Sociomics: Using Omic Approaches to Understand Social Evolution
Abstract
All of life is social, from genes cooperating to form organisms, to animals cooperating to form societies. Omic approaches offer exceptional opportunities to solve major outstanding problems in the study of how sociality evolves. First, omics can be used to clarify the extent and form of sociality in natural populations. This is especially useful in species where it is difficult to study social traits in natural populations, such as bacteria and other microbes. Second, omics can be used to examine the consequences of sociality for genome evolution and gene expression. This is especially useful in cases where there is clear variation in the level of sociality, such as the social insects. Major tasks for the future are to apply these approaches to a wider range of non-model organisms, and to move from exploratory analyses to the testing of evolutionary theory.
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Similar problems, and a need for phylogenetic methods, arise when using data from other omic methods, such as transcriptomics, metagenomics or metabolomics.
“Similar problems, and a need for phylogenetic methods, arise when using data from other omic methods, such as transcriptomics, metagenomics or metabolomics61–64.”
From A phylogenetic approach to comparative genomics (2025) · cites this paper as [64]
The paper identifies interpretive challenges for omic data in “Challenges to the interpretation of omic data” (p. 13), and “Concluding Remarks” (p. 10) asks whether omic signatures show patterns across phylogenies. “Statistical power in comparative studies” (p. 13) discusses phylogenetically independent transitions, but only for comparative genomic analyses; it does not establish a general need for phylogenetic methods when analysing transcriptomic, metagenomic, or metabolomic data. (LLM, conf=0.82)
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Cites
Cooperation and competition in pathogenic bacteria
Griffin, A. S., West, S. A., & Buckling, A. (2004) · Nature · doi:10.1038/nature02744 · Cited by 1,104 · see citing works
Self-citationLong-term social dynamics drive loss of function in pathogenic bacteria
Andersen, S. B., Marvig, R. L., Molin, S., Krogh Johansen, H., & Griffin, A. S. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1508324112 · Cited by 168 · see citing works
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Research works printed but not linked: 28
- [1]1. Hamilton, W.D. (1964) Genetical Evolution of Social Behaviour I & II. Journal of Theoretical Biology 7 (1), 1-52.
- [2]2. Sachs, J.L. et al. (2004) The evolution of cooperation. Quarterly Review of Biology 79 (2), 135-160.
- [3]3. West, S.A. et al. (2007) Evolutionary explanations for cooperation. Current Biology 17 (16), R661-R672.
- [4]4. Bourke, A.F.G. (2011) Principles of social evolution, Oxford University Press.
- [5]5. Trivers, R.L. (1971) The evolution of reciprocal altruism. The Quarterly Review of Biology 46 (1), 35-37.
- [6]6. Davies, N.B. et al. (2012) An introduction to behavioural ecology, 4th edn., Wiley-Blackwell.
- [7]7. Westermann, A.J. et al. (2017) Resolving host-pathogen interactions by dual RNA-seq. PLoS Pathog 13 (2), e1006033.
- [9]9. Bourke, A.F. (2014) Hamilton's rule and the causes of social evolution. Philos Trans R Soc Lond B Biol Sci 369 (1642), 20130362. 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598
- [11]11. Kapheim, K.M. et al. (2015) Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science 348 (6239), 1139-43.
- [12]12. Berens, A.J. et al. (2015) Comparative transcriptomics of convergent evolution: different genes but conserved pathways underlie caste phenotypes across lineages of eusocial insects. Mol Biol Evol 32 (3), 690-703.
- [13]13. Grozinger, C.M. et al. (2007) Genome-wide analysis reveals differences in brain gene expression patterns associated with caste and reproductive status in honey bees (Apis mellifera). Mol Ecol 16 (22), 4837-48.
- [14]14. West, S.A. and Cooper, G.A. (2016) Division of labour in microorganisms: an evolutionary perspective. Nat Rev Microbiol 14 (11), 716-723.
- [15]15. Spribille, T. et al. (2016) Basidiomycete yeasts in the cortex of ascomycete macrolichens. Science 353 (6298), 488-92.
- [16]16. Kleiner, M. et al. (2012) Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use. Proc Natl Acad Sci U S A 109 (19), E1173-82.
- [17]17. McCutcheon, J.P. and Moran, N.A. (2007) Parallel genomic evolution and metabolic interdependence in an ancient symbiosis. Proc Natl Acad Sci U S A 104 (49), 19392-7.
- [18]18. Douglas, A.E. (2009) The microbial dimension in insect nutritional ecology. Functional Ecology 23 (1), 38-47.
- [19]19. Wu, D. et al. (2006) Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters. PLoS Biol 4 (6), e188.
- [20]20. Campbell, M.A. et al. (2015) Genome expansion via lineage splitting and genome reduction in the cicada endosymbiont Hodgkinia. Proc Natl Acad Sci U S A 112 (33), 10192-9.
- [21]21. Van Leuven, J.T. et al. (2014) Sympatric speciation in a bacterial endosymbiont results in two genomes with the functionality of one. Cell 158 (6), 1270-80.
- [22]22. Manor, O. et al. (2014) Mapping the inner workings of the microbiome: genomic- and metagenomic-based study of metabolism and metabolic interactions in the human microbiome. Cell Metab 20 (5), 742-52.
- [23]23. Login, F.H. et al. (2011) Antimicrobial peptides keep insect endosymbionts under control. Science 334 (6054), 362-5.
- [24]24. Van de Velde, W. et al. (2010) Plant peptides govern terminal differentiation of bacteria in symbiosis. Science 327 (5969), 1122-6.
- [25]25. Morales, J. et al. (2016) Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei. BMC Evol Biol 16 (1), 247.
- [26]26. Combe, M. et al. (2015) Single-Cell Analysis of RNA Virus Infection Identifies Multiple Genetically Diverse Viral Genomes within Single Infectious Units. Cell Host Microbe 18 (4), 424-32.
- [28]28. Ostrowski, E.A. et al. (2015) Genomic signatures of cooperation and conflict in the social amoeba. Curr Biol 25 (12), 1661-5.
- [29]29. Robinson, G.E. et al. (2005) Sociogenomics: social life in molecular terms. Nat Rev Genet 6 (4), 257-70.
- [30]30. Foster, K.R. et al. (2007) What can microbial genetics teach sociobiology? Trends Genet 23 (2), 74-80.
- [31]31. Ghoul, M. et al. (2014) Toward an Evolutionary Definition of Cheating. Evolution 68 (2), 318-331.
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A phylogenetic approach to comparative genomics
Dewar, A. E., Belcher, L. J., & West, S. A. (2025) · Nature Reviews Genetics · doi:10.1038/s41576-024-00803-0 · Cited by 41 · see citing works
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- Authors
- Ghoul, M., Andersen, S. B., & West, S. A.
- Affiliations
- University of Oxford (GB)
- NYU Langone Health (US)
- Corresponding author
- Ghoul, Melanie
- Andersen, Sandra B.
- Venue
- Trends in Genetics
- Publisher
- Elsevier BV
- Published
- 2017-06
- Volume
- 33
- Issue
- 6
- Pages
- 408-419
- ISSN
- 0168-9525 (ISSN-L)
- OpenAlex
- W2613233718
- Cited by
- 24
- References
- 2
- Citations by year
- 2025: 2 · 2024: 4 · 2023: 4 · 2022: 1 · 2021: 6 · 2020: 2 · 2019: 1 · 2018: 4
- FWCI
- 0.25
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Trends in Genetics (publishedVersion)
- PubMed (publishedVersion)
- Oxford University Research Archive (ORA) (University of Oxford) (acceptedVersion)
- Research at the University of Copenhagen (University of Copenhagen) (submittedVersion)
- Funders
- Novo Nordisk Fonden (NNF16OC0018638)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Insect and Arachnid Ecology and Behavior
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Animal Behavior and Reproduction
- Social Sciences › Sociology and Political Science › Evolutionary Game Theory and Cooperation
- Keywords
- social evolution, sociality, genome evolution, gene expression, social insects, microbial cooperation, non-model organisms
- MeSH terms
- Animals, Biological Evolution, Gene Expression Regulation, Social Behavior, Genome, Genomics, Proteomics
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