in Alzheimer’s disease
    Han, Sang-Won, Pyun, Jung-Min, Paula J. Bice, Bennett, David A., Andrew J. Saykin, Kim, Sang Yun, Young Ho Park, Kwangsik Nho · 2024 · Figshare
  69. In vivo AGO-APP for cell-type- and compartment-specific miRNA profiling in the mouse brain
    Surbhi Surbhi, Andrea Erni, Francesca Vincenzi, Béatrice Tessier, V. Venugopal, Gunter Meister, Alexandre Favereaux, Harold Cremer, Christophe Béclin · 2025 · Cell Reports Methods
  70. Synthetic nanoparticles for cell-type specific, spatially resolved loading and export of MiRNAs in neural cells
    Marianna Mignanelli, Giacomo Siano, Vincenzo Iannone, Arianna Scarlatti, Emanuele Orsini, Ludovico Maggi, Milena Rizzo, Maria Claudia Caiazza, Richard Wade‐Martins, Alessandra Salvetti et al. · 2026 · Journal of Nanobiotechnology
  71. Rôle du microARN miR-124 dans la plasticité homéostatique via le contrôle de l’expression de la synaptopodine et des récepteurs AMPA dans les neurones de l'hippocampe
    Sandra Dubes · 2019 · theses.fr (ABES)
  72. Mir147 Limits the Contribution of Non-Foamy Macrophages to Atherosclerosis
    Nan Li, K Taherdangkoo, Isabelle M. Baatsch, Tanya Guduru, Qiuxing Meng, Shilun Li, Yanyi Zhou, Xinwei Li, Mengyu Zhu, Sarah Polczer et al. · 2026 · Circulation
  73. Cerebellar microRNA-206 Tunes Purkinje Neuron Firing Dynamics to Control Sensorimotor Gating
    Mary P. Heyer, Masago Ishikawa, Junshi Wang, John Erol Evangelista, Amanda K. Fakira, Avi Ma’ayan, Guoping Feng, Paul J. Kenny · 2026 · SSRN Electronic Journal
  74. Protocol using AGO-APP for isolation and sequencing of argonaute-bound miRNAs in specific neuronal subtypes of the mouse brain
    Surbhi Surbhi, Andrea Erni, Harold Cremer, Christophe Béclin · 2026 · STAR Protocols
  75. MicroRNA correlates of resilience to Alzheimer’s disease identify candidate therapeutic targets for neuroprotection
    Pourya Naderi Yeganeh, Latika Matai, Quadri Adewale, Isabel Castanho, Alice Rodrigues, Maria Mavrikaki, Ioannis S. Vlachos, Frank John Slack, Winston Hide · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  76. A hypothalamic dynorphin-KOR pathway that orchestrates male sexual behavior under sexual competition
    Quanchi Lyu, Yang Zheng, Xun Ma, Luping Yin · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  77. Peripheral nerve injury alters metabolic function and neuronal excitability through the Lin28/let-7 pathway
    Xinbei Li, Jeon Sang-min, Ariella T. Kornfeld, Emily A. Eiss, Daniel S. Jin, Uche S Onuchukwu, Manasi Inamdar, Suyeon Kim, Sreenivas Eadara, Matthew Russell et al. · 2026 · Science Advances
  78. Role of a Novel microRNA in Adult Neurogenesis.
    Yao-Chang Tsan · 2014 · Deep Blue (University of Michigan)
  79. Motor neuron-derived microRNAs cause astrocyte dysfunction in amyotrophic lateral sclerosis
    Hoye, Mariah L, Regan, Melissa R, Jensen, Leah A, Lake, Allison M, Reddy, Linga V, Vidensky, Svetlana, Richard, Jean-Philippe, Maragakis, Nicholas J, Rothstein, Jeffrey D, Dougherty, Joseph D et al. · 2018 · Brain