More genomic resources for less-studied crops.

Varshney, Rajeev K.; Glaszmann, Jean-Christophe; Leung, Hei; Ribaut, Jean-Marcel

doi:10.1016/j.tibtech.2010.06.007

Cited by 141Genetic Mapping and Diversity in Plants and AnimalsGenetic and Environmental Crop StudiesAgricultural Productivity and Crop Improvement

More genomic resources for less-studied crops.

Varshney, Rajeev K., Glaszmann, Jean-Christophe, Leung, Hei, Ribaut, Jean-Marcel·2010·Trends in Biotechnology

DOI 10.1016/j.tibtech.2010.06.007

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Abstract

Many of the crop species considered to be minor on a global scale, yet are important locally for food security in the developing world, have remained less-studied crops. Recent years have witnessed the development of large-scale genomic and genetic resources, including simple sequence repeat, single nucleotide polymorphism and diversity array technology markers, expressed sequence tags or transcript reads, bacterial artificial chromosome libraries, genetic and physical maps, and genetic stocks with rich genetic diversity, such as core reference sets and introgression lines in these crops. These resources have the potential to accelerate gene discovery and initiate molecular breeding in these crops, thereby enhancing crop productivity to ensure food security in developing countries.

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Genomic resources for sweet potato were deficient until 2010 due to its complex hexaploid genome.
“Comparing with other main crops or model organisms, the genomic resources for this crop are deficient until 2010 due to its complex hexaploid genome [8].”
From Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.] (2012) · cites this paper as [8]
The resource table (Glossary, p. 2) identifies sweet potato as hexaploid and rates several of its genomic resources as moderate or unavailable; the Transcriptomic resources section (p. 4) contrasts its historically limited resources with those of better-studied cereals. The paper does not say that hexaploidy caused the resource shortfall, and it describes resources becoming available by 2010 rather than remaining deficient until then. (LLM, conf=0.86)
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DOI 10.1007/s11032-010-9512-3 The GCP molecular marker toolkit, an instrument for use in breeding food security crops
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Authors: Varshney, R. K., Glaszmann, J.-C., Leung, H., & Ribaut, J.-M.
Affiliations: The University of Western Australia (AU)
Centre de Coopération Internationale en Recherche Agronomique pour le Développement (FR)
International Rice Research Institute (PH)
Centro Internacional de Mejoramiento de Maíz Y Trigo (MX)
Corresponding author: Varshney, Rajeev K.
ORCID: Varshney, Rajeev K.
Ribaut, Jean-Marcel
Venue: Trends in Biotechnology
Publisher: Elsevier BV
Published: 2010-09
Volume: 28
Issue: 9
Pages: 452-460
ISSN: 0167-7799 (ISSN-L)
DOI: 10.1016/j.tibtech.2010.06.007
OpenAlex: W1973162146
Cited by: 140
References: 81
Citations by year: 2026: 1 · 2025: 1 · 2024: 4 · 2023: 4 · 2022: 7 · 2021: 8 · 2020: 6 · 2019: 9 · 2018: 9 · 2017: 9 · 2016: 6 · 2015: 5 · 2014: 19 · 2013: 22 · 2012: 13
FWCI: 1.75
Type: journal article
Language: en
Open access: closed
Licence: www.elsevier.com/tdm/userlicense/1.0/ (tdm)
Locations: Trends in biotechnology (publishedVersion)
PubMed (publishedVersion)
Open Access Repository of ICRISAT (International Crops Research Institute for the Semi-Arid Tropics) (acceptedVersion)
Murdoch University Research Portal (submittedVersion)
UWA Profiles and Research Repository (University of Western Australia) (submittedVersion)
Agritrop (Cirad) (submittedVersion)
CGSPace A Repository of Agricultural Research Outputs (Consultative Group for International Agricultural Research) (submittedVersion)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Mapping and Diversity in Plants and Animals
Life Sciences › Agricultural and Biological Sciences › Plant Science › Genetic and Environmental Crop Studies
Life Sciences › Agricultural and Biological Sciences › Agronomy and Crop Science › Agricultural Productivity and Crop Improvement
Keywords: minor crops, crop genomics, genetic resources, microsatellite markers, SNP markers, expressed sequence tags, bacterial artificial chromosome library, genetic linkage map, physical map, introgression lines, gene discovery, molecular breeding, food security
MeSH terms: Breeding, Genomics, Databases, Genetic, Plants, Genetically Modified

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