Detecting Activated Cell Populations Using Single-Cell RNA-Seq

Wu, Ye Emily, Pan, Lin, Zuo, Yanning, Li, Xinmin, Hong, Weizhe·2017·Neuron

DOI 10.1016/j.neuron.2017.09.026

Cited by (464)

Items 201–300 of 464

Chronic social defeat alters brain vascular-associated cell gene expression patterns leading to vascular dysfunction and immune system activation
Joshua D. Samuels, Madison L. Lotstein, Michael L. Lehmann, ABDEL G. ELKAHLOUN, Subhadra Banerjee, Miles A. Herkenham · 2023 · Journal of Neuroinflammation
A single cell genomics atlas of the Drosophila larval eye reveals distinct photoreceptor developmental timelines
Komal Kumar Bollepogu Raja, Kelvin Yeung, Yoon-Kyung Shim, Yumei Li, Rui Chen, Graeme Mardon · 2023 · Nature Communications
G2S3: A gene graph-based imputation method for single-cell RNA sequencing data
Weimiao Wu, Qile Dai, Yunqing Liu, Xiting Yan, Zuoheng Wang · 2021 · PLoS Computational Biology
Mitigating autocorrelation during spatially resolved transcriptomics data analysis
Kamal Maher, Morgan Wu, Yiming Zhou, Jiahao Huang, Qiangge Zhang, Xiao Wang · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
Single‐Nucleus RNA‐Sequencing in Brain Tissue
Waag, Rebecca, Bohacek, Johannes · 2023 · Current Protocols
Drug targeting in psychiatric disorders — how to overcome the loss in translation?
Konstantin V. Khodosevich, Katarina Dragičević, Oliver David Howes · 2023 · Nature Reviews Drug Discovery
Essential roles of plexin-B3+ oligodendrocyte precursor cells in the pathogenesis of Alzheimer’s disease
Naomi Nihonmatsu-Kikuchi, Xiu‐Jun Yu, Yoshiki Matsuda, Nobuyuki Ozawa, Taeko Ito, Kazuhito Satou, Tadashi Kaname, Yasushi Iwasaki, Akio Akagi, Mari Yoshida et al. · 2021 · Communications Biology
acorde unravels functionally interpretable networks of isoform co-usage from single cell data
Ángeles Arzalluz-Luque, Pedro Salguero, Sonia Tarazona, Ana Conesa · 2022 · Nature Communications
Single-Cell Transcriptional Profiling and Gene Regulatory Network Modeling in Tg2576 Mice Reveal Gender-Dependent Molecular Features Preceding Alzheimer-Like Pathologies
Muhammad Ali, Oihane Uriarte Huarte, Tony Heurtaux, Pierre Garcia, Beatriz Pardo Rodriguez, Kamil Grzyb, Rashi Halder, Alexander Skupin, Manuel Buttini, Enrico Glaab · 2022 · Molecular Neurobiology
Activity‐regulated gene expression across cell types of the mouse hippocampus
Erik D. Nelson, Kristen R. Maynard, Kyndall R. Nicholas, Matthew Nguyen Tran, Heena R. Divecha, Leonardo Collado‐Torres, Stephanie C. Hicks, Keri Martinowich · 2023 · Hippocampus
Distinctive biophysical features of human cell-types: insights from studies of neurosurgically resected brain tissue
Homeira Moradi Chameh, Madeleine R. Falby, Mandana Movahed, Keon Arbabi, Scott Rich, Liang Zhang, Jérémie Lefebvre, Shreejoy J. Tripathy, Maurizio De Pittà, Taufik A. Valiante · 2023 · Frontiers in Synaptic Neuroscience
A clock-dependent brake for rhythmic arousal in the dorsomedial hypothalamus
Qiang Liu, Benjamin J. Bell, Dong Won Kim, Sang‐Soo Lee, Mehmet F. Keleş, Qili Liu, Ian David Blum, Annette A. Wang, Elijah J. Blank, Jiali Xiong et al. · 2023 · Nature Communications
Thin graphene oxide nanoflakes modulate glutamatergic synapses in the amygdala cultured circuits: Exploiting synaptic approaches to anxiety disorders
Nicola Secomandi, Audrey Franceschi Biagioni, Kostas Kostarelos, Giada Cellot, Laura Ballerini · 2020 · Nanomedicine Nanotechnology Biology and Medicine
NMDARs Drive the Expression of Neuropsychiatric Disorder Risk Genes Within GABAergic Interneuron Subtypes in the Juvenile Brain
Vivek Mahadevan, Apratim Mitra, Yajun Zhang, Xiaoqing Q Yuan, Areg Peltekian, Ramesh Chittajallu, Caroline Esnault, Dragan Maric, Christopher T. Rhodes, Kenneth A. Pelkey et al. · 2021 · Frontiers in Molecular Neuroscience
RIIβ‐PKA in GABAergic Neurons of Dorsal Median Hypothalamus Governs White Adipose Browning
Bingwei Wang, Miao Zhao, Zhijie Su, Baohua Jin, Xiaoning Yang, Chenyu Zhang, Bingbing Guo, Jiebo Li, Weili Hong, Jiarui Liu et al. · 2022 · Advanced Science
Cadherins orchestrate specific patterns of perisomatic inhibition onto distinct pyramidal cell populations
Julie Jézéquel, Giuseppe Condomitti, Tim Kroon, Fursham Hamid, Stella Sanalidou, Teresa Garcés, Patricia A. Maeso, Maddalena Balia, Zhaohui Hu, Setsuko Sahara et al. · 2025 · Nature Communications
GABA Signaling in the Posterodorsal Medial Amygdala Mediates Stress-induced Suppression of LH Pulsatility in Female Mice
Caitlin McIntyre, Xiao Feng Li, Ross de Burgh, Deyana Ivanova, Geffen Lass, Kevin T. O’Byrne · 2022 · Endocrinology
Cell-type specific profiling of histone post-translational modifications in the adult mouse striatum
Marco D. Carpenter, Delaney K. Fischer, Shuo Zhang, Allison M. Bond, Kyle S. Czarnecki, Morgan T. Woolf, Hongjun Song, Elizabeth A. Heller · 2022 · Nature Communications
Opioid-driven disruption of the septal complex reveals a role for neurotensin-expressing neurons in withdrawal
Rhiana C. Simon, Weston Fleming, Brandy A. Briones, Marta Trzeciak, Pranav Senthilkumar, Kentaro K. Ishii, Madelyn M. Hjort, Madison M. Martin, Koichi Hashikawa, Andrea D. Sanders et al. · 2024 · Neuron
Implications of stress-induced gene expression for hematopoietic stem cell aging studies
Anna Konturek-Cieśla, Rasmus Olofzon, Shabnam Kharazi, David Bryder · 2024 · Nature Aging
Uncovering Discrete Synaptic Proteomes to Understand Neurological Disorders
Yizhi Wang, Jeffrey N. Savas · 2018 · Proteomes
EGFR-STAT1 pathway drives fibrosis initiation in fibroinflammatory skin diseases
Anahi V. Odell, Nathan M. Newton, Anna S. Eisenstein, Goran Micevic, Richard Anthony Flavell, Ian D. Odell · 2025 · Nature Communications
Single-cell transcriptome atlas of Drosophila gastrula 2.0
Shunta Sakaguchi, Sonoko Mizuno, Yasushi Okochi, Chiharu Tanegashima, Osamu Nishimura, Tadashi Uemura, Mitsutaka Kadota, Honda Naoki, Takefumi Kondo · 2023 · Cell Reports
Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model
Bogale Aredo, Ashwani Kumar, Bo Chen, Chao Xing, Rafael L. Ufret-Vincenty · 2023 · Investigative Ophthalmology & Visual Science
Cell specification and functional interactions in the pig blastocyst inferred from single-cell transcriptomics and uterine fluids proteomics
Adrien Dufour, Cyril Kurylo, Jan B. Stöckl, Dénis Laloë, Yoann Bailly, Patrick Manceau, Frédéric Martins, Ali G. Turhan, Stéphane Ferchaud, Bertrand Pain et al. · 2024 · Genomics
A brief history of somatostatin interneuron taxonomy or: how many somatostatin subtypes are there, really?
Ariel Agmon, Alison L. Barth · 2024 · Frontiers in Neural Circuits
aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph
Jia Li, Yu Shyr, Qi Liu · 2024 · Genome biology
A brain center that controls consummatory responses
Jose A Canovas, Li Wang, Ahmed A. M. Mohamed, Larry F. Abbott, Charles S. Zuker · 2025 · Cell
Automatic Cell Type Annotation Using Marker Genes for Single-Cell RNA Sequencing Data
Yu Chen, Shuqin Zhang · 2022 · Biomolecules
Elucidating memory in the brain via single‐cell transcriptomics
Kaitlin E. Sullivan, Rennie M. Kendrick, Mark S. Cembrowski · 2020 · Journal of Neurochemistry
Molecular taxonomy of the primate amygdala via single-nucleus RNA sequencing analysis
Lei Zhang, Yanyong Cheng, Shihao Wu, Yufeng Lu, Zhenyu Xue, Xiao Chen, Dai Chen, Bo Zhang, Zilong Qiu, Hong Jiang · 2021 · 中国科学通报：英文版
STExplore: An Integrated Online Platform for Comprehensive Analysis and Visualization of Spatial Transcriptomics Data
Yongtian Wang, Jintian Luo, Shaoqing Jiao, Xiaohan Xie, Tao Wang, Jie Liu, Xuequn Shang, Jiajie Peng · 2025 · Small Methods
Single-Cell Entropy to Quantify the Cellular Order Parameter from Single-Cell RNA-Seq Data
Jingxin Liu, You Song, Jinzhi Lei · 2020 · Biophysical Reviews and Letters
Single-Cell Analysis for Whole-Organism Datasets
Angela Oliveira Pisco, Bruno M. Tojo, Aaron McGeever · 2021 · Annual Review of Biomedical Data Science
Lessons from single cell sequencing in CNS cell specification and function
Zhen Li, William A. Tyler, Tarik F. Haydar · 2020 · Current Opinion in Genetics & Development
Cell‐type specific knockout of peptidylglycine α‐amidating monooxygenase reveals specific behavioral roles in excitatory forebrain neurons and cardiomyocytes
Kathryn G. Powers, Xin‐Ming Ma, Betty A. Eipper, Richard E. Mains · 2020 · Genes Brain & Behavior
Single-cell profiling of glial cells from the mouse amygdala under opioid dependent and withdrawal states
Yan Yan, Bridget Truitt, Junyi Tao, Sean Michael Boyles, Danielle Antoine, William F. Hulme, Sabita Roy · 2023 · iScience
Comparative transcriptomics reveals highly conserved regional programs between porcine and human colonic enteric nervous system
Tao Li, Marco Morselli, Trent Su, Mulugeta Million, Muriel H. Larauche, Matteo A. Pellegrini, Yvette Taché, Pu‐Qing Yuan · 2023 · Communications Biology
Cortical glia in SOD1(G93A) mice are subtly affected by ALS-like pathology
Tereza Filipi, Zuzana Matusova, Pavel Abaffy, Ondřej Vaňátko, Jana Turečková, Sarka Benesova, Monika Kubiskova, Denisa Kirdajová, Jakub Zahumenský, Lukáš Valihrach et al. · 2023 · Scientific Reports
Characterization of mWake expression in the murine brain
Benjamin J. Bell, Annette A. Wang, Dong Won Kim, Jiali Xiong, Seth Blackshaw, Mark N. Wu · 2020 · The Journal of Comparative Neurology
Transcriptome analysis of gene expression changes upon enzymatic dissociation in skeletal myoblasts
Atsuko Miyawaki‐Kuwakado, Qianmei Wu, Akihito Harada, Kosuke Tomimatsu, Takeru Fujii, Kazumitsu Maehara, Yasuyuki Ohkawa · 2021 · Genes to Cells
Targeting Microglial Disturbances to Protect the Brain From Neurodevelopmental Disorders Associated With Prematurity
Andrée Delahaye‐Duriez, Adrien Dufour, Cindy Bokobza, Pierre Gressèns, Juliette Van Steenwinckel · 2021 · Journal of Neuropathology & Experimental Neurology
Microbial production of short-chain fatty acids attenuates long-term neurologic impairment after traumatic brain injury
Zujian Xiong, Brittany P. Dodson, Matthew Brian Rogers, Chaim T. Sneiderman, Keri L. Janesko‐Feldman, Vincent Vagni, Mioara D. Manole, Xuejun Li, Dhivyaa Rajasundaram, Robert S. B. Clark et al. · 2025 · Journal of Neuroinflammation
Transcriptomic analysis of paternal behaviors in prairie voles
Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · BMC Genomics
TLR9 in satellite glial cells promotes paclitaxel-induced neuropathic pain by reducing Kir4.1 transcription through histone methylation activation
Qingtian Luo, Jian Wei Jiang, Qing Zhu, 王飒爽, Yifei Wu, Nan Li, Xiyuan Ba, Fengling Wu, Xu Liu, Yuhui Luo et al. · 2025 · Brain Behavior and Immunity
Induction of A Disintegrin and Metalloproteinase with Thrombospondin motifs 1 by a rare variant or cognitive activities reduces hippocampal amyloid-β and consequent Alzheimer’s disease risk
Yunjie Qiu, Longze Sha, Xiuneng Zhang, Guanjun Li, Wanwan Zhu, Qi Xu · 2022 · Frontiers in Aging Neuroscience
Molecular Diversity of Neuron Types in the Salamander Amygdala and Implications for Amygdalar Evolution
Astrid Deryckere, Jamie Woych, Eliza C.B. Jaeger, Maria Antonietta Tosches · 2022 · Brain Behavior and Evolution
Chromatin-Binding Protein PHF6 Regulates Activity-Dependent Transcriptional Networks to Promote Hunger Response
Linhua Gan, Jingjing Sun, Shuo Yang, Xiaocui Zhang, Chen Wu, Yiyu Sun, Xiaohua Wu, Cheng Cheng, Jing Tang Yuan, Anan Li et al. · 2020 · Cell Reports
P. aeruginosa type III and type VI secretion systems modulate early response gene expression in type II pneumocytes in vitro
Emel Sen-Kilic, Annalisa B. Huckaby, F. Damron, M. Barbier · 2022 · BMC Genomics
Neural cell isolation from adult macaques for high-throughput analyses and neurosphere cultures
Jia-Ru Wei, Dongchang Xiao, Lei Tang, Nana Xu, Ruifeng Liu, Yuhui Shen, Zihui Xu, Xuan Sang, Jian Ge, Mengqing Xiang et al. · 2023 · Nature Protocols
Single-nucleus profiling of adult mice sub-ventricular zone after blast-related traumatic brain injury
Manrui Li, Xiameng Chen, Qiuyun Yang, Shuqiang Cao, Steven C. Wyler, Ruixuan Yuan, Lingxuan Zhang, Miao Liao, Meili Lv, Feng Wang et al. · 2023 · Scientific Data
Early Alzheimer’s disease pathology in human cortex is associated with a transient phase of distinct cell states
Vahid Gazestani, Tushar Kamath, Naeem M. Nadaf, S.J. Burris, Brendan Rooney, Antti Junkkari, Charles R. Vanderburg, Tuomas H. Rauramaa, Martine Therrien, Matthew Tegtmeyer et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
Opioid-driven disruption of the septal complex reveals a role for neurotensin-expressing neurons in withdrawal
Rhiana C. Simon, Weston Fleming, Pranav Senthilkumar, Brandy A. Briones, Kentaro K. Ishii, Madelyn M. Hjort, Madison M. Martin, Koichi Hashikawa, Andrea D. Sanders, Sam A. Golden et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
The transcriptomic landscape of spinal V1 interneurons reveals a role for En1 in specific elements of motor output
Alexandra J. Trevisan, Katie Han, Phillip Chapman, Anand Sunil Kulkarni, Jennifer M. Hinton, Cody Ramirez, Ines Klein, Graziana Gatto, Mariano I. Gabitto, Vilas Menon et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Whole-brain in situ mapping of neuronal activation in Drosophila during social behaviors and optogenetic stimulation
Kiichi Watanabe, Hui Chiu, David J. Anderson · 2023 · eLife
Developments from Bulk Optogenetics to Single-Cell Strategies to Dissect the Neural Circuits that Underlie Aberrant Motivational States
Jose Rodríguez-Romaguera, Vijay M.K. Namboodiri, Marcus L. Basiri, Alice M. Stamatakis, Stuber Garret D. · 2020 · Cold Spring Harbor Perspectives in Medicine
Protocol for the generation of single-nuclei RNA-seq libraries and quantification of heterogeneous cell types activated during social interaction
Hailee Walker, Nicholas Alonzo Frost · 2024 · STAR Protocols
Genome-wide transcriptomics of the amygdala reveals similar oligodendrocyte-related responses to acute and chronic alcohol drinking in female mice
Sharvari Narendra, Claudia Klengel, Bilal Hamzeh, Drasti Patel, Joy Otten, Roy Lardenoije, Emily L. Newman, Klaus A. Miczek, Torsten Klengel, Kerry James Ressler et al. · 2022 · Translational Psychiatry
Effects of chronic light cycle disruption during adolescence on circadian clock, neuronal activity rhythms, and behavior in mice
Pablo Bonilla, Alexandria Shanks, Yatin Nerella, Alessandra Porcu · 2024 · Frontiers in Neuroscience
Single-cell molecular and developmental perspectives of sexually dimorphic circuits underlying innate social behaviors
Esther Serrano‐Saiz, Yoh Isogai · 2021 · Current Opinion in Neurobiology
Shaping the human brain: evolutionary cis-regulatory plasticity drives changes in synaptic activity-controlled adaptive gene expression
Priit Pruunsild, Hilmar Bading · 2019 · Current Opinion in Neurobiology
Minimizing the ex vivo confounds of cell-isolation techniques on transcriptomic -profiles of purified microglia
Sarah R. Ocañas, Kevin D. Pham, Harris E. Blankenship, Adeline H. Machalinski, Ana J. Chucair‐Elliott, Willard M. Freeman · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
Editorial Focus: White matter-associated microglia (WAMs) represent an important link between aging, white matter disease and microglial activity
Austyn D. Roseborough, Victoria Jaremek, Shawn Narain Whitehead · 2021 · GeroScience
Daily light-induced transcription in visual cortex neurons drives downward firing rate homeostasis and stabilizes sensory processing
Dahlia Kushinsky, Emmanouil Tsivourakis, Daniella Apelblat, Ori Roethler, Mor Breger-Mikulincer, Katayun Cohen-Kashi Malina, Ivo Spiegel · 2024 · Cell Reports
Investigating the mechanisms of inflammation and immune alterations in Parkinson's disease using spatial transcriptomics techniques
Sen Zhang, Yifan Geng, Xing Yu Jiang, Zhiyuan Sun, Min Yan, Jun Bi, Xuewen Tian, Qinglu Wang · 2024 · Brain Research Bulletin
Combinative Protein Expression of Immediate Early Genes c‐Fos, Arc, and Npas4 Along Aversive and Appetitive Experience‐Related Neural Networks
Mary Arai, Hisayuki Osanai, Chris C. Snell, Kaylea E. Gawf, 貴司北村, Sachie K. Ogawa · 2025 · Hippocampus
Neuronal Activation of the Gastrointestinal Tract Shapes the Gut Environment in Mice
Bryan B. Yoo, Jessica A. Griffiths, Peter S. Thuy-Boun, Victor Cantu, Kelly C. Weldon, Collin Challis, Michael J. Sweredoski, Ken Y. Chan, Taren Thron, Gil Sharon et al. · 2021 · CaltechAUTHORS (California Institute of Technology)
From Reductionism Toward Integration: Understanding How Social Behavior Emerges From Integrated Circuits
Sarah Y. Dickinson, Diane A. Kelly, Stéphanie L. Padilla, Joseph F. Bergan · 2022 · Frontiers in Integrative Neuroscience
ELOA3 : A primate-specific RNA polymerase II elongation factor encoded by a tandem repeat gene cluster
Marc A. Morgan, Saeid Mohammad Parast, Marta Iwanaszko, Yuki Aoi, DongAhn Yoo, Zachary J. Dumar, Benjamin C. Howard, Kathryn A. Helmin, Qianli Liu, William R. Thakur et al. · 2023 · Science Advances
Topographic Organization of Glutamatergic and GABAergic Parvalbumin-Positive Neurons in the Lateral Habenula
Thi Van Trang Nguyen, Tomoya Nakamura, Hiroyuki Ichijo · 2024 · eNeuro
Optogenetics for light control of biological systems
2022 · Nature Reviews Methods Primers
Droplet Barcoding-Based Single Cell Transcriptomics of Adult Mammalian Tissues
Jo Anne Stratton, Sarthak Sinha, Wisoo Shin, Elodie Labit, Tak‐Ho Chu, Prajay T. Shah, Rajiv Midha, Jeff A. Biernaskie · 2019 · Journal of Visualized Experiments
Single-cell RNA-Sequencing in Neuroscience
Simone Mayer, Shokoufeh Khakipoor, Maxim A. Droemer, Daniel A. Cozetto · 2019 · e-Neuroforum
Pubertal sex hormones control transcriptional trajectories in the medial preoptic area
Koichi Hashikawa, Yoshiko Hashikawa, Yuejia Liu, Mark A. Rossi, Marcus L. Basiri, Jane Chen, Omar R. Ahmad, Rishi V. Mukundan, Nathan L. Johnston, Jenna A. McHenry et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
Cell types in the mouse amygdala and their transcriptional response to fear conditioning
Hannah Hochgerner, Muhammad Tibi, S. Netser, Osnat Ophir, Nuphar Reinhardt, Shelly Singh, Zhi-Hang Lin, S. Wagner, Amit Zeisel · 2022 · bioRxiv
Single‐Cell RNA ‐Sequencing of Zebrafish Olfactory Epithelium Identifies Odor‐Responsive Candidate Olfactory Receptors
Misaki Takaoka, Towako Hiraki‐Kajiyama, Nobuhiko Miyasaka, Takahiro Hino, Kenji Kondo, Yoshihiro Yoshihara · 2025 · Genes to Cells
Toward informed batch correction for single-cell transcriptome integration
Shuang Li, Malte D. Luecken, John C. Marioni, Sarah Amalia Teichmann, Peng He · 2026 · Nature Computational Science
The elusive transcriptional memory trace
Beatriz Gil-Martí, Celia G. Barredo, Sara Pina-Flores, José Luís Trejo, Enrique Turiégano, Francisco A. Martín · 2022 · Oxford Open Neuroscience
The sinking platform test: a novel paradigm to measure persistence in animal models
Gabriele Floris, Sean C. Godar, Giulia Braccagni, Ignazio Stefano Piras, Alicia Ravens, Mary Tresa Zanda, Matthew J. Huentelman, Marco Bortolato · 2024 · Neuropsychopharmacology
Advancements in Genomic and Behavioral Neuroscience Analysis for the Study of Normal and Pathological Brain Function
Annalisa M. Baratta, Adam J. Brandner, Sonja L. Plasil, Rachel C. Rice, Sean P. Farris · 2022 · Frontiers in Molecular Neuroscience
Applications of single‐cell multi‐omics sequencing in deep understanding of brain diseases
Xu Zhang, Ping Lü, Xiaorong Shen · 2022 · Clinical and Translational Discovery
Neuronal activity‐related transcription is blunted in immature compared to mature dentate granule cells
Sarah Parylak, Fan Qiu, Sara B. Linker, Iryna S. Gallina, Christina K. Lim, David Preciado, Aidan H. McDonald, Xavier Zhou, Fred H. Gage · 2023 · Hippocampus
CSF1R inhibitor levels determine sex-specific phenotype of resilient microglia and neurofunctional rescue leading to extended survival in tauopathy mice
Noah R. Johnson, Peng Yuan, Erika Castillo, T. Peter Lopez, Weizhou Yue, Annalise Bond, Brianna M. Rivera, Miranda C. Sullivan, Masakazu Hirouchi, Kurt Giles et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
Peripheral Neuronal Activation Shapes the Microbiome and Alters Gut Physiology
Jessica A. Griffiths, Bryan B. Yoo, Peter Thuy-Boun, Victor Cantu, Kelly C. Weldon, Collin Challis, Michael J. Sweredoski, Ken Y. Chan, Taren Thron, Gil Sharon et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
Single nucleus RNA-sequencing reveals transcriptional synchrony across different relationships
Liza E. Brusman, Julie M. Sadino, Allison C. Fultz, Michael A. Kelberman, Robin D. Dowell, Mary Ann Allen, Zoe R. Donaldson · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Neuropeptide Y co-opts neuronal ensembles for memory lability and stability
Yan‐Jiao Wu, Xue Gu, Yalei Kong, Shuo Yang, Huan Wang, Miao Xu, Qi Wang, Xin Yi, Ze-Jie Lin, Zhi-Han Jiao et al. · 2026 · Nature Neuroscience
Capturing dynamic neuronal responses to dominant and subordinate social hierarchy members with catFISH
Madeleine F. Dwortz, James P. Curley · 2025 · Neuroscience
Single-Cell Transcriptome Reveals Cell Type–Specific Molecular Pathology in a 2VO Cerebral Ischemic Mouse Model
Qian Zhang, Xu Zhong, Jian-Feng Guo, Shang-Hang Shen · 2024 · Molecular Neurobiology
Preparation of single cell suspensions enriched in mouse brain vascular cells for single-cell RNA sequencing
Akari Yamazaki, Francis Shue, Yu Yamazaki, Yuka A. Martens, Guojun Bu, Chia‐Chen Liu · 2021 · STAR Protocols
Connectivity and molecular profiles of Foxp2 ‐ and Dbx1 ‐lineage neurons in the accessory olfactory bulb and medial amygdala
Nandkishore Prakash, Heidi Y. Matos, Sonia Sebaoui, Luke Tsai, Tuyen Tran, Adejimi Aromolaran, Isabella Atrachji, Nya Campbell, Meredith Goodrich, David Hernandez‐Pineda et al. · 2023 · The Journal of Comparative Neurology
Integrating single-cell transcriptomics and microcircuit computer modeling
Vineet Reddy, Mohamed Sherif, Rammohan Shukla · 2021 · Current Opinion in Pharmacology
Identification of crucial genes that induce coronary atherosclerosis through endothelial cell dysfunction in AMI-identifying hub genes by WGCNA.
Sentong Xiao, Chunyan Kuang · 2022 · PubMed Central
NMDAR-mediated transcriptional control of gene expression during the development of medial ganglionic eminence-derived interneurons
Vivek Mahadevan, Apratim Mitra, Yajun Zhang, Xiaoqing Q Yuan, Areg Peltekian, Ramesh Chittajallu, Caroline Esnault, Dragan Maric, Christopher T. Rhodes, Kenneth A. Pelkey et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
Transcriptomic and spatial organization of mouse spinal cord projection neurons
Jun-Kai Lin, Yuan Liu, Juan Deng, Lin-Han Wang, Qing Li, Liu Chen, Wen-Qun Ding, Ai‐Hui Tang, Yannong Dou, Yan-Gang Sun · 2025 · Cell Reports
Non‐contact immunological signaling for highly‐efficient regulation of the transcriptional map of human monocytes
D. Hashoul, Walaa Saliba, Y. Broza, H. Haick · 2023 · Bioengineering & Translational Medicine
Impaired pheromone detection and abnormal sexual behavior in female mice deficient for ancV1R
Hiro Kondo, Tetsuo Iwata, Koji Sato, Riseru Koshiishi, Hikoyu Suzuki, Ken Murata, Marc Spehr, Kazushige Touhara, Masato Nikaido, Junji Hirota · 2024 · Current Biology
Single-cell technology grows up: Leveraging high-resolution omics approaches to understand neurodevelopmental disorders
Joseph D. Dougherty, Simona Sarafinovska, Sneha M. Chaturvedi, Travis E. Law, Titilope M. Akinwe, Harrison W. Gabel · 2025 · Current Opinion in Neurobiology
Projection-TAGs enable multiplex projection tracing and multi-modal profiling of projection neurons
Lite Yang, Fang Liu, Hannah Hahm, Takao Okuda, Xiaoyue Li, Yufen Zhang, Vani Kalyanaraman, Monique R. Heitmeier, Vijay K. Samineni · 2025 · Nature Communications
Cold Mechanical Isolation of Placental Macrophages as a Method to Limit Procedure-Induced Activation of Macrophages
Sharon Eskandar, Romy E. Bezemer, Bart J. L. Eggen, Jelmer Riemer Prins · 2023 · The Journal of Immunology
Deciphering the distinct transcriptomic and gene regulatory map in adult macaque basal ganglia cells
Zihao Li, Yunong Sun, Lingjun Ding, Jing Yang, Jinrong Huang, Mengnan Cheng, Liang Wu, Zhenkun Zhuang, Cheng Chen, Yunqi Huang et al. · 2022 · GigaScience