Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations

Wilson, Nicola K., Kent, David G., Buettner, Florian, Shehata, Mona, Macaulay, Iain C., Calero-Nieto, Fernando J., Sánchez Castillo, Manuel, Oedekoven, Caroline A. +9 more·2015·Cell Stem Cell

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Items 201–300 of 468

  1. Mitochondria-enriched hematopoietic stem cells exhibit elevated self-renewal capabilities, thriving within the context of aged bone marrow
    Haruhito Totani, Takayoshi Matsumura, Rui Yokomori, Terumasa Umemoto, Yuji Takihara, Chong Yang, Lee Hui Chua, Atsushi Watanabe, Takaomi Sanda, Toshio Suda · 2025 · Nature Aging
  2. Retracing the in vivo haematopoietic tree using single‐cell methods
    Leïla Perié, Ken R. Duffy · 2016 · FEBS Letters
  3. CATS (FAM64A) abnormal expression reduces clonogenicity of hematopoietic cells
    Isabella Barbutti, Juliana M. Xavier-Ferrucio, João Agostinho Machado‐Neto, Lauremília Ricon, Fabı́ola Traina, Stefan K. Bohlander, Sara Teresinha Olalla Saad, Leticia Fröhlich Archangelo · 2016 · Oncotarget
  4. Neurogenin3 phosphorylation controls reprogramming efficiency of pancreatic ductal organoids into endocrine cells
    R. Azzarelli, S. Rulands, Sonia Nestorowa, J. Davies, S. Campinoti, S. Gillotin, P. Bonfanti, B. Göttgens, M. Huch, B. Simons et al. · 2018 · Scientific Reports
  5. Linked optical and gene expression profiling of single cells at high-throughput
    Jesse Q. Zhang, Christian A. Siltanen, Leqian Liu, Kai‐Chun Chang, Zev J. Gartner, Adam R. Abate · 2020 · Genome biology
  6. KIT as a therapeutic target for non-oncological diseases
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  7. Reconciling Flux Experiments for Quantitative Modeling of Normal and Malignant Hematopoietic Stem/Progenitor Dynamics
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  8. DDX41 is needed for pre- and postnatal hematopoietic stem cell differentiation in mice
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  9. Fluidic Logic Used in a Systems Approach to Enable Integrated Single-Cell Functional Analysis
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  10. Cell type hierarchy reconstruction via reconciliation of multi-resolution cluster tree
    Minshi Peng, Brie Wamsley, Andrew G. Elkins, Daniel H. Geschwind, Yuting Wei, Kathryn Roeder · 2021 · Nucleic Acids Research
  11. EBF1 primes B-lymphoid enhancers and limits the myeloid bias in murine multipotent progenitors
    Aurelie Lenaerts, Iwo Kuciński, Ward Deboutte, Marta Derecka, Pierre Cauchy, Thomas Manke, Berthold Göttgens, Rudolf Grosschedl · 2022 · The Journal of Experimental Medicine
  12. Identification of hematopoietic stem cells residing in the meninges of adult mice at steady state
    Chunxiao Niu, Jijun Yu, Tao Zou, Yuchen Lu, Lijiao Deng, Hongfang Yun, Chuan-Yimu Si, Xian Wu, Hui Jiang, Tingting Guo et al. · 2022 · Cell Reports
  13. Impact of DNA methylation programming on normal and pre-leukemic hematopoiesis
    Jens Langstein, Michael D. Milsom, Daniel B. Lipka · 2017 · Seminars in Cancer Biology
  14. Post-transcriptional regulation in hematopoiesis: RNA binding proteins take control
    Laura P. M. H. de Rooij, Derek C.H. Chan, Ava Keyvani Chahi, Kristin J. Hope · 2018 · Biochemistry and Cell Biology
  15. A track of the clones: new developments in cellular barcoding
    Anne-Marie Lyne, David G. Kent, Elisa Laurenti, Kerstin Cornils, Ingmar Glauche, Leïla Perié · 2018 · Experimental Hematology
  16. Modulation of bone marrow haematopoietic stem cell activity as a therapeutic strategy after myocardial infarction: a preclinical study
    Jasmin Rettkowski, Mari Carmen Romero-Mulero, Indranil Singh, Carolin Wadle, Jan Wrobel, Diana Chiang, Natalie Hoppe, Julian Mess, Katharina Schönberger, Maria‐Eleni Lalioti et al. · 2025 · Nature Cell Biology
  17. PTBP1 promotes hematopoietic stem cell maintenance and red blood cell development by ensuring sufficient availability of ribosomal constituents
    Matilda Rehn, Anne Wenzel, Anne-Katrine Frank, Mikkel Bruhn Schuster, Sachin Pundhir, Nanna Jørgensen, Kristoffer Vitting‐Seerup, Ying Chun Ge, Johan Jendholm, Magali Michaut et al. · 2022 · Cell Reports
  18. LepR+ niche cell–derived AREG compromises hematopoietic stem cell maintenance under conditions of DNA repair deficiency and aging
    Limei Wu, Qiqi Lin, Srinivas Chatla, Surya P. Amarachintha, Andrew F. Wilson, Neha Atale, Zhenxia J. Gao, Jonathan Joseph, Emily V. Wolff, Wei Du · 2023 · Blood
  19. Single Cell Gene Expression to Understand the Dynamic Architecture of the Heart
    Andrea Massaia, Patricia Cháves, Sara Samari, Ricardo J. Miragaia, Kerstin B. Meyer, Sarah Amalia Teichmann, Michela Noseda · 2018 · Frontiers in Cardiovascular Medicine
  20. CRISPR/Cas9 uPAR Gene Knockout Results in Tumor Growth Inhibition, EGFR Downregulation and Induction of Stemness Markers in Melanoma and Colon Carcinoma Cell Lines
    Alessio Biagioni, Anastasia Chillà, Mario Del Rosso, Gabriella Fibbi, Francesca Scavone, Elena Andreucci, Silvia Peppicelli, Francesca Bianchini, Lido Calorini, Anna Li Santi et al. · 2021 · Frontiers in Oncology
  21. Isolation and Assessment of Single Long‐Term Reconstituting Hematopoietic Stem Cells from Adult Mouse Bone Marrow
    David G. Kent, Brad J. Dykstra, Connie J. Eaves · 2016 · Current Protocols in Stem Cell Biology
  22. SON is an essential m6A target for hematopoietic stem cell fate
    Hanzhi Luo, Mariela Cortés-López, Cyrus L. Tam, Michael J. Xiao, Isaac Wakiro, Karen L. Chu, Aspen Pierson, Mandy Chan, Kathryn Chang, Xuejing Yang et al. · 2023 · Cell stem cell
  23. How hematopoietic stem/progenitors and their niche sense and respond to infectious stress
    Hiroshi Kobayashi, Toshio Suda, Keiyo Takubo · 2015 · Experimental Hematology
  24. Targeting clotting proteins in cancer therapy – progress and challenges
    Wolfram Ruf, Andrea S. Rothmeier, Claudine Graf · 2016 · Thrombosis Research
  25. Stabilizing hematopoietic stem cells in vitro
    Adam C. Wilkinson, Hiromitsu Nakauchi · 2020 · Current Opinion in Genetics & Development
  26. Aging, hematopoiesis, and the myelodysplastic syndromes
    Stephen S. Chung, Christopher Y. Park · 2017 · Hematology
  27. New frameworks for hematopoiesis derived from single-cell genomics
    Ksenia R. Safina, Peter van Galen · 2024 · Blood
  28. Pre-existing stem cell heterogeneity dictates clonal responses to the acquisition of leukemic driver mutations.
    Indranil Singh, Daniel Fernández-Pérez, P. Sánchez, Alejo E. Rodriguez-Fraticelli · 2025 · Cell Stem Cell
  29. Sox2 modulation increases naïve pluripotency plasticity
    Kathryn Tremble, Giuliano Giuseppe Stirparo, Lawrence E. Bates, Katsiaryna Maskalenka, Hannah T. Stuart, Kenneth Jones, Amanda Andersson-Rolf, Aliaksandra Radzisheuskaya, Bon‐Kyoung Koo, Paul Bertone et al. · 2021 · iScience
  30. Hematopoietic Progenitors and the Bone Marrow Niche Shape the Inflammatory Response and Contribute to Chronic Disease
    Yangsong Xu, Andrew James Murphy, Andrew J. Fleetwood · 2022 · International Journal of Molecular Sciences
  31. Functional dissection of hematopoietic stem cell populations with a stemness-monitoring system based on NS-GFP transgene expression
    Mohamed A. E. Ali, K. Fuse, Yuko Tadokoro, Takayuki Hoshii, M. Ueno, Masahiko Kobayashi, Naho Nomura, H. Vu, Hui-Yun Peng, A. Hegazy et al. · 2017 · Scientific Reports
  32. Application of single-cell RNA sequencing methodologies in understanding haematopoiesis and immunology
    A. M. Ranzoni, P. Strzelecka, A. Cvejic · 2019 · Essays in Biochemistry
  33. Sex differences in DNMT3A-mutant clonal hematopoiesis and the effects of estrogen
    Julia Stomper, Abhishek Niroula, Roger Belizaire, Marie E. McConkey, Tagore Sanketh Bandaru, Benjamin L. Ebert · 2025 · Cell Reports
  34. Side Population: Its Use in the Study of Cellular Heterogeneity and as a Potential Enrichment Tool for Rare Cell Populations
    Elize Wolmarans, Sulette Nel, Chrisna Durandt, Juanita Mellet, Michael Sean Pepper · 2018 · Stem Cells International
  35. Single-cell fate decisions of bipotential hematopoietic progenitors
    Marjorie Brand, Edward R. Morrissey · 2020 · Current Opinion in Hematology
  36. Stochastic fate decisions of HSCs after transplantation: early contribution, symmetric expansion, and pool formation
    Stefan Radtke, Mark Enstrom, Dnyanada Pande, Elizabeth R. Duke, Erwing Fabian Cardozo Ojeda, Ravishankar Madhu, Staci Owen, Greta Kanestrom, Margaret Cui, Anai M. Perez et al. · 2023 · Blood
  37. CD38 promotes hematopoietic stem cell dormancy
    Liliia Ibneeva, Sumeet Pal Singh, Anupam N. Sinha, Sema Elif Eski, Rebekka Wehner, Luise Rupp, Iryna Kovtun, Juan Alberto Pérez-Valencia, Alexander Gerbaulet, Susanne Reinhardt et al. · 2024 · PLoS Biology
  38. Hematopoietic Stem Cell Heterogeneity
    Roland Jurecic · 2019 · Advances in experimental medicine and biology
  39. Hematopoietic stem cell heterogeneity is linked to the initiation and therapeutic response of myeloproliferative neoplasms
    Jingyuan Tong, Ting Sun, Shihui Ma, Yanhong Zhao, Mankai Ju, Yuchen Gao, Ping Zhu, Puwen Tan, Rongfeng Fu, Anqi Zhang et al. · 2021 · Cell stem cell
  40. Processing, visualising and reconstructing network models from single‐cell data
    Steven Woodhouse, Victoria Moignard, Berthold Göttgens, Jasmin Fisher · 2015 · Immunology and Cell Biology
  41. Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response
    Yukie Kashima, Ayako Suzuki, Ying Liu, Masahito Hosokawa, Hiroko Matsunaga, Masataka Shirai, Koji Arikawa, Sumio Sugano, Takashi Kohno, Haruko Takeyama et al. · 2018 · Scientific Reports
  42. Integrating single-cell RNA-sequencing and functional assays to decipher mammary cell states and lineage hierarchies
    Joseph L. Regan, Matthew John Smalley · 2020 · npj Breast Cancer
  43. Necroinflammation emerges as a key regulator of hematopoiesis in health and disease
    Philipp Jakob Jost, Ulrike Höckendorf · 2018 · Cell Death and Differentiation
  44. Bioinformatics for RNA‐Seq Data Analysis
    Shanrong Zhao, Baohong Zhang, Ying Zhang, William Gordon, Sarah Du, Theresa Paradis, Michael S. Vincent, David von Schack · 2016 · InTech eBooks
  45. Dissecting stem cell differentiation using single cell expression profiling
    Victoria Moignard, Berthold Göttgens · 2016 · Current Opinion in Cell Biology
  46. Output without input: the lifelong productivity of hematopoietic stem cells
    Thomas Höfer, Hans-Reimer Rodewald · 2016 · Current Opinion in Cell Biology
  47. Characterization of Immunogenicity of Malignant Cells with Stemness in Intrahepatic Cholangiocarcinoma by Single-Cell RNA Sequencing
    Jing Bian, Jianyang Fu, Xin Wang, Jihye Lee, Gagandeep Singh Brar, Freddy E. Escorcia, Maggie Cam, Changqing Xie · 2022 · Stem Cells International
  48. Physioxia-induced downregulation of Tet2 in hematopoietic stem cells contributes to enhanced self-renewal
    Arafat Aljoufi, Chi Zhang, James P. Ropa, Wennan Chang, Lakshmi Reddy Palam, Scott H. Cooper, Baskar Ramdas, Maegan L. Capitano, Hal E. Broxmeyer, Reuben Kapur · 2022 · Blood
  49. Multiplex live single-cell transcriptional analysis demarcates cellular functional heterogeneity
    Ayhan Atmanli, Dongjian Hu, Frederik Ernst Deiman, Annebel Marjolein van de Vrugt, François Cherbonneau, Lauren Deems Black, Ibrahim John Domian · 2019 · eLife
  50. PBX1: a TALE of two seasons—key roles during development and in cancer
    Laura Crisafulli, Matteo Brindisi, Mirko Giuseppe Liturri, Cristina Sobacchi, Francesca Ficara · 2024 · Frontiers in Cell and Developmental Biology
  51. Distinguishing three subtypes of hematopoietic cells based on gene expression profiles using a support vector machine
    Yuhang Zhang, Yu Hu, Yuchao Zhang, Landian Hu, Xiangyin Kong · 2017 · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease
  52. Clonal tracking of erythropoiesis in rhesus macaques
    Xing Fan, Chuanfeng Wu, Lauren L. Truitt, D. Espinoza, S. Sellers, Aylin C. Bonifacino, Yifan Zhou, Stefan Cordes, Allen E. Krouse, M. Metzger et al. · 2019 · Haematologica
  53. p57Kip2 regulates embryonic blood stem cells by controlling sympathoadrenal progenitor expansion
    Chrysa Kapeni, Leslie Nitsche, Alastair Morris Kilpatrick, Nicola K. Wilson, Kankan Xia, Bahar Mirshekar-Syahkal, Vashe Chandrakanthan, Camille Malouf, John E. Pimanda, Berthold Göttgens et al. · 2022 · Blood
  54. CellSTAR: a comprehensive resource for single-cell transcriptomic annotation
    Ying Zhang, Huaicheng Sun, Wei Zhang, Tingting Fu, Shijie Huang, Minjie Mou, Jinsong Zhang, Jianqing Gao, Yichao Ge, Qingxia Yang et al. · 2023 · Nucleic Acids Research
  55. Neat1 in hematopoietic stem cells
    Noam Fallik, Yael Bar‐Lavan, Yariv Greenshpan, Oron Goldstein, Markus Grosch, Micha Drukker, Roi Gazit · 2017 · Oncotarget
  56. Chasing Mavericks: The quest for defining developmental waves of hematopoiesis
    Taylor Cool, E. Camilla Forsberg · 2019 · Current topics in developmental biology/Current Topics in Developmental Biology
  57. Memory of Divisional History Directs the Continuous Process of Primitive Hematopoietic Lineage Commitment
    Jeffrey M. Bernitz, Katrina Rapp, Michael G. Daniel, Dmitrii Shcherbinin, Ye Yuan, Andreia Gomes, Avinash Waghray, Ran Brosh, Alexander Lachmann, Avi Ma’ayan et al. · 2020 · Stem Cell Reports
  58. Proliferation and Self-Renewal Are Differentially Sensitive to NRASG12V Oncogene Levels in an Acute Myeloid Leukemia Cell Line
    Morito Kurata, Marie Lue Antony, Klara E. Noble-Orcutt, Susan K. Rathe, Yoonkyu Lee, Hidehiro Furuno, Sachiko Ishibashi, Masumi Ikeda, Kouhei Yamamoto, Masanobu Kitagawa et al. · 2022 · Molecular Cancer Research
  59. Resolving the hematopoietic stem cell state by linking functional and molecular assays
    Maria Jassinskaja, Monika Gońka, David G. Kent · 2023 · Blood
  60. Preleukemic single-cell landscapes reveal mutation-specific mechanisms and gene programs predictive of AML patient outcomes
    Tomoya Isobe, Iwo Kuciński, Melania Barile, Xiaonan Wang, Rebecca Hannah, Hugo P. Bastos, Shirom Chabra, M. S. Vijayabaskar, Katherine Sturgess, Matthew Williams et al. · 2023 · Cell Genomics
  61. Ferulic Acid Alleviates Radiation-Induced Immune Damage by Acting on JAK/STAT Signaling Pathway
    Mingyue Huang, Anping Ye, Haoyu Zhang, Junru Chen, Tingyu Yang, Xue Wei, Yue Gao, Zeng-Chun Ma · 2024 · Pharmaceuticals
  62. CD49b identifies functionally and epigenetically distinct subsets of lineage-biased hematopoietic stem cells
    Ece Somuncular, Julia Hauenstein, Prajakta Khalkar, Anne‐Sofie Johansson, Özge Dumral, Nicolai Sebastian Frengen, Charlotte Gustafsson, Giuseppe Mocci, Tsu-Yi Su, Hugo Brouwer et al. · 2022 · Stem Cell Reports
  63. Clonal analysis of stem cells in differentiation and disease
    Bartomeu Colom, Philip H. Jones · 2016 · Current Opinion in Cell Biology
  64. JAK2V617F Mutant Megakaryocytes Contribute to Hematopoietic Aging in a Murine Model of Myeloproliferative Neoplasm
    Sandy Lee, Helen Wong, Melissa A. Castiglione, Malea M. Murphy, Kenneth Kaushansky, Huichun Zhan · 2022 · Stem Cells
  65. Expanding hematopoietic stem cell ex vivo: recent advances and technical considerations
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  66. HSPCs display within-family homogeneity in differentiation and proliferation despite population heterogeneity
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  67. Advancing Stem Cell Research through Multimodal Single-Cell Analysis
    Iwo Kuciński, Berthold Göttgens · 2020 · Cold Spring Harbor Perspectives in Biology
  68. Maintenance of hematopoietic stem cells by tyrosine-unphosphorylated STAT5 and JAK inhibition
    Matthew Williams, Xiaonan Wang, Hugo P. Bastos, Gabriela Grondys-Kotarba, Carys Johnson, Nicole Mende, Emily F Calderbank, Michelle Wantoch, Hyun Jung Park, Qin Wu et al. · 2024 · Blood Advances
  69. Heterogeneity of high-potency multilineage hematopoietic stem cells and identification of “Super” transplantability
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  70. Single‐Cell Sequencing in Normal and Malignant Hematopoiesis
    Nicola K. Wilson, Berthold Göttgens · 2018 · HemaSphere
  71. Micro‐RNAs : A safety net to protect hematopoietic stem cell self‐renewal
    Laura Crisafulli, Francesca Ficara · 2021 · Wiley Interdisciplinary Reviews - RNA
  72. Multidimensional Single-Cell Analyses in Organ Development and Maintenance
    Yifan Zhang, Feng Liu · 2019 · Trends in Cell Biology
  73. Concerted roles of PTEN and ATM in controlling hematopoietic stem cell fitness and dormancy
    Jérôme Fortin, Christian Bassi, Parameswaran Ramachandran, Wanda Y. Li, Ruxiao Tian, Ida Zarrabi, Graham Hill, Bryan E. Snow, Jillian Haight, Chantal Tobin et al. · 2021 · Journal of Clinical Investigation
  74. Cellular heterogeneity and immune microenvironment revealed by single-cell transcriptome in venous malformation and cavernous venous malformation
    Yongyun Li, Jie Yang, Yazhuo Huang, Shengfang Ge, Xin Song, Renbing Jia, Yefei Wang · 2021 · Journal of Molecular and Cellular Cardiology
  75. scIGANs: single-cell RNA-seq imputation using generative adversarial networks
    Yungang Xu, Zhigang Zhang, Lei You, Jiajia Liu, Zhiwei Fan, Xiaobo Zhou · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  76. Targeting RhoA nuclear mechanoactivity rejuvenates aged hematopoietic stem cells
    Eva Mejía-Ramírez, Pablo Iáñez Picazo, Barbara Walter, Sara Montserrat‐Vazquez, Francesco Affuso, Stefan Wieser, Fabio Pezzano, Loïc Reymond, Jorge Castillo‐Robles, Francesca Matteini et al. · 2025 · Nature Aging
  77. Machine Learning Helps Identify New Drug Mechanisms in Triple-Negative Breast Cancer
    Arjun P. Athreya, Alan J. Gaglio, Junmei Cairns, Krishna R. Kalari, Richard M. Weinshilboum, Liewei Wang, Zbigniew Kalbarczyk, Ravishankar K. Iyer · 2018 · IEEE Transactions on NanoBioscience
  78. Single-cell approaches to dissect adaptive immune responses involved in autoimmunity: the case of celiac disease
    Ida Lindeman, Ludvig Magne Sollid · 2021 · Mucosal Immunology
  79. Clonal Analysis of Embryonic Hematopoietic Stem Cell Precursors Using Single Cell Index Sorting Combined with Endothelial Cell Niche Co-culture
    Brandon Hadland, Barbara Varnum‐Finney, Cynthia Nourigat-Mckay, David A. Flowers, Irwin D. Bernstein · 2018 · Journal of Visualized Experiments
  80. Elucidating transcriptomic profiles from single-cell RNA sequencing data using nature-inspired compressed sensing
    Zhuohan Yu, Chuang Bian, Genggeng Liu, Shixiong Zhang, Ka‐Chun Wong, Xiangtao Li · 2021 · Briefings in Bioinformatics
  81. Endomucin marks quiescent long-term multi-lineage repopulating hematopoietic stem cells and is essential for their transendothelial migration
    Sophia Engelhard, Montserrat Estruch, Shuyu Qin, Christoph Andreas Engelhard, Francisco Germán Rodríguez-González, Martine Drilsvik, Javier Martin Gonzalez, Jeng‐Wei Lu, David Bryder, Claus Nerlov et al. · 2024 · Cell Reports
  82. Mitochondrial permeability transition dictates mitochondrial maturation upon switch in cellular identity of hematopoietic precursors
    Sandeep P. Dumbali, Paulina D. Horton, Travis I. Moore, Pamela L. Wenzel · 2024 · Communications Biology
  83. Regulation of Hematopoietic Stem Cell Dormancy and Quiescence: Insights into Regeneration and Disease
    Jasmin Rettkowski, Nina Cabezas‐Wallscheid · 2025 · Annual Review of Cell and Developmental Biology
  84. Role of thrombomodulin expression on hematopoietic stem cells
    Sreemanti Basu, Hai Liang, Irene Hernández, Mark Zogg, British Fields, Jennifer May, Yamini Ogoti, Tine L Wyseure, Laurent O. Mosnier, Robert T. Burns et al. · 2019 · Journal of Thrombosis and Haemostasis
  85. Emerging single-cell tools are primed to reveal functional and molecular heterogeneity in malignant hematopoietic stem cells
    Mairi S. Shepherd, David G. Kent · 2019 · Current Opinion in Hematology
  86. Hematopoiesis in aging: Current concepts and challenges
    Christopher Y. Park · 2016 · Seminars in Hematology
  87. Assessing the reliability of spike-in normalization for analyses of single-cell RNA sequencing data
    Aaron T. L. Lun, Fernando J. Calero‐Nieto, Liora Haim-Vilmovsky, Berthold Göttgens, John C. Marioni · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  88. Training a neural network to learn other dimensionality reduction removes data size restrictions in bioinformatics and provides a new route to exploring data representations
    Alex Dexter, Spencer A. Thomas, Rory T. Steven, Kenneth N. Robinson, Adam J. Taylor, Efstathios Andreas Elia, Chelsea J. Nikula, Andrew D. Campbell, Yulia Panina, Arafath Kaja Najumudeen et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  89. Quantitative association between gene expression and blood cell production of individual hematopoietic stem cells in mice
    Jiang Du, Adnan Y. Chowdhury, Anna Nogalska, Jorge L. Contreras, Yeachan Lee, Mary Vergel-Rodriguez, Melissa Valenzuela, Rong Lu · 2024 · Science Advances
  90. Niche-derived Semaphorin 4A safeguards functional identity of myeloid-biased hematopoietic stem cells
    Dorsa Toghani, Sanika Gupte, Sharon Zeng, Elmir Mahammadov, Edie I. Crosse, Negar Seyedhassantehrani, Christian S. Burns, David M. Gravano, Stefan Radtke, Hans‐Peter Kiem et al. · 2025 · Nature Aging
  91. Transcriptional activation of regenerative hematopoiesis via microenvironmental sensing
    Tomer Itkin, Sean Houghton, Ryan P. Schreiner, Yang Lin, Chaitanya R. Badwe, Véronique Voisin, Alex Murison, Negar Seyedhassantehrani, Kerstin B. Kaufmann, Laura García‐Prat et al. · 2025 · Nature Immunology
  92. Single‐cell analyses to reveal hematopoietic stem cell fate decisions
    Ilaria Lunger, Malak Fawaz, Michael A. Rieger · 2017 · FEBS Letters
  93. Fluorescent genetic barcoding for cellular multiplex analyses
    Tobias Maetzig, Michael Alexander Morgan, Axel Schambach · 2018 · Experimental Hematology
  94. Expanded potential stem cell media as a tool to study human developmental hematopoiesis in vitro
    Adam C. Wilkinson, David John Ryan, Iwo Kuciński, Wei Wang, Jian Ping Yang, Sonia Nestorowa, Evangelia Diamanti, Jason Cheuk-Ho Tsang, Juexuan Wang, Lia S. Campos et al. · 2019 · Experimental Hematology
  95. Hematopoietic Stem Cells in Health and Disease—Insights from Single-Cell Multi-omic Approaches
    Simon F. Haas · 2020 · Current Stem Cell Reports
  96. Neuron Interference: Evidence-Based Batch Effect Removal
    Matthew Amodio, Ruth R. Montgomery, Jenna L. Pappalardo, David A. Hafler, Smita Krishnaswamy · 2018 · arXiv (Cornell University)
  97. Metabolically Primed Multipotent Hematopoietic Progenitors Fuel Innate Immunity
    Jason Cosgrove, Anne-Marie Lyne, Ildefonso Rodríguez‐Ramiro, Vincent Cabeli, Cécile Conrad, Sabrina Tenreira Bento, Emilie Tubeuf, Erica Russo, Fanny Tabarin, Yannis Belloucif et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  98. CD61 identifies a superior population of aged murine HSCs and is required to preserve quiescence and self-renewal
    Natalia Skinder, Irene Sanz Fernández, Albertien Dethmers-Ausema, Ellen Weersing, Gerald de Haan · 2023 · Blood Advances
  99. Cross-Tissue Identification of Somatic Stem and Progenitor Cells Using a Single-Cell RNA-Sequencing Derived Gene Signature
    Petra Catalina Schwalie, Paloma Ordóñez‐Morán, Joerg Huelsken, Bart Deplancke · 2017 · Stem Cells
  100. Using Nanofiber Scaffolds for the Differentiation of Induced Pluripotent Stem Cells into Cardiomyocytes: The Latest Approaches in Tissue Engineering
    Rumysa Saleem Khan, Taha Umair Wani, Anjum Hamid Rather, Mushtaq Ahmad Beigh, Faheem Arjamend Sheikh · 2021 · Springer eBooks