Cited by 68CRISPR and Genetic EngineeringSkin and Cellular Biology ResearchVirus-based gene therapy research

Ex Vivo COL7A1 Correction for Recessive Dystrophic Epidermolysis Bullosa Using CRISPR/Cas9 and Homology-Directed Repair

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Izmiryan, Araksya, Ganier, Clarisse, Bovolenta, Matteo, Schmitt, Alain, Mavilio, Fulvio, Hovnanian, Alain·2018·Molecular Therapy Nucleic Acids

Abstract

Recessive dystrophic epidermolysis bullosa is a rare and severe genetic skin disease resulting in blistering of the skin and mucosa. Recessive dystrophic epidermolysis bullosa (RDEB) is caused by a wide variety of mutations in COL7A1-encoding type VII collagen, which is essential for dermal-epidermal adhesion. Here we demonstrate the feasibility of ex vivo COL7A1 editing in primary RDEB cells and in grafted 3D skin equivalents through CRISPR/Cas9-mediated homology-directed repair. We designed five guide RNAs to correct a RDEB causative null mutation in exon 2 (c.189delG; p.Leu64Trpfs*40). Among the site-specific guide RNAs tested, one showed significant cleavage activity in primary RDEB keratinocytes and in fibroblasts when delivered as integration-deficient lentivirus. Genetic correction was detected in transduced keratinocytes and fibroblasts by allele-specific highly sensitive TaqMan-droplet digital PCR (ddPCR), resulting in 11% and 15.7% of corrected COL7A1 mRNA expression, respectively, without antibiotic selection. Grafting of genetically corrected 3D skin equivalents onto nude mice showed up to 26% re-expression and normal localization of type VII collagen as well as anchoring fibril formation at the dermal-epidermal junction. Our study provides evidence that precise genome editing in primary RDEB cells is a relevant strategy to genetically correct COL7A1 mutations for the development of future ex vivo clinical applications.

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Crossref · 10.1016/j.omtn.2018.06.008

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  • CRISPR/Cas9-mediated homology-directed repair via an ex vivo approach conducted gene correction for recessive dystrophic epidermolysis bullosa.

    “Another study also utilised CRISPR/Cas9-mediated, homology-directed repair via an ex vivo approach to conduct gene correction for recessive dystrophic epidermolysis bullosa [120].”

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  1. [1]Varki R. Sadowski S. Uitto J. Pfendner E. Epidermolysis bullosa. II. Type VII collagen mutations and phenotype-genotype correlations in the dystrophic subtypes J. Med. Genet. 44 2007 181 192 16971478 PMC2598021
  2. [2]Bruckner-Tuderman L. Dystrophic epidermolysis bullosa: pathogenesis and clinical features Dermatol. Clin. 28 2010 107 114 19945622
  3. [3]Chung H.J. Uitto J. Type VII collagen: the anchoring fibril protein at fault in dystrophic epidermolysis bullosa Dermatol. Clin. 28 2010 93 105 19945621 PMC2791403
  4. [4]Dang N. Murrell D.F. Mutation analysis and characterization of COL7A1 mutations in dystrophic epidermolysis bullosa Exp. Dermatol. 17 2008 553 568 18558993
  5. [5]Hovnanian A. Rochat A. Bodemer C. Petit E. Rivers C.A. Prost C. Fraitag S. Christiano A.M. Uitto J. Lathrop M. Characterization of 18 new mutations in COL7A1 in recessive dystrophic epidermolysis bullosa provides evidence for distinct molecular mechanisms underlying defective anchoring fibril formation Am. J. Hum. Genet. 61 1997 599 610 9326325 PMC1715975
  6. [6]Kim M. Murrell D.F. Update on the pathogenesis of squamous cell carcinoma development in recessive dystrophic epidermolysis bullosa Eur. J. Dermatol. 25 Suppl 1 2015 30 32 26083672
  7. [7]Fine J.D. Bruckner-Tuderman L. Eady R.A. Bauer E.A. Bauer J.W. Has C. Heagerty A. Hintner H. Hovnanian A. Jonkman M.F. Inherited epidermolysis bullosa: updated recommendations on diagnosis and classification J. Am. Acad. Dermatol. 70 2014 1103 1126 24690439
  8. [8]Cong L. Ran F.A. Cox D. Lin S. Barretto R. Habib N. Hsu P.D. Wu X. Jiang W. Marraffini L.A. Zhang F. Multiplex genome engineering using CRISPR/Cas systems Science 339 2013 819 823 23287718 PMC3795411
  9. [9]Miller J.C. Tan S. Qiao G. Barlow K.A. Wang J. Xia D.F. Meng X. Paschon D.E. Leung E. Hinkley S.J. A TALE nuclease architecture for efficient genome editing Nat. Biotechnol. 29 2011 143 148 21179091
  10. [10]Pâques F. Duchateau P. Meganucleases and DNA double-strand break-induced recombination: perspectives for gene therapy Curr. Gene Ther. 7 2007 49 66 17305528
  11. [11]Urnov F.D. Miller J.C. Lee Y.L. Beausejour C.M. Rock J.M. Augustus S. Jamieson A.C. Porteus M.H. Gregory P.D. Holmes M.C. Highly efficient endogenous human gene correction using designed zinc-finger nucleases Nature 435 2005 646 651 15806097
  12. [12]Lombardo A. Genovese P. Beausejour C.M. Colleoni S. Lee Y.L. Kim K.A. Ando D. Urnov F.D. Galli C. Gregory P.D. Gene editing in human stem cells using zinc finger nucleases and integrase-defective lentiviral vector delivery Nat. Biotechnol. 25 2007 1298 1306 17965707
  13. [15]Osborn M.J. Starker C.G. McElroy A.N. Webber B.R. Riddle M.J. Xia L. DeFeo A.P. Gabriel R. Schmidt M. von Kalle C. TALEN-based gene correction for epidermolysis bullosa Mol. Ther. 21 2013 1151 1159 23546300 PMC3677309
  14. [16]Izmiryan A. Danos O. Hovnanian A. Meganuclease-Mediated COL7A1 Gene Correction for Recessive Dystrophic Epidermolysis Bullosa J. Invest. Dermatol. 136 2016 872 875 26897595
  15. [17]Chamorro C. Mencía A. Almarza D. Duarte B. Büning H. Sallach J. Hausser I. Del Río M. Larcher F. Murillas R. Gene Editing for the Efficient Correction of a Recurrent COL7A1 Mutation in Recessive Dystrophic Epidermolysis Bullosa Keratinocytes Mol. Ther. Nucleic Acids 5 2016 e307 27045209 PMC5014520
  16. [18]Hainzl S. Peking P. Kocher T. Murauer E.M. Larcher F. Del Rio M. Duarte B. Steiner M. Klausegger A. Bauer J.W. COL7A1 Editing via CRISPR/Cas9 in Recessive Dystrophic Epidermolysis Bullosa Mol. Ther. 25 2017 2573 2584 28800953 PMC5675435
  17. [20]Sentmanat M.F. Peters S.T. Florian C.P. Connelly J.P. Pruett-Miller S.M. A Survey of Validation Strategies for CRISPR-Cas9 Editing Sci. Rep. 8 2018 888 29343825 PMC5772360
  18. [22]Miyaoka Y. Chan A.H. Judge L.M. Yoo J. Huang M. Nguyen T.D. Lizarraga P.P. So P.L. Conklin B.R. Isolation of single-base genome-edited human iPS cells without antibiotic selection Nat. Methods 11 2014 291 293 24509632 PMC4063274
  19. [23]Jacków J. Titeux M. Portier S. Charbonnier S. Ganier C. Gaucher S. Hovnanian A. Gene-Corrected Fibroblast Therapy for Recessive Dystrophic Epidermolysis Bullosa using a Self-Inactivating COL7A1 Retroviral Vector J. Invest. Dermatol. 136 2016 1346 1354 26994967
  20. [24]Titeux M. Pendaries V. Zanta-Boussif M.A. Décha A. Pironon N. Tonasso L. Mejia J.E. Brice A. Danos O. Hovnanian A. SIN retroviral vectors expressing COL7A1 under human promoters for ex vivo gene therapy of recessive dystrophic epidermolysis bullosa Mol. Ther. 18 2010 1509 1518 20485266 PMC2927071
  21. [25]Uitto J. Christiano A.M. McLean W.H. McGrath J.A. Novel molecular therapies for heritable skin disorders J. Invest. Dermatol. 132 2012 820 828 22158553 PMC3572786
  22. [26]Gorell E.S. Leung T.H. Khuu P. Lane A.T. Purified type I collagen wound matrix improves chronic wound healing in patients with recessive dystrophic epidermolysis bullosa Pediatr. Dermatol. 32 2015 220 225 25557742
  23. [27]Siprashvili Z. Nguyen N.T. Gorell E.S. Loutit K. Khuu P. Furukawa L.K. Lorenz H.P. Leung T.H. Keene D.R. Rieger K.E. Safety and Wound Outcomes Following Genetically Corrected Autologous Epidermal Grafts in Patients With Recessive Dystrophic Epidermolysis Bullosa JAMA 316 2016 1808 1817 27802546
  24. [28]Tolar J. Wagner J.E. Allogeneic blood and bone marrow cells for the treatment of severe epidermolysis bullosa: repair of the extracellular matrix Lancet 382 2013 1214 1223 24095195 PMC3959900
  25. [29]Georgiadis C. Syed F. Petrova A. Abdul-Wahab A. Lwin S.M. Farzaneh F. Chan L. Ghani S. Fleck R.A. Glover L. Lentiviral Engineered Fibroblasts Expressing Codon-Optimized COL7A1 Restore Anchoring Fibrils in RDEB J. Invest. Dermatol. 136 2016 284 292 26763448 PMC4759620
  26. [30]Mavilio F. Pellegrini G. Ferrari S. Di Nunzio F. Di Iorio E. Recchia A. Maruggi G. Ferrari G. Provasi E. Bonini C. Correction of junctional epidermolysis bullosa by transplantation of genetically modified epidermal stem cells Nat. Med. 12 2006 1397 1402 17115047
  27. [31]Hirsch T. Rothoeft T. Teig N. Bauer J.W. Pellegrini G. De Rosa L. Scaglione D. Reichelt J. Klausegger A. Kneisz D. Regeneration of the entire human epidermis using transgenic stem cells Nature 551 2017 327 332 29144448 PMC6283270
  28. [32]Chen M. Kasahara N. Keene D.R. Chan L. Hoeffler W.K. Finlay D. Barcova M. Cannon P.M. Mazurek C. Woodley D.T. Restoration of type VII collagen expression and function in dystrophic epidermolysis bullosa Nat. Genet. 32 2002 670 675 12426566
  29. [33]Moiani A. Paleari Y. Sartori D. Mezzadra R. Miccio A. Cattoglio C. Cocchiarella F. Lidonnici M.R. Ferrari G. Mavilio F. Lentiviral vector integration in the human genome induces alternative splicing and generates aberrant transcripts J. Clin. Invest. 122 2012 1653 1666 22523069 PMC3347495
  30. [34]Stein S. Ott M.G. Schultze-Strasser S. Jauch A. Burwinkel B. Kinner A. Schmidt M. Krämer A. Schwäble J. Glimm H. Genomic instability and myelodysplasia with monosomy 7 consequent to EVI1 activation after gene therapy for chronic granulomatous disease Nat. Med. 16 2010 198 204 20098431
  31. [35]Corrigan-Curay J. O’Reilly M. Kohn D.B. Cannon P.M. Bao G. Bushman F.D. Carroll D. Cathomen T. Joung J.K. Roth D. Genome editing technologies: defining a path to clinic Mol. Ther. 23 2015 796 806 25943494 PMC4427885
  32. [37]Jinek M. East A. Cheng A. Lin S. Ma E. Doudna J. RNA-programmed genome editing in human cells eLife 2 2013 e00471 23386978 PMC3557905
  33. [39]Choi S.M. Kim Y. Shim J.S. Park J.T. Wang R.H. Leach S.D. Liu J.O. Deng C. Ye Z. Jang Y.Y. Efficient drug screening and gene correction for treating liver disease using patient-specific stem cells Hepatology 57 2013 2458 2468 23325555 PMC3633649
  34. [40]Huang X. Wang Y. Yan W. Smith C. Ye Z. Wang J. Gao Y. Mendelsohn L. Cheng L. Production of Gene-Corrected Adult Beta Globin Protein in Human Erythrocytes Differentiated from Patient iPSCs After Genome Editing of the Sickle Point Mutation Stem Cells 33 2015 1470 1479 25702619 PMC4628786
  35. [41]Nelson C.E. Hakim C.H. Ousterout D.G. Thakore P.I. Moreb E.A. Castellanos Rivera R.M. Madhavan S. Pan X. Ran F.A. Yan W.X. In vivo genome editing improves muscle function in a mouse model of Duchenne muscular dystrophy Science 351 2016 403 407 26721684 PMC4883596
  36. [42]Osborn M.J. Gabriel R. Webber B.R. DeFeo A.P. McElroy A.N. Jarjour J. Starker C.G. Wagner J.E. Joung J.K. Voytas D.F. Fanconi anemia gene editing by the CRISPR/Cas9 system Hum. Gene Ther. 26 2015 114 126 25545896 PMC4326027
  37. [43]Perez E.E. Wang J. Miller J.C. Jouvenot Y. Kim K.A. Liu O. Wang N. Lee G. Bartsevich V.V. Lee Y.L. Establishment of HIV-1 resistance in CD4+ T cells by genome editing using zinc-finger nucleases Nat. Biotechnol. 26 2008 808 816 18587387 PMC3422503
  38. [45]Cherry A.B. Daley G.Q. Reprogrammed cells for disease modeling and regenerative medicine Annu. Rev. Med. 64 2013 277 290 23327523 PMC3629705
  39. [46]Inoue H. Nagata N. Kurokawa H. Yamanaka S. iPS cells: a game changer for future medicine EMBO J. 33 2014 409 417 24500035 PMC3989624
  40. [48]Umegaki-Arao N. Pasmooij A.M. Itoh M. Cerise J.E. Guo Z. Levy B. Gostyński A. Rothman L.R. Jonkman M.F. Christiano A.M. Induced pluripotent stem cells from human revertant keratinocytes for the treatment of epidermolysis bullosa Sci. Transl. Med. 6 2014 264ra164 25429057
  41. [49]Webber B.R. Osborn M.J. McElroy A.N. Twaroski K. Lonetree C.L. DeFeo A.P. Xia L. Eide C. Lees C.J. McElmurry R.T. CRISPR/Cas9-based genetic correction for recessive dystrophic epidermolysis bullosa NPJ Regen. Med. 1 2016 16014 28250968 PMC5328670
  42. [51]Wu W. Lu Z. Li F. Wang W. Qian N. Duan J. Zhang Y. Wang F. Chen T. Efficient in vivo gene editing using ribonucleoproteins in skin stem cells of recessive dystrophic epidermolysis bullosa mouse model Proc. Natl. Acad. Sci. USA 114 2017 1660 1665 28137859 PMC5321012
  43. [52]Tolar J. McGrath J.A. Xia L. Riddle M.J. Lees C.J. Eide C. Keene D.R. Liu L. Osborn M.J. Lund T.C. Patient-specific naturally gene-reverted induced pluripotent stem cells in recessive dystrophic epidermolysis bullosa J. Invest. Dermatol. 134 2014 1246 1254 24317394 PMC3989384
  44. [53]Shinkuma S. Guo Z. Christiano A.M. Site-specific genome editing for correction of induced pluripotent stem cells derived from dominant dystrophic epidermolysis bullosa Proc. Natl. Acad. Sci. USA 113 2016 5676 5681 27143720 PMC4878469
  45. [54]Coluccio A. Miselli F. Lombardo A. Marconi A. Malagoli Tagliazucchi G. Gonçalves M.A. Pincelli C. Maruggi G. Del Rio M. Naldini L. Targeted gene addition in human epithelial stem cells by zinc-finger nuclease-mediated homologous recombination Mol. Ther. 21 2013 1695 1704 23760447 PMC3776632
  46. [55]Kuscu C. Arslan S. Singh R. Thorpe J. Adli M. Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease Nat. Biotechnol. 32 2014 677 683 24837660
  47. [57]Slaymaker I.M. Gao L. Zetsche B. Scott D.A. Yan W.X. Zhang F. Rationally engineered Cas9 nucleases with improved specificity Science 351 2016 84 88 26628643 PMC4714946
  48. [58]Kleinstiver B.P. Pattanayak V. Prew M.S. Tsai S.Q. Nguyen N.T. Zheng Z. Joung J.K. High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects Nature 529 2016 490 495 26735016 PMC4851738
  49. [60]Merienne N. Vachey G. de Longprez L. Meunier C. Zimmer V. Perriard G. Canales M. Mathias A. Herrgott L. Beltraminelli T. The Self-Inactivating KamiCas9 System for the Editing of CNS Disease Genes Cell Rep. 20 2017 2980 2991 28930690
  50. [61]Ran F.A. Hsu P.D. Lin C.Y. Gootenberg J.S. Konermann S. Trevino A.E. Scott D.A. Inoue A. Matoba S. Zhang Y. Zhang F. Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity Cell 154 2013 1380 1389 23992846 PMC3856256
  51. [62]Shen B. Zhang W. Zhang J. Zhou J. Wang J. Chen L. Wang L. Hodgkins A. Iyer V. Huang X. Skarnes W.C. Efficient genome modification by CRISPR-Cas9 nickase with minimal off-target effects Nat. Methods 11 2014 399 402 24584192
  52. [64]Izmiryan A. Basmaciogullari S. Henry A. Paques F. Danos O. Efficient gene targeting mediated by a lentiviral vector-associated meganuclease Nucleic Acids Res. 39 2011 7610 7619 21715375 PMC3177226
  53. [65]Brinkman E.K. Chen T. Amendola M. van Steensel B. Easy quantitative assessment of genome editing by sequence trace decomposition Nucleic Acids Res. 42 2014 e168 25300484 PMC4267669
  54. [66]Rochat A. Kobayashi K. Barrandon Y. Location of stem cells of human hair follicles by clonal analysis Cell 76 1994 1063 1073 8137423

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Authors
Izmiryan, A., Ganier, C., Bovolenta, M., Schmitt, A., Mavilio, F., & Hovnanian, A.
Affiliations
  • Inserm (FR)
  • University of Modena and Reggio Emilia (IT)
  • Hôpital Necker-Enfants Malades (FR)
Corresponding author
Hovnanian, Alain
Venue
Molecular Therapy Nucleic Acids
Publisher
Elsevier BV
Published
2018-09
Volume
12
Pages
554-567
ISSN
2162-2531 (ISSN-L)
OpenAlex
W2811052782
Cited by
68
References
12
Citations by year
2026: 4 · 2025: 5 · 2024: 4 · 2023: 6 · 2022: 12 · 2021: 10 · 2020: 16 · 2019: 10 · 2018: 1
FWCI
3.29
Type
journal article
Language
en
Open access
Locations
  • Molecular Therapy — Nucleic Acids (publishedVersion, cc-by)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • IRIS UNIMORE (University of Modena and Reggio Emilia) (submittedVersion, cc-by)
  • HAL (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • Institutional Research Information System University of Ferrara (University of Ferrara) (submittedVersion, cc-by)
Funders
  • Debra International
  • Dystrophic Epidermolysis Bullosa Research Association
  • European Research Council (ERC-2010-AdG)
  • Association Française contre les Myopathies
  • Institut National de la Santé et de la Recherche Médicale
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › CRISPR and Genetic Engineering
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Skin and Cellular Biology Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
Keywords
recessive dystrophic epidermolysis bullosa, COL7A1, type VII collagen, CRISPR/Cas9, homology-directed repair, ex vivo gene editing, keratinocytes, fibroblasts, 3D skin equivalents, basement membrane zone, anchoring fibrils, lentiviral gene delivery, droplet digital PCR, gene correction

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