The DOI matches its Crossref record; 81 of the 81 references it cites were found in a registry or an index.
Next-generation sequencing technologies and their implications for crop genetics and breeding
Open accessAbstract
Using next-generation sequencing technologies it is possible to resequence entire plant genomes or sample entire transcriptomes more efficiently and economically and in greater depth than ever before. Rather than sequencing individual genomes, we envision the sequencing of hundreds or even thousands of related genomes to sample genetic diversity within and between germplasm pools. Identification and tracking of genetic variation are now so efficient and precise that thousands of variants can be tracked within large populations. In this review, we outline some important areas such as the large-scale development of molecular markers for linkage mapping, association mapping, wide crosses and alien introgression, epigenetic modifications, transcript profiling, population genetics and de novo genome/organellar genome assembly for which these technologies are expected to advance crop genetics and breeding, leading to crop improvement.
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Cites
DNA sequencing with chain-terminating inhibitors
Sanger, F., Nicklen, S., & Coulson, A. R. (1977) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.74.12.5463 · Cited by 68,572
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Zerbino, D. R., & Birney, E. (2008) · Genome Research · doi:10.1101/gr.074492.107 · Cited by 9,491
High-Resolution Profiling of Histone Methylations in the Human Genome
Barski, A., Cuddapah, S., Cui, K., Roh, T.-Y., Schones, D. E., Wang, Z., Wei, G., Chepelev, I., & Zhao, K. (2007) · Cell · doi:10.1016/j.cell.2007.05.009 · Cited by 6,845
Environmental genome shotgun sequencing of the sargasso sea
Venter, J. C., Remington, K., Heidelberg, J. F., Halpern, A. L., Rusch, D., Eisen, J. A., Wu, D., Paulsen, I., Nelson, K. E., Nelson, W., et al. (2004) · Science · doi:10.1126/science.1093857 · Cited by 4,376
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)
Tuskan, G. A., DiFazio, S., Jansson, S., Bohlmann, J., Grigoriev, I., Hellsten, U., Putnam, N., Ralph, S., Rombauts, S., Salamov, A., et al. (2006) · Science · doi:10.1126/science.1128691 · Cited by 4,326
A Draft Sequence of the Rice Genome ( Oryza sativa L. ssp. indica )
Yu, J., Hu, S., Wang, J., Wong, G. K.-S., Li, S., Liu, B., Deng, Y., Dai, L., Zhou, Y., Zhang, X., et al. (2002) · Science · doi:10.1126/science.1068037 · Cited by 4,208
The map-based sequence of the rice genome
International Rice Genome Sequencing Project, & Sasaki, T. (2005) · Nature · doi:10.1038/nature03895 · Cited by 3,797
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
The French–Italian Public Consortium for Grapevine Genome Characterization (2007) · Nature · doi:10.1038/nature06148 · Cited by 3,767
Real-Time DNA Sequencing from Single Polymerase Molecules
Eid, J., Fehr, A., Gray, J., Luong, K., Lyle, J., Otto, G., Peluso, P., Rank, D., Baybayan, P., Bettman, B., et al. (2009) · Science · doi:10.1126/science.1162986 · Cited by 3,732
Serial Analysis of Gene Expression
Velculescu, V. E., Zhang, L., Vogelstein, B., & Kinzler, K. W. (1995) · Science · doi:10.1126/science.270.5235.484 · Cited by 3,711
Research works printed but not linked: 4
- Barry, 2001, The use of the Monsanto draft rice genome sequence in research, Plant Physiol., 125, 1164, 10.1104/pp.125.3.1164 · doi:10.1104/pp.125.3.1164
- Bedell, 2005, Sorghum genome sequencing by methylation filtration, PLoS Biol., 3, 103, 10.1371/journal.pbio.0030013 · doi:10.1371/journal.pbio.0030013
- Gupta, 2008, Ultrafast and low-cost DNA sequencing methods for applied genomics research, Proc. Natl. Acad. Sci. India, 78, 91
- Wicker, 2008, Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats, BMC Genomics, 9, 518, 10.1186/1471-2164-9-518 · doi:10.1186/1471-2164-9-518
Cited by
Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., Chen, X., & Li, Y. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-726 · Cited by 433
Quinoa biodiversity and sustainability for food security under climate change. A review
Ruiz, K. B., Biondi, S., Oses, R., Acuña-Rodríguez, I. S., Antognoni, F., Martinez-Mosqueira, E. A., Coulibaly, A., Canahua-Murillo, A., Pinto, M., Zurita-Silva, A., et al. (2014) · Agronomy for Sustainable Development · doi:10.1007/s13593-013-0195-0 · Cited by 370
Varshney, R. K., Thudi, M., Roorkiwal, M., He, W., Upadhyaya, H. D., Yang, W., Bajaj, P., Cubry, P., Rathore, A., Jian, J., et al. (2019) · Nature Genetics · doi:10.1038/s41588-019-0401-3 · Cited by 312
Self-citationDe novo assembly of short sequence reads
Paszkiewicz, K., & Studholme, D. J. (2010) · Briefings in Bioinformatics · doi:10.1093/bib/bbq020 · Cited by 204
Structural variants exhibit widespread allelic heterogeneity and shape variation in complex traits
Chakraborty, M., Emerson, J. J., Macdonald, S. J., & Long, A. D. (2019) · Nature Communications · doi:10.1038/s41467-019-12884-1 · Cited by 186
Metadata
- Authors
- Varshney, R. K., Nayak, S. N., May, G. D., & Jackson, S. A.
- Venue
- Trends in Biotechnology
- Publisher
- Elsevier BV
- Published
- 2009-09
- Volume
- 27
- Issue
- 9
- Pages
- 522-530
- ISSN
- 0167-7799 (ISSN-L)
- OpenAlex
- W2171661952
- Cited by
- 936
- References
- 81
- FWCI
- 4.20
- Type
- journal article
- Language
- en
- Open access
- hybrid
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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