Detecting Activated Cell Populations Using Single-Cell RNA-Seq

Cited by (464)

Items 101–200 of 464

1. Natural genetic variation determines microglia heterogeneity in wild-derived mouse models of Alzheimer’s disease
   Yang, Hongtian Stanley, Onos, Kristen D., Choi, Kwangbom, Keezer, Kelly J., Skelly, Daniel A., Carter, Gregory W., Howell, Gareth R. · 2021 · Cell Reports
2. The role of the genome in experience-dependent plasticity: Extending the analogy of the genomic action potential
   David F. Clayton, Ina Anreiter, Maria J. Aristizabal, Paul W. Frankland, Elisabeth B. Binder, Ami Citri · 2019 · Proceedings of the National Academy of Sciences
3. Stress relief: emerging methods to mitigate dissociation-induced artefacts
   Machado, Léo, Relaix, Frederic, Mourikis, Philippos · 2021 · Trends in Cell Biology
4. Prioritization of cell types responsive to biological perturbations in single-cell data with Augur
   Squair, Jordan W., Skinnider, Michael A., Gautier, Matthieu, Foster, Leonard J., Courtine, Grégoire · 2021 · Nature Protocols
5. ABBA+BraiAn, an integrated suite for whole-brain mapping, reveals brain-wide differences in immediate-early genes induction upon learning
   Nicolas Chiaruttini, Carlo Castoldi, Linda Maria Requie, Carmen Camarena-Delgado, Beatrice Dal Bianco, Johannes Gräff, Arne Seitz, Bianca A. Silva · 2025 · Cell Reports
6. Microglia-derived PDGFB promotes neuronal potassium currents to suppress basal sympathetic tonicity and limit hypertension
   Qianqian Bi, Chao Wang, Guo Cheng, Ningting Chen, Bo Wei, Xiaoli Liu, Li Li, Cheng Chang Lu, Jian He, Yuancheng Weng et al. · 2022 · Immunity
7. Epiregulin is a dendritic cell–derived EGFR ligand that maintains skin and lung fibrosis
   Ian D. Odell, Holly R. Steach, Stephen B. Gauld, Lauren Reinke-Breen, József Kármán, Tracy L. Carr, Joseph B. Wetter, Lucy A. Phillips, Monique Hinchcliff, Richard Anthony Flavell · 2022 · Science Immunology
8. Prenatal androgen exposure causes a sexually dimorphic transgenerational increase in offspring susceptibility to anxiety disorders
   Sanjiv Risal, Maria Manti, Haojiang Lu, Romina Fornes, Henrik Larsson, Anna Benrick, Qiaolin Deng, Carolyn E. Cesta, Mina A. Rosenqvist, Elisabet Stener‐Victorin · 2021 · Translational Psychiatry
9. Deep Parallel Characterization of AAV Tropism and AAV-Mediated Transcriptional Changes via Single-Cell RNA Sequencing
   David Alan Brown, Michael Altermatt, Tatyana Dobreva, Sisi Chen, Alexander Z. Wang, Matt W. Thomson, Viviana Gradinaru · 2021 · Frontiers in Immunology
10. Isolation of Adult Spinal Cord Nuclei for Massively Parallel Single-nucleus RNA Sequencing
    Kaya J.E. Matson, Anupama Sathyamurthy, Kory R. Johnson, Michael C. Kelly, Matthew W. Kelley, Ariel J. Levine · 2018 · Journal of Visualized Experiments
11. Deciphering Brain Complexity using Single-Cell Sequencing
    Quanhua Mu, Yiyun Chen, Jiguang Wang · 2019 · Genomics Proteomics & Bioinformatics
12. Neuronal identity defines α-synuclein and tau toxicity
    Roman Praschberger, Sabine Kuenen, Nils Schoovaerts, Natalie Kaempf, Jeevanjot Singh, Jasper Janssens, Jef Swerts, Eliana Nachman, Carles Calatayud, Stein Aerts et al. · 2023 · Neuron
13. Deletion of <i>Abi3</i> gene locus exacerbates neuropathological features of Alzheimer’s disease in a mouse model of Aβ amyloidosis
    Karahan, Hande, Smith, Daniel C., Kim, Byungwook, Dabin, Luke C., Al-Amin, Md Mamun, Wijeratne, H. R. Sagara, Pennington, Taylor, Viana di Prisco, Gonzalo, McCord, Brianne, Lin, Peter Bor-chian et al. · 2021 · Science Advances
14. Highly efficient and robust π-FISH rainbow for multiplexed in situ detection of diverse biomolecules
    Yingfeng Tao, Xiaoliu Zhou, Leqiang Sun, Da Lin, Huaiyuan Cai, Xi Chen, Wei Zhou, Bing Yang, Zhe Hu, Jing Yu et al. · 2023 · Nature Communications
15. Sevoflurane impairs m6A-mediated mRNA translation and leads to fine motor and cognitive deficits
    Lei Zhang, Yanyong Cheng, Zhenyu Xue, Jingjie Li, Niming Wu, Jia Yan, Jie Wang, Chao Wang, Weidong Chen, Tao Zhou et al. · 2021 · Cell Biology and Toxicology
16. How stress physically re-shapes the brain: Impact on brain cell shapes, numbers and connections in psychiatric disorders
    Dominic Kaul, Sibylle G. Schwab, Naguib Mechawar, Natalie Matosin · 2021 · Neuroscience & Biobehavioral Reviews
17. Genomic Approaches to Posttraumatic Stress Disorder: The Psychiatric Genomic Consortium Initiative
    Caroline M. Nievergelt, Allison E. Ashley‐Koch, Shareefa Dalvie, Michael A. Hauser, Rajendra A. Morey, Alicia K. Smith, Monica Uddin · 2018 · Biological Psychiatry
18. Lesion environments direct transplanted neural progenitors towards a wound repair astroglial phenotype in mice
    Timothy Mark O’Shea, Yongqin Ao, S. Wang, Alexander L. Wollenberg, Jae H. Kim, R. A. Ramos Espinoza, Anne Czechanski, Laura G. Reinholdt, Timothy J. Deming, Michael V. Sofroniew · 2022 · Nature Communications
19. Single‐cell RNA sequencing in Drosophila: Technologies and applications
    Hongjie Li · 2020 · Wiley Interdisciplinary Reviews Developmental Biology
20. Single-Cell Applications of Next-Generation Sequencing
    Naishitha Anaparthy, Yu-Jui Ho, Luciano Gastón Martelotto, Molly Hammell, James B Hicks · 2019 · Cold Spring Harbor Perspectives in Medicine
21. Reactive Astrocytes and Emerging Roles in Central Nervous System (CNS) Disorders
    Liddelow, Shane A., Olsen, Michelle L., Sofroniew, Michael V. · 2024 · Cold Spring Harbor Perspectives in Biology
22. Assessing evolutionary and developmental transcriptome dynamics in homologous cell types
    Christian Feregrino, Patrick Tschopp · 2021 · Developmental Dynamics
23. The Acute Stress Response in the Multiomic Era
    Floriou-Servou, Amalia, von Ziegler, Lukas, Waag, Rebecca, Schläppi, Christa, Germain, Pierre-Luc, Bohacek, Johannes · 2021 · Biological Psychiatry
24. Transcriptomic neuron types vary topographically in function and morphology
    Inbal Shainer, Johannes M. Kappel, Eva Laurell, Joseph C. Donovan, Martin Schneider, Enrico Kuehn, Irene Arnold-Ammer, Manuel Stemmer, Johannes Larsch, Herwig Baier · 2025 · Nature
25. Neural circuits regulating sexual behaviors via the olfactory system in mice
    Kentaro K. Ishii, Kazushige Touhara · 2018 · Neuroscience Research
26. Transcriptomic encoding of sensorimotor transformation in the midbrain
    Zhiyong Xie, Mengdi Wang, Zeyuan Liu, Congping Shang, Changjiang Zhang, Le Sun, Huating Gu, Gengxin Ran, Qing Pei, Qiang Ma et al. · 2021 · eLife
27. scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing
    Samuel E. Marsh · 2022
28. Single-cell analysis reveals region-heterogeneous responses in rhesus monkey spinal cord with complete injury
    Yongheng Fan, Xianming Wu, Sufang Han, Qi Zhang, Zheng Sun, Bing Chen, Xiaoyu Xue, Haipeng Zhang, Zhenni Chen, Man Yin et al. · 2023 · Nature Communications
29. Single-cell transcriptome analysis reveals the immune heterogeneity and the repopulation of microglia by Hif1α in mice after spinal cord injury
    Jingyu Wang, Lintao Xu, Weiwei Lin, Yin Yao, Heyangzi Li, Gerong Shen, Xi Cao, Ning He, Jun Chen, Jue Hu et al. · 2022 · Cell Death and Disease
30. Emerging technologies to study glial cells
    Hélène Hirbec, Nicole Déglon, Lynette C. Foo, Inbal Goshen, Jaime Grutzendler, Emilie Hangen, Tirzah Kreisel, Nathalie Linck, Julien Muffat, Sara Regio et al. · 2020 · Glia
31. CSF1R inhibitors induce a sex-specific resilient microglial phenotype and functional rescue in a tauopathy mouse model
    Johnson, Noah R., Yuan, Peng, Castillo, Erika, Lopez, T. Peter, Yue, Weizhou, Bond, Annalise, Rivera, Brianna M., Sullivan, Miranda C., Hirouchi, Masakazu, Giles, Kurt et al. · 2023 · Nature Communications
32. Olfactory bulb astrocytes mediate sensory circuit processing through Sox9 in the mouse brain
    Kevin Ung, Teng-Wei Huang, Brittney Lozzi, Junsung Woo, Elizabeth Hanson, Brandon T. Pekarek, Burak Tepe, Debosmita Sardar, Yi-Ting Cheng, Gary Liu et al. · 2021 · Nature Communications
33. Assessing Transcriptome Quality in Patch-Seq Datasets
    Tripathy, Shreejoy J., Toker, Lilah, Bomkamp, Claire, Mancarci, B. Ogan, Belmadani, Manuel, Pavlidis, Paul · 2018 · Frontiers in Molecular Neuroscience
34. Transient astrocyte‐like NG2 glia subpopulation emerges solely following permanent brain ischemia
    Denisa Kirdajová, Lukáš Valihrach, Martin Valný, Ján Kriška, Daniela Kročianová, Sarka Benesova, Pavel Abaffy, Daniel Žucha, Ruslan Klassen, Denisa Koleničová et al. · 2021 · Glia
35. Brain Region-Specific Gene Signatures Revealed by Distinct Astrocyte Subpopulations Unveil Links to Glioma and Neurodegenerative Diseases
    Raquel Cuevas‐Díaz Durán, Chih-Yen Wang, Hui Zheng, Benjamin Deneen, Jia Qian Wu · 2019 · eNeuro
36. Mapping the spatial transcriptomic signature of the hippocampus during memory consolidation
    Yann S. Vanrobaeys, Utsav Mukherjee, Lucy Langmack, Stacy E. Beyer, Ethan Bahl, Li‐Chun Lin, Jacob J. Michaelson, Ted G. Abel, Snehajyoti Chatterjee · 2023 · Nature Communications
37. Neuroinflammation in Prion Disease
    Bei Li, Meiling Chen, Caihong Zhu · 2021 · International Journal of Molecular Sciences
38. Pathogenesis, therapeutic strategies and biomarker development based on “omics” analysis related to microglia in Alzheimer’s disease
    Chao Gao, Xin Shen, Yuyan Tan, Shengdi Chen · 2022 · Journal of Neuroinflammation
39. Single-cell RNA and protein profiling of immune cells from the mouse brain and its border tissues
    Isabelle Scheyltjens, Hannah Van Hove, Karen De Vlaminck, Daliya Kancheva, Jonathan Bastos, Mónica Vara‐Pérez, Ana Rita Pombo Antunes, Liesbet Martens, Charlotte L. Scott, Jo A. Van Ginderachter et al. · 2022 · Nature Protocols
40. Tutorial: Guidelines for Single-Cell RT-qPCR
    Daniel Žucha, Mikael Kubista, Lukáš Valihrach · 2021 · Cells
41. Mapping cis-regulatory elements in human neurons links psychiatric disease heritability and activity-regulated transcriptional programs
    Carlos Sánchez-Priego, Ruiqi Hu, Linda L. Boshans, Matthew A. Lalli, Justyna A. Janas, Sarah Williams, Zhiqiang Dong, Nan Yang · 2022 · Cell Reports
42. Tools and Concepts for Interrogating and Defining Cellular Identity
    Kara L. McKinley, David Castillo‐Azofeifa, Ophir D. Klein · 2020 · Cell stem cell
43. Cellular profiling of a recently-evolved social behavior in cichlid fishes
    Zachary V. Johnson, Brianna E. Hegarty, George W. Gruenhagen, Tucker J. Lancaster, Patrick T. McGrath, Jeffrey Todd Streelman · 2023 · Nature Communications
44. Peripheral neuronal activation shapes the microbiome and alters gut physiology
    Jessica A. Griffiths, Bryan B. Yoo, Peter S. Thuy-Boun, Victor Cantu, Kelly C. Weldon, Collin Challis, Michael J. Sweredoski, Ken Y. Chan, Taren Thron, Gil Sharon et al. · 2024 · Cell Reports
45. INVADEseq to identify cell-adherent or invasive bacteria and the associated host transcriptome at single-cell-level resolution
    Galeano Niño, Jorge Luis, Wu, Hanrui, LaCourse, Kaitlyn D., Srinivasan, Harini, Fitzgibbon, Matthew, Minot, Samuel S., Sather, Cassie, Johnston, Christopher D., Bullman, Susan · 2023 · Nature Protocols
46. A neuronal coping mechanism linking stress-induced anxiety to motivation for reward
    Paul M. Klenowski, Rubing Zhao-Shea, Timothy G. Freels, Susanna Molas, Max Zinter, P Githure M'angale, Cong Xiao, Leonora Martínez‐Núñez, Travis Thomson, Andrew R. Tapper · 2023 · Science Advances
47. Transcriptome and proteome profiling of neural stem cells from the human subventricular zone in Parkinson’s disease
    Vanessa Donega, Saskia Maria Burm, Miriam E. van Strien, Emma J. van Bodegraven, Iryna Paliukhovich, Hanneke Geut, Wilma D. J. van de Berg, Ka Wan Li, August Benjamin Smit, Onur Başak et al. · 2019 · Acta Neuropathologica Communications
48. Ecotype differences in aggression, neural activity and behaviorally relevant gene expression in cichlid fish
    Nicole M. Baran, Jeffrey Todd Streelman · 2020 · Genes Brain & Behavior
49. Genetic approaches to access cell types in mammalian nervous systems
    Miao He, Z. Josh Huang · 2018 · Current Opinion in Neurobiology
50. Parallel metabolomics and lipidomics enables the comprehensive study of mouse brain regional metabolite and lipid patterns
    Huaxu Yu, Nathaniel Villanueva, Thibault P. Bittar, Eric Arsenault, Benoît Labonté, Tao Huan · 2020 · Analytica Chimica Acta
51. Neuronal representations of reward-predicting cues and outcome history with movement in the frontal cortex
    Masashi Kondo, M Matsuzaki · 2021 · Cell Reports
52. Single-cell transcriptomics as a framework and roadmap for understanding the brain
    Mark S. Cembrowski · 2019 · Journal of Neuroscience Methods
53. Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits
    Lindsay F. Rizzardi, Peter F. Hickey, Adrian Idrizi, Rakel Tryggvadóttir, Colin M. Callahan, Kimberly Stephens, Sean D. Taverna, Hao Zhang, Sinan Ramazanoglu, Kasper D. Hansen et al. · 2021 · Genome biology
54. Defining Microglial States and Nomenclature: A Roadmap to 2030
    Rosa Chiara Paolicelli, Amanda Sierra, Beth Stevens, Marie‐Ève Tremblay, Adriano Aguzzi, Bahareh Ajami, Ido Amit, Étienne Audinat, Ingo Bechmann, Mariko L. Bennett et al. · 2022 · SSRN Electronic Journal
55. Serotonin receptor 4 regulates hippocampal astrocyte morphology and function
    Franziska E. Müller, Sophie Kristin Schade, Volodymyr Cherkas, Laura Stopper, Björn Breithausen, Daniel Minge, Hristo Varbanov, Christian Wahl‐Schott, Svitlana Antoniuk, Cátia Domingos et al. · 2020 · Glia
56. Single cell transcriptomics reveals distinct transcriptional responses to oxycodone and buprenorphine by iPSC-derived brain organoids from patients with opioid use disorder
    Ming‐Fen Ho, Cheng Zhang, Irene Moon, Xiujuan Zhu, Brandon J. Coombes, Joanna M. Biernacka, Michelle K. Skime, Tyler Oesterle, Victor M. Karpyak, Kristen Schmidt et al. · 2022 · Molecular Psychiatry
57. The vascular gene Apold1 is dispensable for normal development but controls angiogenesis under pathological conditions
    Zheng Fan, Raphaela Ardicoglu, Aashil A. Batavia, Ruslan Rust, Lukas von Ziegler, Rebecca Waag, Jing Zhang, Thibaut Desgeorges, Oliver Sturman, Hairuo Dang et al. · 2023 · Angiogenesis
58. Cell-type-specific programs for activity-regulated gene expression
    Jesse M. Gray, Ivo Spiegel · 2018 · Current Opinion in Neurobiology
59. Gossypetin ameliorates 5xFAD spatial learning and memory through enhanced phagocytosis against Aβ
    Kyung Won Jo, Dohyun Lee, Dong Gon Cha, Eun-Ji Oh, Yoon Ha Choi, Somi Kim, Eun Seo Park, Jong Kyoung Kim, Kyong‐Tai Kim · 2022 · Alzheimer s Research & Therapy
60. MacroH2A restricts inflammatory gene expression in melanoma cancer-associated fibroblasts by coordinating chromatin looping
    Dan Filipescu, Saul Carcamo, Aman Agarwal, Navpreet Tung, Étienne Humblin, Matthew S. Goldberg, Nikki S. Vyas, Kristin G. Beaumont, Deniz Demircioğlu, Subhasree Sridhar et al. · 2023 · Nature Cell Biology
61. Immune pathway activation in neurons triggers neural damage after stroke
    Dongmei Wu, Jiping Liu, Jie Liu, Weihong Ge, Su-zhen Wu, Chi-jia Zeng, Jia Liang, KeJian Liu, Quan Lin, Xiaowu Hong et al. · 2023 · Cell Reports
62. Elucidating the cellular dynamics of the brain with single-cell RNA sequencing
    Aida Cardona‐Alberich, Manon Tourbez, Sarah F. Pearce, Christopher R. Sibley · 2021 · RNA Biology
63. Dissociation of microdissected mouse brain tissue for artifact free single-cell RNA sequencing
    Lu Liu, Simon Besson‐Girard, Hao Ji, K. Gehring, Buket Bulut, Tuğberk Kaya, Fumere Usifo, Mikael Simons, Özgün Gökçe · 2021 · STAR Protocols
64. Tissue Handling and Dissociation for Single-Cell RNA-Seq
    Felipe A. Vieira Braga, Ricardo J. Miragaia · 2019 · Methods in molecular biology
65. Using deep learning to quantify neuronal activation from single-cell and spatial transcriptomic data
    Ethan Bahl, Snehajyoti Chatterjee, Utsav Mukherjee, Muhammad Elsadany, Yann S. Vanrobaeys, Li‐Chun Lin, Miriam C. McDonough, Jon M. Resch, Karl-Peter Giese, Ted G. Abel et al. · 2024 · Nature Communications
66. Molecular encoding of stimulus features in a single sensory neuron type enables neuronal and behavioral plasticity
    Nathan Harris, Samuel G. Bates, Zihao Zhuang, Matthew Bernstein, Jamie M. Stonemetz, Tyler J. Hill, Yanxun V. Yu, John A. Calarco, Piali Sengupta · 2023 · Current Biology
67. The role of nitric oxide during embryonic wound healing
    P. Abaffy, Silvie Tománková, Ravindra Naraine, M. Kubista, Radek Šindelka · 2019 · BMC Genomics
68. A single‐cell RNA labeling strategy for measuring stress response upon tissue dissociation
    Anika Neuschulz, Olga Bakina, Victor Badillo Lisakowski, Pedro Olivares‐Chauvet, Thomas Conrad, Michael Gotthardt, Helmut Kettenmann, Jan Philipp Junker · 2022 · Molecular Systems Biology
69. Astrocyte diversity and subtypes: aligning transcriptomics with multimodal perspectives
    Maroussia Hennes, Maria Lucia Richter, Judith Fischer-Sternjak, Magdalena Götz · 2025 · EMBO Reports
70. Amygdala–liver signalling orchestrates glycaemic responses to stress
    Jamie R. E. Carty, Kavya Devarakonda, RICAHRD O’CONNOR, Azra Krek, D. Espinoza, Maria Jiménez-González, Alexandra Alvarsson, Rollie F. Hampton, Rosemary Li, Yunping Qiu et al. · 2025 · Nature
71. Cryopreservation of microglia enables single-cell RNA sequencing with minimal effects on disease-related gene expression patterns
    Morsey, Brenda, Niu, Meng, Dyavar, Shetty Ravi, Fletcher, Courtney V., Lamberty, Benjamin G., Emanuel, Katy, Fangmeier, Anna, Fox, Howard S. · 2021 · iScience
72. An integral blood–brain barrier in adulthood relies on microglia-derived PDGFB
    Yuancheng Weng, Ningting Chen, Rui Zhang, Jian He, Xukai Ding, Guo Cheng, Qianqian Bi, Ying‐Mei Lu, Xiao Z. Shen, Shu Wan et al. · 2023 · Brain Behavior and Immunity
73. Microglia Reactivity: Heterogeneous Pathological Phenotypes
    Hélène Hirbec, François Rassendren, Étienne Audinat · 2019 · Methods in molecular biology
74. NeST: nested hierarchical structure identification in spatial transcriptomic data
    Benjamin L. Walker, Qing Hua Nie · 2023 · Nature Communications
75. Environmentally enriched pigs have transcriptional profiles consistent with neuroprotective effects and reduced microglial activity
    Sarah M. Brown, Stephen J. Bush, KIM M. SUMMERS, David Arthur Hume, Alistair B Lawrence · 2018 · Behavioural Brain Research
76. Roles and Transcriptional Responses of Inhibitory Neurons in Learning and Memory
    Corinna Giorgi, Silvia Marinelli · 2021 · Frontiers in Molecular Neuroscience
77. Singling out motor neurons in the age of single-cell transcriptomics
    Jacob A. Blum, Aaron D. Gitler · 2022 · Trends in Genetics
78. Ensheathing glia promote increased lifespan and healthy brain aging
    Lihong Sheng, Emily J. Shields, Janko Gospočić, Masato Sorida, Linyang Ju, China N. Byrns, Faith R. Carranza, Shelley L. Berger, Nancy M. Bonini, Roberto Bonasio · 2023 · Aging Cell
79. Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system
    Igor I. Adameyko, Trygve E. Bakken, Aparna Bhaduri, Chintan Chhatbar, Mariella G. Filbin, David Gate, Hannah Hochgerner, Chang N. Kim, Jordan Edward Krull, Gioele La Manno et al. · 2024 · Nature Neuroscience
80. LAK: Lasso and K-Means Based Single-Cell RNA-Seq Data Clustering Analysis
    Jiao Hua, Hongkun Liu, Boyang Zhang, Shuilin Jin · 2020 · IEEE Access
81. Evaluating microglial phenotypes using single-cell technologies
    Roman Sankowski, Gianni Monaco, Marco Prinz · 2021 · Trends in Neurosciences
82. Stimulation of medial amygdala GABA neurons with kinetically different channelrhodopsins yields opposite behavioral outcomes
    Aiste Baleisyte, Ralf Schneggenburger, Olexiy Kochubey · 2022 · Cell Reports
83. Single cell RNA sequencing of the adult Drosophila eye reveals distinct clusters and novel marker genes for all major cell types
    Kelvin Yeung, Komal Kumar Bollepogu Raja, Yoon-Kyung Shim, Yumei Li, Rui Chen, Graeme Mardon · 2022 · Communications Biology
84. Combining segmental bulk- and single-cell RNA-sequencing to define the chondrocyte gene expression signature in the murine knee joint
    Vikram Sunkara, Gitta Anne Heinz, Frederik Heinrich, Pawel Durek, Ali Mobasheri, Mir‐Farzin Mashreghi, Annemarie Lang · 2021 · Osteoarthritis and Cartilage
85. Prion protein and prion disease at a glance
    Caihong Zhu, Adriano Aguzzi · 2021 · Journal of Cell Science
86. Parallel neural pathways control sodium consumption and taste valence
    Yameng Zhang, Allan‐Hermann Pool, Tongtong Wang, Lu Liu, Elin Kang, Bei Zhang, Liang Ding, Kirsten L. Frieda, Richard D. Palmiter, Yuki Oka · 2023 · Cell
87. Functional Consequences of Calcium-Dependent Synapse-to-Nucleus Communication: Focus on Transcription-Dependent Metabolic Plasticity
    Anna M. Hagenston, Hilmar Bading, Carlos Bas Orth · 2019 · Cold Spring Harbor Perspectives in Biology
88. Loss of Kmt2c or Kmt2d primes urothelium for tumorigenesis and redistributes KMT2A–menin to bivalent promoters
    Naitao Wang, Mohini R. Pachai, Dan Li, Cindy J. Lee, Sarah Warda, Makhzuna N. Khudoynazarova, Woo Hyun Cho, Guojia Xie, Sagar R Shah, Yao Li et al. · 2025 · Nature Genetics
89. Somatic regulation of female germ cell regeneration and development in planarians
    Umair W. Khan, Phillip A. Newmark · 2022 · Cell Reports
90. Epigenetic and Transcriptional Regulation of Spontaneous and Sensory Activity Dependent Programs During Neuronal Circuit Development
    Gabriele Pumo, Taro Kitazawa, Filippo M. Rijli · 2022 · Frontiers in Neural Circuits
91. The Development of Mechanical Allodynia in Diabetic Rats Revealed by Single-Cell RNA-Seq
    Han Zhou, Xiaosheng Yang, Chenlong Liao, Hongjin Chen, Yiwei Wu, Binran Xie, Fukai Ma, WenChuan Zhang · 2022 · Frontiers in Molecular Neuroscience
92. Opto-seq reveals input-specific immediate-early gene induction in ventral tegmental area cell types
    Rhiana C. Simon, Mary C. Loveless, Joshua X. Yee, Brandon Goh, Su G. Cho, Zainab Nasir, Koichi Hashikawa, Garret D. Stuber, Larry S. Zweifel, Marta E. Soden · 2024 · Neuron
93. Erasure of Biologically Meaningful Signal by Unsupervised scRNAseq Batch-correction Methods
    Scott R. Tyler, Ernesto Guccione, Eric E. Schadt · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
94. Prediction error neurons in mouse cortex are molecularly targetable cell types
    Sean M. O'Toole, Hassana K. Oyibo, Georg B. Keller · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
95. Foxm1 regulates neural progenitor fate during spinal cord regeneration
    Diane Pelzer, Lauren S. Phipps, Raphaël Thuret, Carlos J. Gallardo-Dodd, Syed Murtuza Baker, Karel Dorey · 2021 · EMBO Reports
96. Using mechanical homogenization to isolate microglia from mouse brain tissue to preserve transcriptomic integrity
    Shawn Herron, Jean-Christophe Delpech, Charlotte Madore, Tsuneya Ikezu · 2022 · STAR Protocols
97. Immune stimulation recruits a subset of pro-regenerative macrophages to the retina that promotes axonal regrowth of injured neurons
    Lien Andries, Daliya Kancheva, Luca Masin, Isabelle Scheyltjens, Hannah Van Hove, Karen De Vlaminck, Steven Bergmans, Marie Claes, Lies De Groef, Lieve Moons et al. · 2023 · Acta Neuropathologica Communications
98. Sex Differences in Biophysical Signatures across Molecularly Defined Medial Amygdala Neuronal Subpopulations
    Heidi Y. Matos, David Hernandez‐Pineda, Claire M. Charpentier, Allison Rusk, Joshua G. Corbin, Kevin S. Jones · 2020 · eNeuro
99. Unbiased identification of novel transcription factors in striatal compartmentation and striosome maturation
    Maria‐Daniela Cirnaru, Sicheng Song, Kizito‐Tshitoko Tshilenge, Chuhyon Corwin, Justyna Mleczko, Carlos Galicia Aguirre, Houda Benlhabib, Jaroslav M. Bendl, Pasha Apontes, John F. Fullard et al. · 2021 · eLife
100. From valence encoding to motivated behavior: A focus on the nucleus accumbens circuitry
     Natacha Vieitas‐Gaspar, Carina Soares‐Cunha, Ana João Rodrigues · 2025 · Neuroscience & Biobehavioral Reviews